Wall clock time and date at job start Tue Mar 31 2020 06:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46641 * 2 1 4 4 O 1.42895 * 109.47252 * 120.00305 * 2 1 3 5 5 C 1.35898 * 117.00068 * 276.26754 * 4 2 1 6 6 C 1.38741 * 120.05388 * 356.88430 * 5 4 2 7 7 C 1.38143 * 119.94325 * 179.97438 * 6 5 4 8 8 C 1.38262 * 120.05498 * 0.02562 * 7 6 5 9 9 C 1.38267 * 120.11457 * 0.27405 * 8 7 6 10 10 C 1.38140 * 120.05029 * 359.44871 * 9 8 7 11 11 C 1.50699 * 109.46895 * 240.00392 * 2 1 3 12 12 O 1.20831 * 119.99953 * 244.99879 * 11 2 1 13 13 O 1.34234 * 120.00413 * 64.99653 * 11 2 1 14 14 C 1.45196 * 117.00062 * 180.02562 * 13 11 2 15 15 C 1.52997 * 109.46834 * 180.02562 * 14 13 11 16 16 C 1.50701 * 115.55103 * 59.06843 * 15 14 13 17 17 H 1.08006 * 119.99324 * 265.64277 * 16 15 14 18 18 C 1.37870 * 120.00472 * 85.64864 * 16 15 14 19 19 N 1.31524 * 119.99593 * 4.84061 * 18 16 15 20 20 Si 1.86795 * 120.00220 * 184.84581 * 18 16 15 21 21 H 1.48502 * 109.47333 * 89.99859 * 20 18 16 22 22 H 1.48505 * 109.47268 * 209.99507 * 20 18 16 23 23 H 1.48499 * 109.47294 * 329.99520 * 20 18 16 24 24 C 1.53002 * 117.49868 * 273.38977 * 15 14 13 25 25 C 1.53009 * 117.49600 * 204.73555 * 15 14 13 26 26 H 1.09005 * 109.47157 * 299.99364 * 1 2 3 27 27 H 1.08994 * 109.47794 * 59.99849 * 1 2 3 28 28 H 1.08999 * 109.47118 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.02521 * 0.02562 * 6 5 4 30 30 H 1.08002 * 119.97194 * 179.97438 * 7 6 5 31 31 H 1.08004 * 119.94187 * 179.97438 * 8 7 6 32 32 H 1.07998 * 119.96994 * 179.70434 * 9 8 7 33 33 H 1.08003 * 120.02613 * 180.28004 * 10 9 8 34 34 H 1.09000 * 109.46822 * 299.99777 * 14 13 11 35 35 H 1.09001 * 109.47306 * 59.99794 * 14 13 11 36 36 H 0.97000 * 119.99500 * 180.02562 * 19 18 16 37 37 H 1.09002 * 117.49558 * 0.02562 * 24 15 14 38 38 H 1.09005 * 117.49646 * 145.01849 * 24 15 14 39 39 H 1.09002 * 117.49589 * 214.97950 * 25 15 14 40 40 H 1.08998 * 117.49832 * 359.97245 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0874 0.0558 2.3105 6 6 1.7778 1.4081 2.2955 7 6 1.8605 2.1473 3.4596 8 6 2.2518 1.5406 4.6388 9 6 2.5669 0.1944 4.6551 10 6 2.4803 -0.5504 3.4949 11 6 2.0323 -0.7103 -1.2305 12 8 2.6506 -1.7428 -1.1220 13 8 1.7928 -0.1962 -2.4471 14 6 2.3059 -0.9343 -3.5874 15 6 1.9380 -0.1995 -4.8779 16 6 2.4573 1.2105 -4.9937 17 1 1.8351 2.0413 -4.6953 18 6 3.7267 1.4399 -5.4806 19 7 4.4485 0.4377 -5.9327 20 14 4.4212 3.1738 -5.4979 21 1 5.1327 3.4348 -4.2208 22 1 5.3704 3.3156 -6.6312 23 1 3.3129 4.1495 -5.6555 24 6 0.5731 -0.5029 -5.4991 25 6 1.8495 -1.0274 -6.1616 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.4717 1.8823 1.3747 30 1 1.6200 3.2001 3.4484 31 1 2.3162 2.1204 5.5478 32 1 2.8769 -0.2760 5.5764 33 1 2.7221 -1.6029 3.5090 34 1 3.3903 -1.0130 -3.5110 35 1 1.8691 -1.9329 -3.6002 36 1 5.3417 0.5990 -6.2749 37 1 -0.0629 -1.2258 -4.9881 38 1 0.0509 0.3173 -5.9918 39 1 2.1665 -0.5521 -7.0899 40 1 2.0538 -2.0954 -6.0867 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174740230.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:24 Heat of formation + Delta-G solvation = -84.339961 kcal Electronic energy + Delta-G solvation = -22645.987670 eV Core-core repulsion = 19198.767271 eV Total energy + Delta-G solvation = -3447.220399 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.94836 -40.89454 -38.82266 -38.25393 -37.02402 -34.02093 -33.44166 -31.77827 -30.62500 -28.85782 -27.39438 -25.90285 -23.90801 -23.30009 -22.92661 -21.53158 -21.22059 -19.60739 -18.56706 -18.46285 -17.60962 -17.51324 -16.81688 -16.65788 -16.31358 -16.24643 -15.68389 -15.24546 -14.84372 -14.46976 -14.36418 -14.21063 -13.96165 -13.61693 -13.52816 -13.30830 -12.98318 -12.86588 -12.80860 -12.48256 -12.39894 -12.20621 -12.08839 -11.80587 -11.75895 -11.56572 -11.30067 -10.92414 -10.45909 -10.08287 -9.95580 -9.22736 -8.13991 -6.25759 0.38473 0.45975 1.00779 1.12501 1.41133 1.42833 1.52204 2.39832 2.43425 2.83551 3.14454 3.30313 3.53662 3.64073 3.73358 3.91335 4.01063 4.10217 4.29555 4.32824 4.38123 4.42068 4.51374 4.59070 4.62628 4.64740 4.74884 4.80655 4.97869 5.06178 5.08971 5.18107 5.34112 5.36518 5.47931 5.53970 5.60026 5.64825 5.74473 5.81516 6.30438 6.34476 6.65941 6.80033 7.43044 8.94199 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018641 B = 0.003871 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.713987 B = 7231.109727 C = 8030.956829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.099 3.901 3 H 0.127 0.873 4 O -0.316 6.316 5 C 0.104 3.896 6 C -0.221 4.221 7 C -0.082 4.082 8 C -0.159 4.159 9 C -0.081 4.081 10 C -0.170 4.170 11 C 0.454 3.546 12 O -0.536 6.536 13 O -0.331 6.331 14 C 0.128 3.872 15 C 0.001 3.999 16 C -0.501 4.501 17 H 0.059 0.941 18 C 0.021 3.979 19 N -0.910 5.910 20 Si 0.951 3.049 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.262 1.262 24 C -0.177 4.177 25 C -0.141 4.141 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.128 0.872 34 H 0.037 0.963 35 H 0.054 0.946 36 H 0.260 0.740 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 3.092 18.645 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.145 0.855 4 O -0.230 6.230 5 C 0.059 3.941 6 C -0.239 4.239 7 C -0.099 4.099 8 C -0.176 4.176 9 C -0.098 4.098 10 C -0.188 4.188 11 C 0.297 3.703 12 O -0.426 6.426 13 O -0.246 6.246 14 C 0.054 3.946 15 C 0.000 4.000 16 C -0.539 4.539 17 H 0.077 0.923 18 C -0.179 4.179 19 N -0.548 5.548 20 Si 0.777 3.223 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.186 1.186 24 C -0.214 4.214 25 C -0.179 4.179 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.158 0.842 30 H 0.169 0.831 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.146 0.854 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.524 2.538 18.491 20.124 hybrid contribution 1.026 0.372 -0.633 1.262 sum -6.498 2.910 17.858 19.225 Atomic orbital electron populations 1.22270 0.89072 1.04593 1.06013 1.21767 0.97776 0.96494 0.79801 0.85531 1.86111 1.81656 1.39068 1.16178 1.19379 0.97703 0.91223 0.85755 1.21551 1.08181 0.92804 1.01388 1.21337 0.96249 1.00828 0.91535 1.21493 1.01713 0.95184 0.99256 1.21315 0.96808 0.94359 0.97350 1.20699 1.05858 1.01446 0.90816 1.23823 0.76640 0.83581 0.86217 1.90627 1.38938 1.25272 1.87803 1.86501 1.71133 1.52793 1.14216 1.22611 0.96840 0.92488 0.82668 1.18874 0.97189 0.95566 0.88325 1.20636 0.99614 0.90922 1.42687 0.92292 1.25738 0.97383 1.00458 0.94337 1.70118 1.10737 1.32482 1.41456 0.85662 0.78464 0.80771 0.77449 1.20588 1.21037 1.18630 1.23061 0.90626 1.02749 1.04936 1.22434 1.00915 0.97353 0.97188 0.88171 0.88221 0.91329 0.84170 0.83133 0.83021 0.82725 0.85424 0.94459 0.92750 0.93088 0.88914 0.89502 0.91061 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 9.25 71.98 0.67 -2.96 16 2 C 0.10 2.92 2.77 29.85 0.08 3.00 16 3 H 0.13 3.27 5.97 -2.39 -0.01 3.25 16 4 O -0.32 -10.05 9.34 -73.37 -0.69 -10.73 16 5 C 0.10 2.71 6.55 22.51 0.15 2.86 16 6 C -0.22 -4.69 8.37 22.37 0.19 -4.51 16 7 C -0.08 -1.35 10.04 22.25 0.22 -1.13 16 8 C -0.16 -2.37 10.04 22.28 0.22 -2.14 16 9 C -0.08 -1.35 10.04 22.25 0.22 -1.13 16 10 C -0.17 -3.89 9.99 22.36 0.22 -3.67 16 11 C 0.45 18.05 7.29 71.24 0.52 18.56 16 12 O -0.54 -24.95 16.26 28.37 0.46 -24.49 16 13 O -0.33 -14.25 10.04 -51.45 -0.52 -14.77 16 14 C 0.13 6.05 5.31 71.98 0.38 6.43 16 15 C 0.00 0.04 1.74 -52.92 -0.09 -0.05 16 16 C -0.50 -26.88 8.67 25.60 0.22 -26.66 16 17 H 0.06 3.13 7.82 -2.91 -0.02 3.11 16 18 C 0.02 1.14 5.43 84.65 0.46 1.60 16 19 N -0.91 -51.85 12.62 21.45 0.27 -51.58 16 20 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 C -0.18 -7.26 9.94 30.62 0.30 -6.95 16 25 C -0.14 -6.49 9.12 30.62 0.28 -6.21 16 26 H 0.10 1.74 7.38 -2.38 -0.02 1.72 16 27 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.14 2.63 5.70 -2.91 -0.02 2.62 16 30 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 32 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 34 H 0.04 2.00 8.13 -2.39 -0.02 1.98 16 35 H 0.05 2.40 8.10 -2.39 -0.02 2.38 16 36 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 37 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.09 3.46 8.14 -2.38 -0.02 3.44 16 39 H 0.07 3.54 8.14 -2.39 -0.02 3.52 16 40 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -67.52 346.17 6.64 -60.88 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 1.03 Total: 18.75 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 4.05 Total: -22.95 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.27 Total: -51.58 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -0.74 Total: -49.99 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -67.52 6.64 -60.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174740230.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.461 kcal (2) G-P(sol) polarization free energy of solvation -67.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds