Wall clock time and date at job start Tue Mar 31 2020 06:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35894 * 116.99614 * 2 1 4 4 C 1.38749 * 120.06106 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94777 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05502 * 359.73816 * 5 4 3 7 7 C 1.38246 * 120.11002 * 0.51572 * 6 5 4 8 8 C 1.50701 * 119.97581 * 179.76190 * 7 6 5 9 9 C 1.50701 * 109.47181 * 269.72654 * 8 7 6 10 10 O 1.20822 * 120.00033 * 5.57351 * 9 8 7 11 11 O 1.34224 * 119.99887 * 185.56980 * 9 8 7 12 12 C 1.45200 * 117.00188 * 185.15381 * 11 9 8 13 13 C 1.52993 * 109.47126 * 183.79012 * 12 11 9 14 14 C 1.50701 * 115.55132 * 294.97158 * 13 12 11 15 15 H 1.07995 * 120.00497 * 114.84672 * 14 13 12 16 16 C 1.37883 * 119.99789 * 294.56672 * 14 13 12 17 17 N 1.31512 * 119.99997 * 174.21564 * 16 14 13 18 18 Si 1.86804 * 119.99813 * 354.21796 * 16 14 13 19 19 H 1.48501 * 109.46931 * 93.43311 * 18 16 14 20 20 H 1.48501 * 109.46817 * 213.43055 * 18 16 14 21 21 H 1.48492 * 109.47056 * 333.43022 * 18 16 14 22 22 C 1.53006 * 117.50168 * 80.64283 * 13 12 11 23 23 C 1.53003 * 117.50019 * 149.30227 * 13 12 11 24 24 C 1.38168 * 120.05540 * 359.49008 * 7 6 5 25 25 H 1.09001 * 109.46736 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46739 * 299.99932 * 1 2 3 27 27 H 1.09000 * 109.46653 * 60.00229 * 1 2 3 28 28 H 1.08006 * 120.02863 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.97449 * 180.02562 * 5 4 3 30 30 H 1.07995 * 119.94967 * 180.27955 * 6 5 4 31 31 H 1.08997 * 109.46911 * 149.72267 * 8 7 6 32 32 H 1.09002 * 109.46362 * 29.72660 * 8 7 6 33 33 H 1.08996 * 109.46961 * 63.78967 * 12 11 9 34 34 H 1.08999 * 109.46929 * 303.78915 * 12 11 9 35 35 H 0.96999 * 120.00184 * 180.02562 * 17 16 14 36 36 H 1.09000 * 117.49390 * 215.00076 * 22 13 12 37 37 H 1.08994 * 117.49330 * 0.02562 * 22 13 12 38 38 H 1.09005 * 117.49660 * 359.97366 * 23 13 12 39 39 H 1.08998 * 117.50478 * 144.97245 * 23 13 12 40 40 H 1.07997 * 120.03238 * 180.23742 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0065 7 6 4.0560 2.5172 0.0007 8 6 5.5609 2.5982 0.0013 9 6 6.0630 2.6256 -1.4194 10 8 5.2785 2.6855 -2.3363 11 8 7.3817 2.5837 -1.6660 12 6 7.7987 2.7295 -3.0491 13 6 9.3164 2.5621 -3.1446 14 6 10.1322 3.6196 -2.4465 15 1 10.7485 3.3551 -1.6000 16 6 10.0963 4.9239 -2.8922 17 7 10.7163 5.8669 -2.2170 18 14 9.1668 5.3516 -4.4552 19 1 7.7843 5.7697 -4.1101 20 1 9.8600 6.4629 -5.1549 21 1 9.1173 4.1622 -5.3427 22 6 9.8706 1.1360 -3.1567 23 6 9.8823 1.9730 -4.4383 24 6 3.4312 1.2849 0.0001 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 0.2128 2.3204 0.0005 29 1 1.3340 4.5114 0.0019 30 1 3.7923 4.6380 0.0115 31 1 5.9713 1.7289 0.5150 32 1 5.8755 3.5063 0.5155 33 1 7.5188 3.7190 -3.4105 34 1 7.3102 1.9687 -3.6580 35 1 10.6907 6.7845 -2.5303 36 1 10.8252 0.9628 -2.6598 37 1 9.1538 0.3171 -3.0971 38 1 9.1731 1.7042 -5.2213 39 1 10.8443 2.3505 -4.7848 40 1 4.0207 0.3799 -0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174743224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:21 Heat of formation + Delta-G solvation = -71.499229 kcal Electronic energy + Delta-G solvation = -22459.452212 eV Core-core repulsion = 19012.788628 eV Total energy + Delta-G solvation = -3446.663583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.44679 -39.75835 -37.78951 -36.97132 -35.36111 -32.77708 -32.14757 -30.65227 -28.43351 -27.48885 -26.78286 -25.15623 -22.71027 -21.99115 -21.56125 -20.22310 -19.16146 -17.89201 -17.21204 -16.68531 -16.50094 -16.16390 -15.91869 -15.80494 -15.37718 -14.79839 -14.28753 -13.92677 -13.82458 -13.37178 -13.14123 -12.77389 -12.67830 -12.42003 -12.21642 -12.04814 -11.84435 -11.61475 -11.23542 -11.07752 -10.97444 -10.89545 -10.62660 -10.35735 -10.05319 -9.94972 -9.53394 -9.07458 -8.94840 -8.68537 -8.50119 -8.29587 -6.13536 -4.13893 1.15865 1.37662 2.65380 3.03831 3.19932 3.25611 3.35934 3.40724 3.78058 4.38361 4.54729 4.64116 4.83458 4.86251 4.88636 4.91687 5.09646 5.17769 5.19548 5.24579 5.36675 5.38283 5.57039 5.61812 5.65973 5.88060 5.91588 5.99268 6.14019 6.16096 6.31909 6.33826 6.46053 6.50212 6.62163 6.65751 6.87142 7.07660 7.17010 7.24796 7.68799 8.29052 8.48313 8.90384 9.48983 10.98290 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024333 B = 0.003603 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.431432 B = 7769.032474 C = 8247.043623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.124 3.876 4 C -0.208 4.208 5 C -0.080 4.080 6 C -0.137 4.137 7 C -0.030 4.030 8 C -0.078 4.078 9 C 0.456 3.544 10 O -0.516 6.516 11 O -0.327 6.327 12 C 0.107 3.893 13 C -0.008 4.008 14 C -0.478 4.478 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.894 5.894 18 Si 0.859 3.141 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.249 1.249 22 C -0.175 4.175 23 C -0.182 4.182 24 C -0.136 4.136 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.265 0.735 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.460 -8.148 5.433 20.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.079 3.921 4 C -0.227 4.227 5 C -0.098 4.098 6 C -0.155 4.155 7 C -0.030 4.030 8 C -0.115 4.115 9 C 0.298 3.702 10 O -0.406 6.406 11 O -0.243 6.243 12 C 0.034 3.966 13 C -0.009 4.009 14 C -0.515 4.515 15 H 0.098 0.902 16 C -0.123 4.123 17 N -0.531 5.531 18 Si 0.687 3.313 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.173 1.173 22 C -0.212 4.212 23 C -0.220 4.220 24 C -0.155 4.155 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.514 -8.136 5.132 20.864 hybrid contribution -0.846 0.630 -1.049 1.487 sum -19.360 -7.506 4.083 21.162 Atomic orbital electron populations 1.23033 0.78566 1.03800 1.01280 1.86068 1.21237 1.27006 1.88899 1.18905 0.92146 0.84112 0.96914 1.21199 0.99819 0.92466 1.09226 1.20876 0.94423 0.96975 0.97545 1.20979 0.93849 0.98072 1.02594 1.19113 0.93695 0.92710 0.97495 1.20315 0.91588 1.07162 0.92445 1.23408 0.81785 0.73003 0.91956 1.90637 1.57248 1.45784 1.46895 1.86572 1.23381 1.81437 1.32862 1.22941 0.95912 1.00062 0.77717 1.19334 0.89213 0.94387 0.97992 1.20239 1.25850 0.90342 1.15052 0.90162 1.24917 0.94807 0.96103 0.96507 1.69888 1.43470 1.01094 1.38647 0.87138 0.79932 0.79163 0.85108 1.20537 1.21415 1.17251 1.22789 1.02292 0.94279 1.01868 1.23084 1.02470 1.05503 0.90929 1.20245 0.91456 0.98056 1.05696 0.88342 0.92727 0.92706 0.85643 0.85682 0.85628 0.86659 0.86173 0.92200 0.93170 0.92508 0.89302 0.90821 0.91094 0.88875 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.72 10.50 -19.41 -0.20 -3.92 16 3 C 0.12 1.57 6.69 -39.21 -0.26 1.31 16 4 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 5 C -0.08 -0.91 10.04 -39.60 -0.40 -1.30 16 6 C -0.14 -1.76 9.70 -39.56 -0.38 -2.14 16 7 C -0.03 -0.41 4.38 -104.64 -0.46 -0.87 16 8 C -0.08 -1.06 5.94 -29.03 -0.17 -1.24 16 9 C 0.46 8.56 7.94 36.01 0.29 8.84 16 10 O -0.52 -10.93 15.72 -18.75 -0.29 -11.22 16 11 O -0.33 -7.04 10.15 -39.24 -0.40 -7.43 16 12 C 0.11 2.42 5.00 37.15 0.19 2.61 16 13 C -0.01 -0.19 1.06 -155.66 -0.17 -0.36 16 14 C -0.48 -13.25 9.33 -34.44 -0.32 -13.57 16 15 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 16 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 17 N -0.89 -26.88 13.96 55.43 0.77 -26.10 16 18 Si 0.86 21.31 24.98 -169.99 -4.25 17.06 16 19 H -0.28 -6.97 7.02 56.52 0.40 -6.57 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.25 -5.77 5.72 56.52 0.32 -5.44 16 22 C -0.18 -3.54 9.96 -26.69 -0.27 -3.81 16 23 C -0.18 -3.80 8.02 -26.69 -0.21 -4.02 16 24 C -0.14 -1.83 9.64 -39.43 -0.38 -2.21 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 27 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 28 H 0.13 1.06 6.30 -52.48 -0.33 0.73 16 29 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.12 1.30 8.08 -51.93 -0.42 0.88 16 32 H 0.12 1.45 8.08 -51.93 -0.42 1.03 16 33 H 0.06 1.44 5.07 -51.93 -0.26 1.18 16 34 H 0.05 1.05 7.95 -51.93 -0.41 0.64 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 40 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -33.14 339.23 -6.93 -40.08 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.67 Total: 2.51 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -2.01 Total: -16.08 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.77 Total: -26.10 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.90 Total: -22.58 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.25 Total: 17.06 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.14 -6.93 -40.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174743224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.421 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds