Wall clock time and date at job start Tue Mar 31 2020 06:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99938 * 2 1 4 4 C 1.50696 * 109.47160 * 179.97438 * 3 2 1 5 5 C 1.38372 * 119.84592 * 89.99917 * 4 3 2 6 6 C 1.37942 * 120.15020 * 179.97438 * 5 4 3 7 7 C 1.39625 * 119.84538 * 0.02562 * 6 5 4 8 8 C 1.47734 * 120.14946 * 179.97438 * 7 6 5 9 9 O 1.21473 * 119.99637 * 5.04167 * 8 7 6 10 10 O 1.34710 * 120.00378 * 185.04468 * 8 7 6 11 11 C 1.45195 * 117.00161 * 185.03432 * 10 8 7 12 12 C 1.53001 * 109.47094 * 184.93985 * 11 10 8 13 13 C 1.50702 * 115.54977 * 54.23901 * 12 11 10 14 14 H 1.08000 * 119.99704 * 215.59385 * 13 12 11 15 15 C 1.37876 * 119.99986 * 35.32271 * 13 12 11 16 16 N 1.31512 * 119.99866 * 355.73437 * 15 13 12 17 17 Si 1.86798 * 119.99772 * 175.74055 * 15 13 12 18 18 H 1.48501 * 109.47210 * 90.00088 * 17 15 13 19 19 H 1.48504 * 109.47029 * 209.99476 * 17 15 13 20 20 H 1.48491 * 109.47343 * 329.99579 * 17 15 13 21 21 C 1.52998 * 117.49758 * 199.91077 * 12 11 10 22 22 C 1.53003 * 117.49433 * 268.57149 * 12 11 10 23 23 C 1.39624 * 119.70589 * 0.25322 * 7 6 5 24 24 C 1.37950 * 119.84252 * 359.44819 * 23 7 6 25 25 H 1.09003 * 109.46836 * 60.00319 * 1 2 3 26 26 H 1.09000 * 109.47012 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47378 * 300.00303 * 1 2 3 28 28 H 1.09001 * 109.47057 * 59.99354 * 3 2 1 29 29 H 1.09003 * 109.46992 * 300.00099 * 3 2 1 30 30 H 1.08003 * 119.92605 * 0.02562 * 5 4 3 31 31 H 1.07998 * 120.07992 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47513 * 64.93827 * 11 10 8 33 33 H 1.09005 * 109.47199 * 304.93393 * 11 10 8 34 34 H 0.97003 * 120.00034 * 185.00339 * 16 15 13 35 35 H 1.09002 * 117.49743 * 214.99594 * 21 12 11 36 36 H 1.08998 * 117.50154 * 0.02590 * 21 12 11 37 37 H 1.08999 * 117.50143 * 359.97438 * 22 12 11 38 38 H 1.09001 * 117.49285 * 144.97588 * 22 12 11 39 39 H 1.08002 * 120.08278 * 179.74837 * 23 7 6 40 40 H 1.08000 * 119.92215 * 180.27822 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1995 1.1319 -1.1993 6 6 5.5746 1.0236 -1.2060 7 6 6.2732 0.9684 0.0016 8 6 7.7460 0.8518 0.0023 9 8 8.3591 0.8958 -1.0455 10 8 8.4089 0.6966 1.1646 11 6 9.8595 0.7016 1.1019 12 6 10.4309 0.3919 2.4870 13 6 9.9300 -0.8768 3.1279 14 1 9.7784 -0.9185 4.1964 15 6 9.6601 -1.9823 2.3495 16 7 9.7590 -1.9048 1.0404 17 14 9.1537 -3.5901 3.1545 18 1 7.6754 -3.6324 3.2888 19 1 9.6071 -4.7282 2.3151 20 1 9.7759 -3.6880 4.4992 21 6 11.8811 0.7962 2.7595 22 6 10.7342 1.5762 3.4070 23 6 5.5733 1.0181 1.2088 24 6 4.1986 1.1328 1.2010 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.6579 1.1751 -2.1327 31 1 6.1096 0.9806 -2.1432 32 1 10.2058 1.6828 0.7771 33 1 10.1952 -0.0552 0.3929 34 1 9.4997 -2.6595 0.4889 35 1 12.4730 0.1446 3.4024 36 1 12.4280 1.2832 1.9521 37 1 10.5270 2.5760 3.0254 38 1 10.5711 1.4378 4.4758 39 1 6.1072 0.9719 2.1464 40 1 3.6563 1.1758 2.1339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174750494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:40 Heat of formation + Delta-G solvation = -76.166808 kcal Electronic energy + Delta-G solvation = -22598.714879 eV Core-core repulsion = 19151.848894 eV Total energy + Delta-G solvation = -3446.865985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.87988 -38.80403 -37.57134 -36.61628 -34.89618 -32.20983 -32.13424 -30.90543 -27.90683 -26.55433 -25.68768 -25.19902 -22.55656 -22.40525 -21.24997 -20.07629 -19.14009 -17.36599 -16.70796 -16.61861 -16.23466 -16.00518 -15.48093 -15.29414 -14.56744 -14.48683 -14.41479 -13.93902 -13.46800 -13.37224 -13.03450 -12.59701 -12.49242 -12.05405 -11.82749 -11.70470 -11.47106 -11.25895 -10.99740 -10.94919 -10.75693 -10.48691 -10.32453 -9.95815 -9.93378 -9.53132 -9.27248 -8.96515 -8.87360 -8.80208 -8.73399 -8.23546 -5.96047 -4.10125 0.88579 1.49521 3.03401 3.29326 3.36859 3.38897 3.58077 3.73726 4.16382 4.37937 4.69042 4.73273 4.96419 5.01741 5.04510 5.06244 5.15392 5.19434 5.40497 5.41408 5.51746 5.56675 5.71086 5.92427 6.05591 6.10659 6.22777 6.36602 6.50223 6.52269 6.56181 6.64286 6.70262 6.83187 6.87604 6.95947 6.99859 7.24481 7.49230 7.63997 7.93975 8.34173 8.72165 8.88738 9.52314 10.98388 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.004197 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.767013 B = 6669.831686 C = 7444.031023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.102 3.898 4 C -0.074 4.074 5 C -0.114 4.114 6 C -0.065 4.065 7 C -0.101 4.101 8 C 0.499 3.501 9 O -0.521 6.521 10 O -0.314 6.314 11 C 0.119 3.881 12 C 0.046 3.954 13 C -0.482 4.482 14 H 0.062 0.938 15 C 0.074 3.926 16 N -0.882 5.882 17 Si 0.896 3.104 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.196 4.196 22 C -0.209 4.209 23 C -0.062 4.062 24 C -0.113 4.113 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.020 0.980 33 H 0.120 0.880 34 H 0.263 0.737 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.145 0.855 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.349 7.016 -2.497 17.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.026 3.974 4 C -0.074 4.074 5 C -0.132 4.132 6 C -0.083 4.083 7 C -0.102 4.102 8 C 0.344 3.656 9 O -0.413 6.413 10 O -0.228 6.228 11 C 0.046 3.954 12 C 0.046 3.954 13 C -0.519 4.519 14 H 0.080 0.920 15 C -0.129 4.129 16 N -0.519 5.519 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.234 4.234 22 C -0.246 4.246 23 C -0.081 4.081 24 C -0.131 4.131 25 H 0.059 0.941 26 H 0.105 0.895 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.038 0.962 33 H 0.138 0.862 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.163 0.837 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.971 6.693 -2.926 16.658 hybrid contribution -0.338 -0.626 0.310 0.776 sum -15.309 6.067 -2.616 16.674 Atomic orbital electron populations 1.22763 0.81045 1.02905 0.99908 1.88018 1.19533 1.27294 1.95381 1.21382 0.89887 0.85188 1.00977 1.19742 0.93906 1.00044 0.93753 1.20901 0.93650 1.01098 0.97547 1.21253 0.93722 0.95585 0.97712 1.19467 0.90979 1.05168 0.94591 1.20959 0.88194 0.73446 0.83033 1.90736 1.69780 1.47373 1.33405 1.86478 1.24219 1.80459 1.31665 1.22878 0.73843 0.98578 1.00135 1.18930 0.92346 0.93059 0.91094 1.20440 1.44182 0.93724 0.93543 0.91989 1.24955 0.94336 0.98812 0.94795 1.69757 1.47173 1.31447 1.03570 0.86509 0.78852 0.82950 0.79288 1.20488 1.21114 1.19795 1.22990 0.93227 1.04367 1.02814 1.22951 1.06403 0.96263 0.99025 1.21617 0.93888 0.94081 0.98470 1.21015 0.94037 1.00512 0.97544 0.94081 0.89523 0.94011 0.92215 0.92302 0.85426 0.84492 0.96199 0.86236 0.92687 0.89806 0.91427 0.91289 0.90338 0.83676 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.47 10.69 -35.23 -0.38 -4.84 16 3 C 0.10 1.02 6.05 36.00 0.22 1.24 16 4 C -0.07 -0.94 5.52 -104.53 -0.58 -1.52 16 5 C -0.11 -1.49 9.68 -39.64 -0.38 -1.87 16 6 C -0.06 -1.02 9.60 -39.17 -0.38 -1.39 16 7 C -0.10 -1.86 5.87 -104.98 -0.62 -2.47 16 8 C 0.50 11.26 7.88 34.61 0.27 11.53 16 9 O -0.52 -12.70 16.06 -19.25 -0.31 -13.01 16 10 O -0.31 -7.66 8.99 -40.52 -0.36 -8.03 16 11 C 0.12 2.98 4.45 37.16 0.17 3.14 16 12 C 0.05 1.15 2.21 -155.66 -0.34 0.81 16 13 C -0.48 -13.05 8.79 -34.44 -0.30 -13.35 16 14 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 15 C 0.07 2.00 5.35 -17.82 -0.10 1.91 16 16 N -0.88 -24.79 10.16 55.43 0.56 -24.22 16 17 Si 0.90 21.21 29.54 -169.99 -5.02 16.18 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.20 -4.36 9.96 -26.69 -0.27 -4.62 16 22 C -0.21 -4.52 9.92 -26.69 -0.26 -4.78 16 23 C -0.06 -1.02 9.62 -39.17 -0.38 -1.40 16 24 C -0.11 -1.53 9.68 -39.64 -0.38 -1.92 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.14 2.10 7.66 -52.49 -0.40 1.70 16 32 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.12 3.33 5.76 -51.93 -0.30 3.03 16 34 H 0.26 7.20 8.32 -40.82 -0.34 6.86 16 35 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.15 2.42 7.62 -52.49 -0.40 2.02 16 40 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 346.88 15.07 5.23 5.23 Total: -1.00 -30.99 346.88 -8.21 -39.20 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.71 Total: 2.85 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -2.22 Total: -13.36 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.56 Total: -24.22 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.05 Total: -25.88 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.99 -8.21 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174750494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.964 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds