Wall clock time and date at job start Tue Mar 31 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.35894 * 116.99614 * 2 1 4 4 C 1.38749 * 120.06106 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.94777 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05502 * 359.73816 * 5 4 3 7 7 C 1.38246 * 120.11002 * 0.51572 * 6 5 4 8 8 C 1.50701 * 119.97581 * 179.76190 * 7 6 5 9 9 C 1.50701 * 109.47181 * 269.72654 * 8 7 6 10 10 O 1.20822 * 120.00033 * 5.57351 * 9 8 7 11 11 O 1.34224 * 119.99887 * 185.56980 * 9 8 7 12 12 C 1.45200 * 117.00188 * 185.15381 * 11 9 8 13 13 C 1.52993 * 109.47126 * 183.79012 * 12 11 9 14 14 C 1.50701 * 115.55132 * 294.97158 * 13 12 11 15 15 H 1.07995 * 120.00497 * 114.84672 * 14 13 12 16 16 C 1.37883 * 119.99789 * 294.56672 * 14 13 12 17 17 N 1.31512 * 119.99997 * 174.21564 * 16 14 13 18 18 Si 1.86804 * 119.99813 * 354.21796 * 16 14 13 19 19 H 1.48501 * 109.46931 * 93.43311 * 18 16 14 20 20 H 1.48501 * 109.46817 * 213.43055 * 18 16 14 21 21 H 1.48492 * 109.47056 * 333.43022 * 18 16 14 22 22 C 1.53006 * 117.50168 * 80.64283 * 13 12 11 23 23 C 1.53003 * 117.50019 * 149.30227 * 13 12 11 24 24 C 1.38168 * 120.05540 * 359.49008 * 7 6 5 25 25 H 1.09001 * 109.46736 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46739 * 299.99932 * 1 2 3 27 27 H 1.09000 * 109.46653 * 60.00229 * 1 2 3 28 28 H 1.08006 * 120.02863 * 359.97438 * 4 3 2 29 29 H 1.08003 * 119.97449 * 180.02562 * 5 4 3 30 30 H 1.07995 * 119.94967 * 180.27955 * 6 5 4 31 31 H 1.08997 * 109.46911 * 149.72267 * 8 7 6 32 32 H 1.09002 * 109.46362 * 29.72660 * 8 7 6 33 33 H 1.08996 * 109.46961 * 63.78967 * 12 11 9 34 34 H 1.08999 * 109.46929 * 303.78915 * 12 11 9 35 35 H 0.96999 * 120.00184 * 180.02562 * 17 16 14 36 36 H 1.09000 * 117.49390 * 215.00076 * 22 13 12 37 37 H 1.08994 * 117.49330 * 0.02562 * 22 13 12 38 38 H 1.09005 * 117.49660 * 359.97366 * 23 13 12 39 39 H 1.08998 * 117.50478 * 144.97245 * 23 13 12 40 40 H 1.07997 * 120.03238 * 180.23742 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0065 7 6 4.0560 2.5172 0.0007 8 6 5.5609 2.5982 0.0013 9 6 6.0630 2.6256 -1.4194 10 8 5.2785 2.6855 -2.3363 11 8 7.3817 2.5837 -1.6660 12 6 7.7987 2.7295 -3.0491 13 6 9.3164 2.5621 -3.1446 14 6 10.1322 3.6196 -2.4465 15 1 10.7485 3.3551 -1.6000 16 6 10.0963 4.9239 -2.8922 17 7 10.7163 5.8669 -2.2170 18 14 9.1668 5.3516 -4.4552 19 1 7.7843 5.7697 -4.1101 20 1 9.8600 6.4629 -5.1549 21 1 9.1173 4.1622 -5.3427 22 6 9.8706 1.1360 -3.1567 23 6 9.8823 1.9730 -4.4383 24 6 3.4312 1.2849 0.0001 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 0.2128 2.3204 0.0005 29 1 1.3340 4.5114 0.0019 30 1 3.7923 4.6380 0.0115 31 1 5.9713 1.7289 0.5150 32 1 5.8755 3.5063 0.5155 33 1 7.5188 3.7190 -3.4105 34 1 7.3102 1.9687 -3.6580 35 1 10.6907 6.7845 -2.5303 36 1 10.8252 0.9628 -2.6598 37 1 9.1538 0.3171 -3.0971 38 1 9.1731 1.7042 -5.2213 39 1 10.8443 2.3505 -4.7848 40 1 4.0207 0.3799 -0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174743224.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:19 Heat of formation + Delta-G solvation = -90.968961 kcal Electronic energy + Delta-G solvation = -22460.296483 eV Core-core repulsion = 19012.788628 eV Total energy + Delta-G solvation = -3447.507854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.65952 -40.92767 -39.00085 -38.37130 -36.97730 -34.29496 -33.80012 -31.52073 -29.72129 -28.55738 -27.97042 -27.08491 -23.65000 -23.35057 -22.93978 -21.45972 -21.05136 -18.92285 -18.70206 -18.45721 -17.73883 -17.19157 -17.00624 -16.97888 -16.62530 -16.53748 -15.51148 -15.22395 -14.98919 -14.79057 -14.52069 -14.29339 -14.09316 -13.80605 -13.41900 -13.10477 -13.00400 -12.85433 -12.79570 -12.55066 -12.28239 -12.13173 -12.00494 -11.79905 -11.74996 -11.61382 -11.38670 -10.99724 -10.63972 -10.40499 -9.88623 -9.19186 -8.31726 -6.35557 0.21223 0.45492 1.18527 1.28293 1.34141 1.44712 1.78824 2.31940 2.34956 2.77639 2.96683 3.29504 3.54797 3.83458 3.85844 3.97207 4.06493 4.13112 4.17701 4.28970 4.30861 4.35367 4.39485 4.40290 4.49059 4.59009 4.64733 4.71887 4.73776 4.86876 4.97125 5.02129 5.19761 5.27131 5.42041 5.47095 5.55994 5.59120 5.65861 5.75831 6.29194 6.43592 6.68683 6.78571 7.30508 8.83862 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024333 B = 0.003603 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.431432 B = 7769.032474 C = 8247.043623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.113 3.887 4 C -0.206 4.206 5 C -0.082 4.082 6 C -0.155 4.155 7 C -0.045 4.045 8 C -0.070 4.070 9 C 0.453 3.547 10 O -0.542 6.542 11 O -0.345 6.345 12 C 0.110 3.890 13 C -0.042 4.042 14 C -0.477 4.477 15 H 0.038 0.962 16 C 0.027 3.973 17 N -0.943 5.943 18 Si 0.915 3.085 19 H -0.284 1.284 20 H -0.287 1.287 21 H -0.220 1.220 22 C -0.157 4.157 23 C -0.170 4.170 24 C -0.155 4.155 25 H 0.118 0.882 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.266 0.734 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.786 -9.361 4.597 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.068 3.932 4 C -0.225 4.225 5 C -0.099 4.099 6 C -0.173 4.173 7 C -0.045 4.045 8 C -0.107 4.107 9 C 0.298 3.702 10 O -0.432 6.432 11 O -0.260 6.260 12 C 0.037 3.963 13 C -0.043 4.043 14 C -0.514 4.514 15 H 0.056 0.944 16 C -0.171 4.171 17 N -0.582 5.582 18 Si 0.740 3.260 19 H -0.211 1.211 20 H -0.214 1.214 21 H -0.142 1.142 22 C -0.193 4.193 23 C -0.207 4.207 24 C -0.174 4.174 25 H 0.136 0.864 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.172 0.828 29 H 0.170 0.830 30 H 0.148 0.852 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.848 -9.382 4.297 23.262 hybrid contribution -0.185 0.927 -0.681 1.165 sum -21.033 -8.456 3.615 22.955 Atomic orbital electron populations 1.23354 0.76348 1.05592 1.02315 1.86045 1.23596 1.26731 1.88770 1.19089 0.92183 0.85075 0.96818 1.21543 1.01272 0.91801 1.07870 1.21232 0.94056 0.98247 0.96402 1.21215 0.94873 0.98072 1.03143 1.19153 0.93454 0.93229 0.98710 1.20443 0.92007 1.08969 0.89316 1.24335 0.80545 0.71625 0.93669 1.90610 1.57439 1.47012 1.48185 1.86589 1.25189 1.81881 1.32364 1.22755 0.95221 0.99585 0.78768 1.19243 0.89367 0.95237 1.00461 1.20379 1.25326 0.91790 1.13926 0.94396 1.25662 0.95830 0.96030 0.99557 1.70021 1.45849 1.01588 1.40751 0.86246 0.78041 0.79841 0.81891 1.21082 1.21356 1.14194 1.22859 1.02439 0.93167 1.00883 1.23139 1.02517 1.04120 0.90923 1.20398 0.92350 0.98088 1.06561 0.86363 0.91268 0.91971 0.82845 0.83019 0.85212 0.84293 0.84654 0.94133 0.91224 0.92481 0.89578 0.88066 0.88302 0.89303 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.37 10.50 -92.36 -0.97 -8.34 16 3 C 0.11 2.73 6.69 22.51 0.15 2.88 16 4 C -0.21 -4.13 9.04 22.37 0.20 -3.93 16 5 C -0.08 -1.68 10.04 22.26 0.22 -1.45 16 6 C -0.15 -3.82 9.70 22.28 0.22 -3.60 16 7 C -0.05 -1.20 4.38 -19.88 -0.09 -1.29 16 8 C -0.07 -1.88 5.94 29.10 0.17 -1.70 16 9 C 0.45 16.79 7.94 71.24 0.57 17.35 16 10 O -0.54 -22.64 15.72 21.98 0.35 -22.29 16 11 O -0.34 -14.67 10.15 -51.36 -0.52 -15.19 16 12 C 0.11 4.86 5.00 71.98 0.36 5.22 16 13 C -0.04 -1.93 1.06 -52.93 -0.06 -1.99 16 14 C -0.48 -26.97 9.33 25.60 0.24 -26.73 16 15 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 16 C 0.03 1.58 5.47 84.66 0.46 2.04 16 17 N -0.94 -58.50 13.96 21.45 0.30 -58.20 16 18 Si 0.92 44.02 24.98 68.60 1.71 45.73 16 19 H -0.28 -13.82 7.02 99.48 0.70 -13.12 16 20 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 21 H -0.22 -9.41 5.72 99.48 0.57 -8.84 16 22 C -0.16 -5.98 9.96 30.62 0.30 -5.67 16 23 C -0.17 -6.59 8.02 30.62 0.25 -6.34 16 24 C -0.16 -4.08 9.64 22.37 0.22 -3.87 16 25 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 27 H 0.06 0.65 7.66 -2.39 -0.02 0.64 16 28 H 0.15 2.08 6.30 -2.91 -0.02 2.07 16 29 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.14 2.97 8.08 -2.39 -0.02 2.96 16 32 H 0.14 3.16 8.08 -2.39 -0.02 3.14 16 33 H 0.04 1.92 5.07 -2.39 -0.01 1.91 16 34 H 0.07 2.76 7.95 -2.39 -0.02 2.74 16 35 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 36 H 0.09 3.31 8.14 -2.39 -0.02 3.30 16 37 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 39 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 40 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -73.23 339.23 6.08 -67.15 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.89 Total: 18.90 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 4.33 Total: -27.76 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.30 Total: -58.20 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -1.15 Total: -45.82 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.71 Total: 45.73 kcal Total: -73.23 6.08 -67.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174743224.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.821 kcal (2) G-P(sol) polarization free energy of solvation -73.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds