Wall clock time and date at job start Tue Mar 31 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42897 * 114.00096 * 2 1 4 4 H 1.09003 * 109.47174 * 29.99902 * 3 2 1 5 5 C 1.50703 * 109.46713 * 270.00034 * 3 2 1 6 6 O 1.20818 * 120.00335 * 355.36985 * 5 3 2 7 7 O 1.34235 * 119.99505 * 175.37130 * 5 3 2 8 8 C 1.45201 * 116.99668 * 185.27925 * 7 5 3 9 9 C 1.52999 * 109.46979 * 176.75120 * 8 7 5 10 10 C 1.50693 * 115.55512 * 306.08573 * 9 8 7 11 11 H 1.08004 * 120.00555 * 145.03634 * 10 9 8 12 12 C 1.37885 * 119.99724 * 325.03995 * 10 9 8 13 13 N 1.31508 * 119.99914 * 348.92008 * 12 10 9 14 14 Si 1.86795 * 119.99847 * 168.92449 * 12 10 9 15 15 H 1.48497 * 109.47362 * 90.00085 * 14 12 10 16 16 H 1.48503 * 109.47038 * 210.00102 * 14 12 10 17 17 H 1.48505 * 109.47398 * 329.99859 * 14 12 10 18 18 C 1.52999 * 117.50006 * 160.41233 * 9 8 7 19 19 C 1.53004 * 117.49777 * 91.75370 * 9 8 7 20 20 C 1.50698 * 109.47154 * 150.00350 * 3 2 1 21 21 C 1.38234 * 120.00122 * 35.28226 * 20 3 2 22 22 C 1.38230 * 119.99995 * 179.79255 * 21 20 3 23 23 C 1.38234 * 119.99989 * 0.43768 * 22 21 20 24 24 C 1.38240 * 120.00013 * 359.81830 * 23 22 21 25 25 C 1.38231 * 120.00028 * 359.97068 * 24 23 22 26 26 H 1.08995 * 109.46777 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46561 * 300.00107 * 1 2 3 28 28 H 1.08993 * 109.46976 * 60.00078 * 1 2 3 29 29 H 1.08994 * 109.47132 * 296.75452 * 8 7 5 30 30 H 1.08998 * 109.47047 * 56.75651 * 8 7 5 31 31 H 0.97004 * 119.99899 * 185.04466 * 13 12 10 32 32 H 1.09009 * 117.49622 * 0.02562 * 18 9 8 33 33 H 1.08996 * 117.49895 * 145.01987 * 18 9 8 34 34 H 1.08998 * 117.50518 * 214.97872 * 19 9 8 35 35 H 1.09005 * 117.49468 * 359.97438 * 19 9 8 36 36 H 1.07998 * 120.00240 * 359.97438 * 21 20 3 37 37 H 1.07998 * 120.00258 * 180.27128 * 22 21 20 38 38 H 1.08000 * 120.00454 * 179.83359 * 23 22 21 39 39 H 1.07997 * 119.99851 * 180.02562 * 24 23 22 40 40 H 1.07993 * 120.00334 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2146 1.7642 -1.4209 6 8 1.9737 1.0156 -2.3380 7 8 2.6643 3.0048 -1.6674 8 6 2.7255 3.4195 -3.0576 9 6 3.1811 4.8781 -3.1350 10 6 2.3765 5.8548 -2.3168 11 1 2.8638 6.6972 -1.8485 12 6 1.0180 5.6729 -2.1660 13 7 0.3876 4.7850 -2.9034 14 14 0.0731 6.6877 -0.9144 15 1 -0.4162 7.9344 -1.5559 16 1 -1.0831 5.9028 -0.4120 17 1 0.9674 7.0328 0.2199 18 6 3.7476 5.3714 -4.4679 19 6 4.6814 5.1429 -3.2767 20 6 3.3388 1.2638 0.7103 21 6 4.1468 0.1477 0.6001 22 6 5.3672 0.1113 1.2482 23 6 5.7756 1.1873 2.0138 24 6 4.9652 2.3014 2.1284 25 6 3.7467 2.3396 1.4767 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 3.4340 2.7885 -3.5941 30 1 1.7383 3.3229 -3.5094 31 1 -0.5779 4.7079 -2.8501 32 1 3.7952 4.6570 -5.2898 33 1 3.5384 6.4025 -4.7528 34 1 5.0863 6.0238 -2.7785 35 1 5.3438 4.2780 -3.3144 36 1 3.8260 -0.6947 0.0053 37 1 6.0005 -0.7589 1.1586 38 1 6.7279 1.1579 2.5224 39 1 5.2844 3.1422 2.7262 40 1 3.1133 3.2097 1.5665 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174743494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:20 Heat of formation + Delta-G solvation = -73.146877 kcal Electronic energy + Delta-G solvation = -23671.021024 eV Core-core repulsion = 20224.285993 eV Total energy + Delta-G solvation = -3446.735031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.12577 -38.78186 -37.53055 -36.51800 -34.93387 -32.21615 -32.13459 -30.77394 -27.86983 -26.71927 -25.73870 -25.10214 -22.41104 -21.94329 -21.24574 -20.13199 -19.19758 -17.37955 -16.91254 -16.81108 -16.27449 -15.72042 -15.35506 -15.03808 -14.54195 -14.43196 -14.34412 -13.96388 -13.51678 -13.23380 -13.03507 -12.68969 -12.38150 -11.99368 -11.82341 -11.62443 -11.39937 -11.04272 -11.01348 -10.86736 -10.79407 -10.54686 -10.43828 -10.35912 -9.77554 -9.47930 -9.30472 -9.12997 -8.80311 -8.77802 -8.58940 -8.14875 -6.08878 -4.12893 1.37001 1.54715 2.89999 3.21010 3.23681 3.29106 3.33680 3.74755 4.16675 4.31572 4.77307 4.92805 4.98400 5.11528 5.17657 5.27371 5.37360 5.44693 5.53903 5.59718 5.66285 5.72083 5.78601 6.02042 6.03500 6.16270 6.20850 6.46342 6.53312 6.60625 6.61062 6.64278 6.64443 6.79062 6.95585 7.05075 7.09959 7.24472 7.37450 7.54112 7.85670 8.31175 8.62638 8.82748 9.46417 10.92451 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.006132 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.487574 B = 4565.483741 C = 4978.482118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.141 3.859 4 H 0.104 0.896 5 C 0.440 3.560 6 O -0.510 6.510 7 O -0.320 6.320 8 C 0.116 3.884 9 C 0.048 3.952 10 C -0.479 4.479 11 H 0.063 0.937 12 C 0.074 3.926 13 N -0.885 5.885 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.270 1.270 18 C -0.193 4.193 19 C -0.208 4.208 20 C -0.085 4.085 21 C -0.088 4.088 22 C -0.128 4.128 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.088 4.088 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.025 0.975 30 H 0.113 0.887 31 H 0.262 0.738 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 -7.458 9.280 12.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.272 6.272 3 C 0.081 3.919 4 H 0.121 0.879 5 C 0.281 3.719 6 O -0.400 6.400 7 O -0.235 6.235 8 C 0.043 3.957 9 C 0.047 3.953 10 C -0.516 4.516 11 H 0.081 0.919 12 C -0.129 4.129 13 N -0.522 5.522 14 Si 0.720 3.280 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.195 1.195 18 C -0.231 4.231 19 C -0.245 4.245 20 C -0.085 4.085 21 C -0.106 4.106 22 C -0.146 4.146 23 C -0.133 4.133 24 C -0.140 4.140 25 C -0.106 4.106 26 H 0.109 0.891 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.231 -7.936 8.993 12.718 hybrid contribution -0.771 0.751 0.245 1.104 sum 3.460 -7.185 9.238 12.204 Atomic orbital electron populations 1.22919 0.80158 1.03185 1.00656 1.87941 1.20479 1.24500 1.94322 1.20271 0.94492 0.86710 0.90380 0.87860 1.23799 0.74565 0.81607 0.91904 1.90586 1.47487 1.55619 1.46305 1.86462 1.74206 1.29251 1.33534 1.22808 1.03130 0.93095 0.76667 1.18882 0.89654 0.91665 0.95052 1.20426 0.92127 1.09053 1.30019 0.91929 1.24940 0.97610 0.94939 0.95405 1.69804 1.08584 1.34876 1.38961 0.86578 0.79418 0.79946 0.82103 1.20598 1.21085 1.19515 1.22970 1.06847 1.01090 0.92202 1.22955 0.95502 1.01609 1.04467 1.19297 0.94413 0.95822 0.98963 1.21015 0.93526 0.97696 0.98362 1.21098 0.96383 0.98870 0.98269 1.21175 0.99466 0.93868 0.98827 1.21080 0.94361 0.98302 1.00238 1.21043 0.96950 0.97420 0.95166 0.89063 0.93701 0.93114 0.95646 0.86959 0.92753 0.91489 0.89767 0.90302 0.91304 0.85457 0.86068 0.86182 0.85724 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.81 101.05 1.09 1.46 16 2 O -0.35 -5.94 9.04 -55.14 -0.50 -6.43 16 3 C 0.14 2.50 2.84 -29.03 -0.08 2.41 16 4 H 0.10 1.67 7.69 -51.93 -0.40 1.27 16 5 C 0.44 9.69 7.22 36.01 0.26 9.95 16 6 O -0.51 -12.35 16.26 -25.46 -0.41 -12.76 16 7 O -0.32 -7.70 9.86 -39.27 -0.39 -8.09 16 8 C 0.12 2.91 4.53 37.16 0.17 3.08 16 9 C 0.05 1.20 2.12 -155.66 -0.33 0.87 16 10 C -0.48 -12.81 8.77 -34.44 -0.30 -13.11 16 11 H 0.06 1.66 7.84 -52.48 -0.41 1.25 16 12 C 0.07 1.95 5.18 -17.82 -0.09 1.86 16 13 N -0.88 -24.20 10.77 55.43 0.60 -23.61 16 14 Si 0.89 20.38 29.55 -169.99 -5.02 15.36 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 C -0.19 -4.35 9.96 -26.69 -0.27 -4.61 16 19 C -0.21 -4.56 9.92 -26.69 -0.26 -4.82 16 20 C -0.08 -1.37 4.97 -104.62 -0.52 -1.89 16 21 C -0.09 -1.32 9.35 -39.59 -0.37 -1.69 16 22 C -0.13 -1.63 10.05 -39.59 -0.40 -2.02 16 23 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 24 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 25 C -0.09 -1.31 9.68 -39.58 -0.38 -1.69 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.04 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.11 3.09 6.01 -51.93 -0.31 2.78 16 31 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 32 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 33 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 34 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.13 1.92 7.64 -52.49 -0.40 1.52 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -30.35 347.05 -8.51 -38.86 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.73 Total: 5.40 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -2.28 Total: -13.96 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.60 Total: -23.61 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -1.30 Total: -27.28 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.35 -8.51 -38.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174743494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.291 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds