Wall clock time and date at job start Tue Mar 31 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00072 * 2 1 4 4 H 1.09003 * 109.47185 * 30.00898 * 3 2 1 5 5 C 1.50704 * 109.46857 * 150.00002 * 3 2 1 6 6 O 1.20827 * 120.00006 * 6.56439 * 5 3 2 7 7 O 1.34229 * 120.00022 * 186.55687 * 5 3 2 8 8 C 1.45205 * 117.00302 * 185.08430 * 7 5 3 9 9 C 1.52989 * 109.47285 * 175.08317 * 8 7 5 10 10 C 1.50701 * 115.55381 * 65.30679 * 9 8 7 11 11 H 1.07997 * 120.00149 * 265.62283 * 10 9 8 12 12 C 1.37875 * 119.99847 * 85.60707 * 10 9 8 13 13 N 1.31525 * 119.99987 * 184.53300 * 12 10 9 14 14 Si 1.86801 * 120.00226 * 4.53793 * 12 10 9 15 15 H 1.48494 * 109.47158 * 94.35795 * 14 12 10 16 16 H 1.48506 * 109.47205 * 214.35857 * 14 12 10 17 17 H 1.48498 * 109.46796 * 334.35599 * 14 12 10 18 18 C 1.53001 * 117.50304 * 279.63750 * 9 8 7 19 19 C 1.53005 * 117.49898 * 210.97429 * 9 8 7 20 20 C 1.50697 * 109.47483 * 270.00264 * 3 2 1 21 21 C 1.38238 * 119.99931 * 326.19409 * 20 3 2 22 22 C 1.38234 * 119.99813 * 179.78608 * 21 20 3 23 23 C 1.38236 * 119.99893 * 0.44366 * 22 21 20 24 24 C 1.38233 * 120.00302 * 359.81435 * 23 22 21 25 25 C 1.38234 * 120.00015 * 146.46741 * 20 3 2 26 26 H 1.09005 * 109.47218 * 299.99347 * 1 2 3 27 27 H 1.09006 * 109.47458 * 59.99177 * 1 2 3 28 28 H 1.08997 * 109.47493 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46809 * 295.09023 * 8 7 5 30 30 H 1.09000 * 109.46820 * 55.08396 * 8 7 5 31 31 H 0.96995 * 120.00074 * 180.02562 * 13 12 10 32 32 H 1.09005 * 117.49493 * 359.97438 * 18 9 8 33 33 H 1.08998 * 117.50182 * 145.02160 * 18 9 8 34 34 H 1.09003 * 117.50001 * 214.98129 * 19 9 8 35 35 H 1.08991 * 117.49702 * 359.97438 * 19 9 8 36 36 H 1.08000 * 119.99943 * 0.02562 * 21 20 3 37 37 H 1.08002 * 119.99895 * 180.27513 * 22 21 20 38 38 H 1.08004 * 119.99757 * 179.83348 * 23 22 21 39 39 H 1.07999 * 120.00515 * 180.02562 * 24 23 22 40 40 H 1.08008 * 120.00049 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5140 5 6 3.3386 1.2637 0.7104 6 8 3.8012 0.2053 1.0649 7 8 4.0079 2.4025 0.9493 8 6 5.3309 2.2791 1.5349 9 6 5.9822 3.6609 1.6192 10 6 5.3122 4.6397 2.5487 11 1 4.5822 5.3365 2.1642 12 6 5.6311 4.6455 3.8900 13 7 4.9832 5.4373 4.7166 14 14 6.9832 3.5288 4.5336 15 1 8.2653 4.2770 4.5747 16 1 6.6351 3.0676 5.9016 17 1 7.1241 2.3542 3.6360 18 6 6.6212 4.2196 0.3462 19 6 7.5057 3.7325 1.4967 20 6 2.2145 1.7644 -1.4208 21 6 2.5352 0.8472 -2.4041 22 6 2.7182 1.2677 -3.7081 23 6 2.5896 2.6065 -4.0272 24 6 2.2741 3.5244 -3.0429 25 6 2.0867 3.1034 -1.7397 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 5.2472 1.8551 2.5355 30 1 5.9437 1.6259 0.9137 31 1 5.2077 5.4417 5.6602 32 1 6.5779 3.6025 -0.5513 33 1 6.5572 5.2952 0.1812 34 1 8.0232 4.4878 2.0882 35 1 8.0439 2.7951 1.3565 36 1 2.6389 -0.1983 -2.1541 37 1 2.9644 0.5505 -4.4772 38 1 2.7353 2.9354 -5.0456 39 1 2.1732 4.5704 -3.2922 40 1 1.8401 3.8205 -0.9706 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174743503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:22 Heat of formation + Delta-G solvation = -88.257637 kcal Electronic energy + Delta-G solvation = -23296.024062 eV Core-core repulsion = 19848.633779 eV Total energy + Delta-G solvation = -3447.390283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.81706 -40.25650 -38.99729 -38.42099 -37.03987 -34.26753 -33.20621 -31.79790 -29.64670 -28.59555 -27.47524 -26.61929 -23.49620 -23.46803 -23.18881 -21.73289 -21.06312 -19.00423 -18.66760 -18.29381 -17.78408 -17.43467 -17.03594 -16.77898 -16.34696 -15.78401 -15.50802 -15.44353 -14.95941 -14.74861 -14.52987 -14.25765 -14.12842 -13.85230 -13.65041 -13.32694 -13.07336 -12.85370 -12.55577 -12.30509 -12.20828 -12.05459 -11.94009 -11.80304 -11.71095 -11.49594 -11.01381 -10.92198 -10.61316 -10.40495 -9.83200 -9.76826 -8.31541 -6.38183 0.25251 0.49258 1.06609 1.29902 1.33220 1.37209 1.47380 2.33947 2.72234 2.89923 3.01156 3.22754 3.47263 3.67376 3.77252 3.93852 4.10055 4.17623 4.18731 4.25258 4.30741 4.36021 4.47401 4.49961 4.56261 4.61858 4.67460 4.79596 4.79638 4.98249 4.99341 5.14558 5.15915 5.42598 5.46635 5.52091 5.54005 5.60388 5.64418 5.90341 6.06972 6.29123 6.65872 6.71301 7.30536 8.83764 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.005016 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.468749 B = 5580.724550 C = 6221.979464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.378 6.378 3 C 0.150 3.850 4 H 0.120 0.880 5 C 0.457 3.543 6 O -0.530 6.530 7 O -0.336 6.336 8 C 0.115 3.885 9 C -0.037 4.037 10 C -0.479 4.479 11 H 0.038 0.962 12 C 0.023 3.977 13 N -0.944 5.944 14 Si 0.929 3.071 15 H -0.261 1.261 16 H -0.298 1.298 17 H -0.239 1.239 18 C -0.152 4.152 19 C -0.178 4.178 20 C -0.130 4.130 21 C -0.104 4.104 22 C -0.127 4.127 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.103 4.103 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.111 0.889 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.266 0.734 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 -8.023 -17.215 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.296 6.296 3 C 0.090 3.910 4 H 0.138 0.862 5 C 0.300 3.700 6 O -0.419 6.419 7 O -0.251 6.251 8 C 0.042 3.958 9 C -0.038 4.038 10 C -0.517 4.517 11 H 0.056 0.944 12 C -0.175 4.175 13 N -0.583 5.583 14 Si 0.754 3.246 15 H -0.186 1.186 16 H -0.225 1.225 17 H -0.162 1.162 18 C -0.189 4.189 19 C -0.215 4.215 20 C -0.131 4.131 21 C -0.122 4.122 22 C -0.145 4.145 23 C -0.126 4.126 24 C -0.143 4.143 25 C -0.121 4.121 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.129 0.871 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.138 0.862 37 H 0.165 0.835 38 H 0.170 0.830 39 H 0.164 0.836 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.322 -8.425 -16.897 19.912 hybrid contribution 0.289 -0.109 1.272 1.309 sum -6.033 -8.534 -15.626 18.798 Atomic orbital electron populations 1.23180 0.77691 1.04906 1.01540 1.87949 1.22662 1.24164 1.94861 1.20133 0.89780 0.87801 0.93245 0.86212 1.23932 0.87820 0.82024 0.76247 1.90598 1.69274 1.32580 1.49475 1.86543 1.31623 1.33905 1.73049 1.22828 0.79055 0.97848 0.96082 1.19205 0.92214 0.92643 0.99718 1.20318 1.22843 1.16588 0.91922 0.94389 1.25783 0.98327 0.96463 0.96881 1.70032 1.42858 1.41061 1.04354 0.86027 0.80162 0.81082 0.77369 1.18640 1.22496 1.16177 1.22865 1.03320 1.00999 0.91675 1.23089 0.92341 1.02838 1.03256 1.19836 1.05045 0.95061 0.93150 1.21097 0.98090 0.99564 0.93416 1.21436 1.00094 0.97052 0.95907 1.21598 0.97461 0.92896 1.00638 1.21439 0.99448 1.01130 0.92247 1.21217 0.98696 0.94250 0.97964 0.92664 0.92219 0.87060 0.93573 0.91660 0.92494 0.88245 0.89340 0.89389 0.87879 0.86182 0.83549 0.82989 0.83650 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.81 113.37 1.23 1.65 16 2 O -0.38 -10.96 9.00 -129.98 -1.17 -12.13 16 3 C 0.15 4.57 2.84 29.10 0.08 4.65 16 4 H 0.12 3.22 7.71 -2.39 -0.02 3.20 16 5 C 0.46 18.10 7.26 71.24 0.52 18.62 16 6 O -0.53 -23.63 16.25 28.37 0.46 -23.17 16 7 O -0.34 -14.55 10.16 -51.41 -0.52 -15.07 16 8 C 0.12 5.14 4.94 71.98 0.36 5.49 16 9 C -0.04 -1.69 1.04 -52.93 -0.05 -1.75 16 10 C -0.48 -27.04 9.37 25.60 0.24 -26.80 16 11 H 0.04 2.40 8.06 -2.91 -0.02 2.37 16 12 C 0.02 1.35 5.47 84.65 0.46 1.81 16 13 N -0.94 -58.49 13.96 21.45 0.30 -58.19 16 14 Si 0.93 44.12 24.92 68.60 1.71 45.83 16 15 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 16 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 17 H -0.24 -10.48 5.73 99.48 0.57 -9.91 16 18 C -0.15 -5.80 9.96 30.62 0.30 -5.49 16 19 C -0.18 -6.97 7.28 30.62 0.22 -6.75 16 20 C -0.13 -3.56 4.95 -19.87 -0.10 -3.65 16 21 C -0.10 -2.59 9.35 22.27 0.21 -2.38 16 22 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 23 C -0.11 -1.93 10.05 22.27 0.22 -1.71 16 24 C -0.12 -2.55 10.05 22.27 0.22 -2.32 16 25 C -0.10 -2.59 9.69 22.27 0.22 -2.37 16 26 H 0.05 0.96 8.09 -2.38 -0.02 0.94 16 27 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 2.20 7.16 -2.39 -0.02 2.19 16 30 H 0.07 2.63 8.04 -2.39 -0.02 2.61 16 31 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 33 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 34 H 0.09 3.55 7.06 -2.39 -0.02 3.53 16 35 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.12 3.11 7.59 -2.91 -0.02 3.09 16 37 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 39 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 40 H 0.13 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -71.97 342.26 6.02 -65.95 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.89 Total: 20.06 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 4.35 Total: -23.28 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.30 Total: -58.19 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -1.23 Total: -50.36 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.71 Total: 45.83 kcal Total: -71.97 6.02 -65.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174743503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.310 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds