Wall clock time and date at job start Tue Mar 31 2020 06:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42897 * 114.00096 * 2 1 4 4 H 1.09003 * 109.47174 * 29.99902 * 3 2 1 5 5 C 1.50703 * 109.46713 * 270.00034 * 3 2 1 6 6 O 1.20818 * 120.00335 * 355.36985 * 5 3 2 7 7 O 1.34235 * 119.99505 * 175.37130 * 5 3 2 8 8 C 1.45201 * 116.99668 * 185.27925 * 7 5 3 9 9 C 1.52999 * 109.46979 * 176.75120 * 8 7 5 10 10 C 1.50693 * 115.55512 * 306.08573 * 9 8 7 11 11 H 1.08004 * 120.00555 * 145.03634 * 10 9 8 12 12 C 1.37885 * 119.99724 * 325.03995 * 10 9 8 13 13 N 1.31508 * 119.99914 * 348.92008 * 12 10 9 14 14 Si 1.86795 * 119.99847 * 168.92449 * 12 10 9 15 15 H 1.48497 * 109.47362 * 90.00085 * 14 12 10 16 16 H 1.48503 * 109.47038 * 210.00102 * 14 12 10 17 17 H 1.48505 * 109.47398 * 329.99859 * 14 12 10 18 18 C 1.52999 * 117.50006 * 160.41233 * 9 8 7 19 19 C 1.53004 * 117.49777 * 91.75370 * 9 8 7 20 20 C 1.50698 * 109.47154 * 150.00350 * 3 2 1 21 21 C 1.38234 * 120.00122 * 35.28226 * 20 3 2 22 22 C 1.38230 * 119.99995 * 179.79255 * 21 20 3 23 23 C 1.38234 * 119.99989 * 0.43768 * 22 21 20 24 24 C 1.38240 * 120.00013 * 359.81830 * 23 22 21 25 25 C 1.38231 * 120.00028 * 359.97068 * 24 23 22 26 26 H 1.08995 * 109.46777 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46561 * 300.00107 * 1 2 3 28 28 H 1.08993 * 109.46976 * 60.00078 * 1 2 3 29 29 H 1.08994 * 109.47132 * 296.75452 * 8 7 5 30 30 H 1.08998 * 109.47047 * 56.75651 * 8 7 5 31 31 H 0.97004 * 119.99899 * 185.04466 * 13 12 10 32 32 H 1.09009 * 117.49622 * 0.02562 * 18 9 8 33 33 H 1.08996 * 117.49895 * 145.01987 * 18 9 8 34 34 H 1.08998 * 117.50518 * 214.97872 * 19 9 8 35 35 H 1.09005 * 117.49468 * 359.97438 * 19 9 8 36 36 H 1.07998 * 120.00240 * 359.97438 * 21 20 3 37 37 H 1.07998 * 120.00258 * 180.27128 * 22 21 20 38 38 H 1.08000 * 120.00454 * 179.83359 * 23 22 21 39 39 H 1.07997 * 119.99851 * 180.02562 * 24 23 22 40 40 H 1.07993 * 120.00334 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2146 1.7642 -1.4209 6 8 1.9737 1.0156 -2.3380 7 8 2.6643 3.0048 -1.6674 8 6 2.7255 3.4195 -3.0576 9 6 3.1811 4.8781 -3.1350 10 6 2.3765 5.8548 -2.3168 11 1 2.8638 6.6972 -1.8485 12 6 1.0180 5.6729 -2.1660 13 7 0.3876 4.7850 -2.9034 14 14 0.0731 6.6877 -0.9144 15 1 -0.4162 7.9344 -1.5559 16 1 -1.0831 5.9028 -0.4120 17 1 0.9674 7.0328 0.2199 18 6 3.7476 5.3714 -4.4679 19 6 4.6814 5.1429 -3.2767 20 6 3.3388 1.2638 0.7103 21 6 4.1468 0.1477 0.6001 22 6 5.3672 0.1113 1.2482 23 6 5.7756 1.1873 2.0138 24 6 4.9652 2.3014 2.1284 25 6 3.7467 2.3396 1.4767 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 3.4340 2.7885 -3.5941 30 1 1.7383 3.3229 -3.5094 31 1 -0.5779 4.7079 -2.8501 32 1 3.7952 4.6570 -5.2898 33 1 3.5384 6.4025 -4.7528 34 1 5.0863 6.0238 -2.7785 35 1 5.3438 4.2780 -3.3144 36 1 3.8260 -0.6947 0.0053 37 1 6.0005 -0.7589 1.1586 38 1 6.7279 1.1579 2.5224 39 1 5.2844 3.1422 2.7262 40 1 3.1133 3.2097 1.5665 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174743494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:20 Heat of formation + Delta-G solvation = -87.842037 kcal Electronic energy + Delta-G solvation = -23671.658254 eV Core-core repulsion = 20224.285993 eV Total energy + Delta-G solvation = -3447.372261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69304 -40.09886 -38.95118 -38.23426 -36.77060 -34.20409 -33.30879 -31.80524 -29.28806 -28.24361 -27.51470 -26.73584 -23.45657 -23.26341 -22.97444 -21.64836 -21.13364 -18.90107 -18.65723 -18.17467 -17.76027 -17.26153 -16.95899 -16.62542 -16.23213 -15.72371 -15.51253 -15.44628 -15.04121 -14.65801 -14.24791 -14.01329 -13.85192 -13.66242 -13.44946 -13.27317 -12.86562 -12.76972 -12.57590 -12.34396 -12.15864 -12.10646 -12.03005 -11.88615 -11.55298 -11.37729 -11.09382 -10.83930 -10.67389 -10.08721 -9.81901 -9.73681 -8.08249 -6.18924 0.28673 0.50604 1.18951 1.40418 1.43224 1.53659 1.68777 2.41007 2.55476 2.92342 3.03127 3.52777 3.56525 3.74307 3.83058 4.10444 4.17780 4.18707 4.30990 4.33629 4.37918 4.41748 4.55733 4.62806 4.67863 4.71709 4.73091 4.88953 4.94532 4.99472 5.15098 5.15327 5.36959 5.48894 5.49963 5.56524 5.60560 5.71442 5.80412 5.83160 6.08309 6.32057 6.75459 6.88252 7.42875 8.91701 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.006132 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.487574 B = 4565.483741 C = 4978.482118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.363 6.363 3 C 0.150 3.850 4 H 0.114 0.886 5 C 0.434 3.566 6 O -0.541 6.541 7 O -0.329 6.329 8 C 0.125 3.875 9 C 0.010 3.990 10 C -0.495 4.495 11 H 0.059 0.941 12 C 0.031 3.969 13 N -0.910 5.910 14 Si 0.949 3.051 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.262 1.262 18 C -0.187 4.187 19 C -0.185 4.185 20 C -0.108 4.108 21 C -0.105 4.105 22 C -0.127 4.127 23 C -0.108 4.108 24 C -0.122 4.122 25 C -0.104 4.104 26 H 0.119 0.881 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.082 0.918 31 H 0.260 0.740 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.845 -7.299 11.260 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.281 6.281 3 C 0.090 3.910 4 H 0.132 0.868 5 C 0.278 3.722 6 O -0.432 6.432 7 O -0.244 6.244 8 C 0.052 3.948 9 C 0.010 3.990 10 C -0.532 4.532 11 H 0.077 0.923 12 C -0.169 4.169 13 N -0.549 5.549 14 Si 0.774 3.226 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.186 1.186 18 C -0.225 4.225 19 C -0.222 4.222 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.145 4.145 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.122 4.122 26 H 0.137 0.863 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.135 0.865 37 H 0.166 0.834 38 H 0.174 0.826 39 H 0.168 0.832 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.724 -7.773 10.980 14.620 hybrid contribution -1.185 0.650 -0.380 1.404 sum 4.540 -7.123 10.600 13.554 Atomic orbital electron populations 1.23153 0.78761 1.05061 1.00578 1.87942 1.22069 1.24087 1.94018 1.20314 0.96080 0.87176 0.87441 0.86846 1.24850 0.73141 0.80569 0.93675 1.90550 1.48784 1.56102 1.47803 1.86471 1.74666 1.30430 1.32813 1.22529 1.01364 0.93577 0.77338 1.19021 0.91839 0.91250 0.96926 1.20651 0.92719 1.09357 1.30515 0.92285 1.25618 0.98411 0.96049 0.96799 1.69955 1.08517 1.36178 1.40232 0.85685 0.78225 0.78552 0.80123 1.20214 1.20873 1.18615 1.22981 1.06227 1.01269 0.92024 1.22964 0.93832 1.02325 1.03125 1.19303 0.94055 0.97124 1.00319 1.21091 0.94742 0.97255 0.99276 1.21443 0.95524 1.00181 0.97303 1.21614 1.00432 0.92773 0.97738 1.21440 0.93408 0.99516 0.99655 1.21180 0.98161 0.97019 0.95865 0.86317 0.91342 0.95535 0.95575 0.89989 0.93037 0.90357 0.89718 0.89352 0.89832 0.86457 0.83356 0.82596 0.83176 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 10.81 113.37 1.23 1.77 16 2 O -0.36 -12.28 9.04 -129.94 -1.18 -13.45 16 3 C 0.15 5.38 2.84 29.10 0.08 5.47 16 4 H 0.11 3.74 7.69 -2.39 -0.02 3.72 16 5 C 0.43 19.75 7.22 71.24 0.51 20.26 16 6 O -0.54 -27.29 16.26 28.41 0.46 -26.83 16 7 O -0.33 -16.24 9.86 -51.46 -0.51 -16.75 16 8 C 0.13 6.45 4.53 71.98 0.33 6.78 16 9 C 0.01 0.51 2.12 -52.93 -0.11 0.39 16 10 C -0.50 -26.57 8.77 25.60 0.22 -26.34 16 11 H 0.06 3.12 7.84 -2.91 -0.02 3.09 16 12 C 0.03 1.65 5.18 84.66 0.44 2.09 16 13 N -0.91 -51.02 10.77 21.45 0.23 -50.79 16 14 Si 0.95 41.82 29.55 68.60 2.03 43.84 16 15 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 18 C -0.19 -8.30 9.96 30.62 0.30 -7.99 16 19 C -0.19 -7.86 9.92 30.62 0.30 -7.56 16 20 C -0.11 -3.47 4.97 -19.87 -0.10 -3.57 16 21 C -0.11 -3.11 9.35 22.27 0.21 -2.90 16 22 C -0.13 -2.90 10.05 22.27 0.22 -2.67 16 23 C -0.11 -2.19 10.05 22.27 0.22 -1.96 16 24 C -0.12 -2.81 10.05 22.27 0.22 -2.58 16 25 C -0.10 -3.00 9.68 22.27 0.22 -2.79 16 26 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.07 1.53 8.09 -2.39 -0.02 1.51 16 28 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 30 H 0.08 4.72 6.01 -2.39 -0.01 4.70 16 31 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 32 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 33 H 0.08 3.70 8.14 -2.39 -0.02 3.68 16 34 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 35 H 0.08 3.27 8.14 -2.38 -0.02 3.26 16 36 H 0.12 3.59 7.64 -2.91 -0.02 3.56 16 37 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 38 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 40 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -66.30 347.05 6.37 -59.93 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 1.02 Total: 25.66 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 4.30 Total: -21.61 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.23 Total: -50.79 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -1.22 Total: -57.03 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -66.30 6.37 -59.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174743494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.912 kcal (2) G-P(sol) polarization free energy of solvation -66.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds