Wall clock time and date at job start Tue Mar 31 2020 06:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99938 * 2 1 4 4 C 1.50696 * 109.47160 * 179.97438 * 3 2 1 5 5 C 1.38372 * 119.84592 * 89.99917 * 4 3 2 6 6 C 1.37942 * 120.15020 * 179.97438 * 5 4 3 7 7 C 1.39625 * 119.84538 * 0.02562 * 6 5 4 8 8 C 1.47734 * 120.14946 * 179.97438 * 7 6 5 9 9 O 1.21473 * 119.99637 * 5.04167 * 8 7 6 10 10 O 1.34710 * 120.00378 * 185.04468 * 8 7 6 11 11 C 1.45195 * 117.00161 * 185.03432 * 10 8 7 12 12 C 1.53001 * 109.47094 * 184.93985 * 11 10 8 13 13 C 1.50702 * 115.54977 * 54.23901 * 12 11 10 14 14 H 1.08000 * 119.99704 * 215.59385 * 13 12 11 15 15 C 1.37876 * 119.99986 * 35.32271 * 13 12 11 16 16 N 1.31512 * 119.99866 * 355.73437 * 15 13 12 17 17 Si 1.86798 * 119.99772 * 175.74055 * 15 13 12 18 18 H 1.48501 * 109.47210 * 90.00088 * 17 15 13 19 19 H 1.48504 * 109.47029 * 209.99476 * 17 15 13 20 20 H 1.48491 * 109.47343 * 329.99579 * 17 15 13 21 21 C 1.52998 * 117.49758 * 199.91077 * 12 11 10 22 22 C 1.53003 * 117.49433 * 268.57149 * 12 11 10 23 23 C 1.39624 * 119.70589 * 0.25322 * 7 6 5 24 24 C 1.37950 * 119.84252 * 359.44819 * 23 7 6 25 25 H 1.09003 * 109.46836 * 60.00319 * 1 2 3 26 26 H 1.09000 * 109.47012 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47378 * 300.00303 * 1 2 3 28 28 H 1.09001 * 109.47057 * 59.99354 * 3 2 1 29 29 H 1.09003 * 109.46992 * 300.00099 * 3 2 1 30 30 H 1.08003 * 119.92605 * 0.02562 * 5 4 3 31 31 H 1.07998 * 120.07992 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47513 * 64.93827 * 11 10 8 33 33 H 1.09005 * 109.47199 * 304.93393 * 11 10 8 34 34 H 0.97003 * 120.00034 * 185.00339 * 16 15 13 35 35 H 1.09002 * 117.49743 * 214.99594 * 21 12 11 36 36 H 1.08998 * 117.50154 * 0.02590 * 21 12 11 37 37 H 1.08999 * 117.50143 * 359.97438 * 22 12 11 38 38 H 1.09001 * 117.49285 * 144.97588 * 22 12 11 39 39 H 1.08002 * 120.08278 * 179.74837 * 23 7 6 40 40 H 1.08000 * 119.92215 * 180.27822 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1995 1.1319 -1.1993 6 6 5.5746 1.0236 -1.2060 7 6 6.2732 0.9684 0.0016 8 6 7.7460 0.8518 0.0023 9 8 8.3591 0.8958 -1.0455 10 8 8.4089 0.6966 1.1646 11 6 9.8595 0.7016 1.1019 12 6 10.4309 0.3919 2.4870 13 6 9.9300 -0.8768 3.1279 14 1 9.7784 -0.9185 4.1964 15 6 9.6601 -1.9823 2.3495 16 7 9.7590 -1.9048 1.0404 17 14 9.1537 -3.5901 3.1545 18 1 7.6754 -3.6324 3.2888 19 1 9.6071 -4.7282 2.3151 20 1 9.7759 -3.6880 4.4992 21 6 11.8811 0.7962 2.7595 22 6 10.7342 1.5762 3.4070 23 6 5.5733 1.0181 1.2088 24 6 4.1986 1.1328 1.2010 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.6579 1.1751 -2.1327 31 1 6.1096 0.9806 -2.1432 32 1 10.2058 1.6828 0.7771 33 1 10.1952 -0.0552 0.3929 34 1 9.4997 -2.6595 0.4889 35 1 12.4730 0.1446 3.4024 36 1 12.4280 1.2832 1.9521 37 1 10.5270 2.5760 3.0254 38 1 10.5711 1.4378 4.4758 39 1 6.1072 0.9719 2.1464 40 1 3.6563 1.1758 2.1339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174750494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:40 Heat of formation + Delta-G solvation = -92.575690 kcal Electronic energy + Delta-G solvation = -22599.426421 eV Core-core repulsion = 19151.848894 eV Total energy + Delta-G solvation = -3447.577527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39852 -40.10943 -38.65374 -38.25675 -36.73893 -34.20333 -33.31127 -32.05991 -29.06091 -28.02315 -27.39075 -26.44032 -23.77506 -23.63698 -22.99500 -21.51414 -21.09237 -18.90730 -18.55064 -17.64976 -17.30918 -17.19096 -16.93113 -16.76090 -16.47855 -15.79003 -15.52531 -15.41184 -14.96396 -14.53527 -14.48263 -14.05552 -13.68756 -13.53099 -13.37906 -13.11396 -12.90919 -12.73541 -12.54133 -12.32347 -12.17665 -12.13166 -12.06897 -11.77402 -11.38184 -11.18503 -10.91084 -10.69055 -10.61883 -10.18579 -10.01956 -9.99186 -8.00210 -6.20751 -0.37976 0.35226 1.40576 1.42080 1.51725 1.57818 1.94563 2.40992 2.61797 3.03109 3.16833 3.54708 3.72862 3.81080 3.94190 3.97525 4.20530 4.25000 4.31483 4.38779 4.46094 4.55959 4.59301 4.61274 4.66117 4.76077 4.78982 4.91024 4.91978 4.96673 5.02061 5.16876 5.24174 5.35624 5.45080 5.46398 5.51798 5.80046 5.82510 5.86176 6.23568 6.31770 6.76715 6.97532 7.43531 8.91157 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.004197 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.767013 B = 6669.831686 C = 7444.031023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.101 3.899 4 C -0.064 4.064 5 C -0.105 4.105 6 C -0.071 4.071 7 C -0.135 4.135 8 C 0.493 3.507 9 O -0.552 6.552 10 O -0.326 6.326 11 C 0.126 3.874 12 C 0.005 3.995 13 C -0.495 4.495 14 H 0.059 0.941 15 C 0.029 3.971 16 N -0.906 5.906 17 Si 0.953 3.047 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.263 1.263 21 C -0.187 4.187 22 C -0.185 4.185 23 C -0.072 4.072 24 C -0.109 4.109 25 H 0.056 0.944 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.162 0.838 31 H 0.133 0.867 32 H 0.028 0.972 33 H 0.087 0.913 34 H 0.256 0.744 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.939 7.707 -1.840 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.025 3.975 4 C -0.064 4.064 5 C -0.123 4.123 6 C -0.089 4.089 7 C -0.136 4.136 8 C 0.340 3.660 9 O -0.446 6.446 10 O -0.241 6.241 11 C 0.053 3.947 12 C 0.004 3.996 13 C -0.532 4.532 14 H 0.077 0.923 15 C -0.171 4.171 16 N -0.545 5.545 17 Si 0.779 3.221 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.188 1.188 21 C -0.225 4.225 22 C -0.222 4.222 23 C -0.090 4.090 24 C -0.126 4.126 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.179 0.821 31 H 0.151 0.849 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.151 0.849 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.568 7.396 -2.249 19.194 hybrid contribution 0.359 -0.786 0.095 0.870 sum -17.209 6.610 -2.154 18.560 Atomic orbital electron populations 1.22950 0.79062 1.03731 1.01342 1.87957 1.21738 1.28095 1.95713 1.21495 0.87456 0.85196 1.03325 1.20192 0.95962 0.97244 0.93036 1.21258 0.92319 0.99352 0.99379 1.21349 0.95067 0.95904 0.96574 1.19408 0.88482 1.09056 0.96629 1.21782 0.89935 0.72202 0.82099 1.90692 1.70822 1.49085 1.34037 1.86478 1.23850 1.80877 1.32847 1.22625 0.74608 0.97753 0.99743 1.19061 0.94521 0.94159 0.91839 1.20701 1.44194 0.94882 0.93467 0.92319 1.25641 0.94685 1.01600 0.95183 1.69956 1.48255 1.31676 1.04587 0.85625 0.78401 0.79389 0.78733 1.20387 1.21211 1.18757 1.23005 0.92259 1.04112 1.03087 1.22971 1.04479 0.95904 0.98891 1.21589 0.95278 0.94977 0.97201 1.21308 0.92698 0.99256 0.99388 0.92516 0.89147 0.92666 0.90096 0.89843 0.82080 0.84881 0.95424 0.89497 0.93396 0.89676 0.90001 0.89462 0.89500 0.84888 0.82589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -8.25 10.69 -148.98 -1.59 -9.84 16 3 C 0.10 1.60 6.05 71.23 0.43 2.03 16 4 C -0.06 -1.44 5.52 -19.80 -0.11 -1.55 16 5 C -0.11 -2.50 9.68 22.23 0.22 -2.29 16 6 C -0.07 -2.23 9.60 22.53 0.22 -2.01 16 7 C -0.13 -5.10 5.87 -20.10 -0.12 -5.22 16 8 C 0.49 23.37 7.88 70.33 0.55 23.93 16 9 O -0.55 -28.47 16.06 19.92 0.32 -28.15 16 10 O -0.33 -16.62 8.99 -56.20 -0.51 -17.13 16 11 C 0.13 6.57 4.45 71.98 0.32 6.89 16 12 C 0.00 0.23 2.21 -52.93 -0.12 0.11 16 13 C -0.50 -27.17 8.79 25.60 0.23 -26.95 16 14 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 15 C 0.03 1.58 5.35 84.65 0.45 2.03 16 16 N -0.91 -52.78 10.16 21.45 0.22 -52.57 16 17 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 C -0.19 -8.17 9.96 30.62 0.30 -7.87 16 22 C -0.19 -7.79 9.92 30.62 0.30 -7.48 16 23 C -0.07 -2.38 9.62 22.54 0.22 -2.16 16 24 C -0.11 -2.73 9.68 22.23 0.22 -2.51 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 29 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 30 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 31 H 0.13 4.19 7.66 -2.91 -0.02 4.17 16 32 H 0.03 1.35 8.09 -2.39 -0.02 1.33 16 33 H 0.09 5.10 5.76 -2.38 -0.01 5.09 16 34 H 0.26 14.63 8.32 -92.71 -0.77 13.86 16 35 H 0.08 3.66 8.14 -2.39 -0.02 3.64 16 36 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 38 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 39 H 0.13 4.59 7.62 -2.91 -0.02 4.57 16 40 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -69.06 346.88 5.85 -63.21 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 1.03 Total: 19.86 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 4.36 Total: -21.52 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.22 Total: -52.57 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -1.78 Total: -55.11 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -69.06 5.85 -63.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174750494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.368 kcal (2) G-P(sol) polarization free energy of solvation -69.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds