Wall clock time and date at job start Tue Mar 31 2020 06:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99983 * 2 1 4 4 C 1.50706 * 109.47079 * 180.02562 * 3 2 1 5 5 C 1.37966 * 120.07358 * 359.97438 * 4 3 2 6 6 C 1.38346 * 120.14996 * 180.02562 * 5 4 3 7 7 C 1.38397 * 120.30123 * 359.97438 * 6 5 4 8 8 C 1.37922 * 120.14972 * 0.02562 * 7 6 5 9 9 C 1.39609 * 120.07690 * 180.30227 * 4 3 2 10 10 C 1.47728 * 120.15045 * 359.97152 * 9 4 3 11 11 O 1.21471 * 119.99882 * 358.73175 * 10 9 4 12 12 O 1.34709 * 120.00107 * 178.73730 * 10 9 4 13 13 C 1.45193 * 117.00058 * 184.65956 * 12 10 9 14 14 C 1.52998 * 109.47005 * 184.15682 * 13 12 10 15 15 C 1.50701 * 115.55213 * 306.68076 * 14 13 12 16 16 H 1.07999 * 119.99787 * 144.27281 * 15 14 13 17 17 C 1.37878 * 119.99967 * 324.28415 * 15 14 13 18 18 N 1.31511 * 120.00102 * 349.91922 * 17 15 14 19 19 Si 1.86801 * 120.00064 * 169.91759 * 17 15 14 20 20 H 1.48502 * 109.46907 * 59.99797 * 19 17 15 21 21 H 1.48491 * 109.47107 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47044 * 300.00073 * 19 17 15 23 23 C 1.53009 * 117.50024 * 161.01692 * 14 13 12 24 24 C 1.53003 * 117.50282 * 92.35730 * 14 13 12 25 25 H 1.09001 * 109.46813 * 300.00632 * 1 2 3 26 26 H 1.09007 * 109.46940 * 60.00312 * 1 2 3 27 27 H 1.08998 * 109.46960 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47678 * 59.99869 * 3 2 1 29 29 H 1.09001 * 109.46741 * 299.99336 * 3 2 1 30 30 H 1.08002 * 119.92914 * 359.97438 * 5 4 3 31 31 H 1.07997 * 119.84883 * 180.02562 * 6 5 4 32 32 H 1.07994 * 119.92579 * 180.02562 * 7 6 5 33 33 H 1.08000 * 120.07415 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47443 * 304.15402 * 13 12 10 35 35 H 1.08998 * 109.47342 * 64.15322 * 13 12 10 36 36 H 0.96998 * 120.00489 * 185.02834 * 18 17 15 37 37 H 1.09000 * 117.49545 * 359.97438 * 23 14 13 38 38 H 1.08990 * 117.49966 * 145.01785 * 23 14 13 39 39 H 1.08998 * 117.49887 * 214.97807 * 24 14 13 40 40 H 1.09004 * 117.49465 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.1075 -0.0583 -0.0006 6 6 5.4865 -0.1694 -0.0006 7 6 6.2785 0.9656 -0.0013 8 6 5.6968 2.2161 -0.0013 9 6 4.3055 2.3355 0.0056 10 6 3.6755 3.6717 0.0123 11 8 2.4652 3.7726 -0.0110 12 8 4.4432 4.7782 0.0440 13 6 3.7575 6.0533 0.1537 14 6 4.7781 7.1900 0.0706 15 6 5.9302 7.1011 1.0380 16 1 6.9138 7.4316 0.7382 17 6 5.7287 6.5977 2.3057 18 7 4.5067 6.3809 2.7406 19 14 7.1916 6.2234 3.4055 20 1 7.9708 7.4669 3.6329 21 1 6.7099 5.6965 4.7075 22 1 8.0569 5.2099 2.7503 23 6 4.2553 8.5849 -0.2788 24 6 5.0590 7.7879 -1.3094 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 3.4954 -0.9481 0.0004 31 1 5.9471 -1.1463 -0.0010 32 1 7.3544 0.8718 -0.0017 33 1 6.3160 3.1010 -0.0023 34 1 3.0385 6.1505 -0.6598 35 1 3.2345 6.1036 1.1087 36 1 4.3611 6.0963 3.6564 37 1 3.1842 8.6926 -0.4500 38 1 4.7449 9.4381 0.1906 39 1 6.0770 8.1172 -1.5175 40 1 4.5169 7.3711 -2.1583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174751820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:43 Heat of formation + Delta-G solvation = -76.413984 kcal Electronic energy + Delta-G solvation = -23224.754172 eV Core-core repulsion = 19777.877469 eV Total energy + Delta-G solvation = -3446.876703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13071 -38.60547 -37.43380 -36.70174 -35.08623 -32.17949 -31.87078 -31.16949 -27.42301 -26.65760 -25.50142 -25.18524 -23.52463 -21.46216 -21.23109 -20.19661 -19.19798 -17.39465 -16.72987 -16.25468 -16.15398 -15.93009 -15.52629 -15.27866 -14.61638 -14.57792 -14.23767 -14.07840 -13.64766 -13.22812 -12.94715 -12.61377 -12.08904 -12.04488 -11.94129 -11.62130 -11.53429 -11.29483 -10.99218 -10.94412 -10.85708 -10.52737 -10.36694 -9.87325 -9.81120 -9.51183 -9.42601 -9.10734 -8.85430 -8.77844 -8.60072 -8.15370 -6.06889 -4.11586 0.95928 1.47782 3.07452 3.27022 3.33404 3.35328 3.49516 3.70324 3.99641 4.34616 4.85643 4.92559 5.04251 5.14702 5.23150 5.32103 5.33778 5.48071 5.57259 5.60873 5.63678 5.71422 5.76542 5.92593 6.01532 6.16776 6.20079 6.38686 6.44587 6.50733 6.54643 6.61753 6.64773 6.80051 6.94839 6.99236 7.18893 7.23220 7.37476 7.47455 7.87041 8.31094 8.57230 8.83942 9.48828 10.94912 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015429 B = 0.005232 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.307915 B = 5350.143995 C = 6121.531864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.398 6.398 3 C 0.105 3.895 4 C -0.031 4.031 5 C -0.117 4.117 6 C -0.094 4.094 7 C -0.138 4.138 8 C -0.057 4.057 9 C -0.113 4.113 10 C 0.499 3.501 11 O -0.527 6.527 12 O -0.316 6.316 13 C 0.117 3.883 14 C 0.048 3.952 15 C -0.484 4.484 16 H 0.062 0.938 17 C 0.076 3.924 18 N -0.884 5.884 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.192 4.192 24 C -0.209 4.209 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.146 0.854 34 H 0.028 0.972 35 H 0.113 0.887 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.296 -12.071 -4.991 13.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.318 6.318 3 C 0.030 3.970 4 C -0.031 4.031 5 C -0.135 4.135 6 C -0.112 4.112 7 C -0.156 4.156 8 C -0.075 4.075 9 C -0.114 4.114 10 C 0.345 3.655 11 O -0.420 6.420 12 O -0.230 6.230 13 C 0.044 3.956 14 C 0.047 3.953 15 C -0.521 4.521 16 H 0.080 0.920 17 C -0.127 4.127 18 N -0.521 5.521 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.230 4.230 24 C -0.247 4.247 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.155 0.845 31 H 0.143 0.857 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.046 0.954 35 H 0.130 0.870 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.617 -12.268 -4.850 13.449 hybrid contribution 0.411 0.270 0.630 0.799 sum -2.206 -11.998 -4.220 12.908 Atomic orbital electron populations 1.22685 0.80821 1.02302 1.00325 1.87743 1.19817 1.28550 1.95675 1.21464 0.89210 0.83494 1.02832 1.19736 0.94437 0.92372 0.96589 1.20892 0.94527 0.97082 1.00996 1.21380 0.93733 0.98707 0.97412 1.21180 1.00277 0.92182 1.01926 1.21600 0.93452 0.98830 0.93583 1.19086 0.94047 0.90147 1.08123 1.21049 0.85322 0.85989 0.73188 1.90711 1.15530 1.88150 1.47618 1.86539 1.40249 1.15170 1.81031 1.22842 0.93261 0.77520 1.01981 1.18882 0.95992 0.88235 0.92147 1.20380 0.93454 1.41602 0.96621 0.91992 1.24914 0.95740 0.94168 0.97841 1.69765 1.19713 1.46121 1.16488 0.86613 0.82741 0.78937 0.79522 1.20243 1.21231 1.19858 1.22968 0.97201 0.98157 1.04693 1.22968 0.99868 1.07961 0.93868 0.93931 0.94027 0.89821 0.90442 0.90555 0.84499 0.85674 0.85352 0.83631 0.95377 0.86962 0.92628 0.91486 0.89760 0.90289 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.01 101.05 1.11 1.49 16 2 O -0.40 -5.58 9.19 -35.23 -0.32 -5.91 16 3 C 0.11 1.68 4.58 36.01 0.16 1.84 16 4 C -0.03 -0.51 5.92 -104.21 -0.62 -1.12 16 5 C -0.12 -1.62 9.37 -39.64 -0.37 -1.99 16 6 C -0.09 -1.15 10.04 -39.48 -0.40 -1.55 16 7 C -0.14 -1.83 10.03 -39.64 -0.40 -2.23 16 8 C -0.06 -0.93 9.62 -39.17 -0.38 -1.31 16 9 C -0.11 -2.07 5.87 -104.98 -0.62 -2.68 16 10 C 0.50 10.76 7.87 34.61 0.27 11.04 16 11 O -0.53 -11.75 13.12 -19.24 -0.25 -12.00 16 12 O -0.32 -7.50 9.11 -40.52 -0.37 -7.87 16 13 C 0.12 2.86 4.61 37.16 0.17 3.04 16 14 C 0.05 1.18 2.12 -155.65 -0.33 0.85 16 15 C -0.48 -12.90 8.76 -34.44 -0.30 -13.20 16 16 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 17 C 0.08 2.04 5.19 -17.82 -0.09 1.94 16 18 N -0.88 -24.32 10.77 55.43 0.60 -23.72 16 19 Si 0.89 20.74 29.55 -169.99 -5.02 15.72 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 C -0.19 -4.26 9.96 -26.69 -0.27 -4.53 16 24 C -0.21 -4.50 9.92 -26.69 -0.26 -4.77 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.33 7.36 -51.93 -0.38 0.95 16 29 H 0.08 1.25 7.33 -51.93 -0.38 0.87 16 30 H 0.14 1.71 7.00 -52.49 -0.37 1.34 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.15 2.50 7.61 -52.49 -0.40 2.10 16 34 H 0.03 0.65 7.94 -51.93 -0.41 0.24 16 35 H 0.11 3.03 6.06 -51.93 -0.31 2.71 16 36 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 39 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 340.49 15.07 5.13 5.13 Total: -1.00 -29.07 340.49 -8.16 -37.23 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.61 Total: 4.60 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.31 Total: -13.18 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.60 Total: -23.72 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.95 Total: -25.78 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.07 -8.16 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174751820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.185 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds