Wall clock time and date at job start Tue Mar 31 2020 06:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99983 * 2 1 4 4 C 1.50706 * 109.47079 * 180.02562 * 3 2 1 5 5 C 1.37966 * 120.07358 * 359.97438 * 4 3 2 6 6 C 1.38346 * 120.14996 * 180.02562 * 5 4 3 7 7 C 1.38397 * 120.30123 * 359.97438 * 6 5 4 8 8 C 1.37922 * 120.14972 * 0.02562 * 7 6 5 9 9 C 1.39609 * 120.07690 * 180.30227 * 4 3 2 10 10 C 1.47728 * 120.15045 * 359.97152 * 9 4 3 11 11 O 1.21471 * 119.99882 * 358.73175 * 10 9 4 12 12 O 1.34709 * 120.00107 * 178.73730 * 10 9 4 13 13 C 1.45193 * 117.00058 * 184.65956 * 12 10 9 14 14 C 1.52998 * 109.47005 * 184.15682 * 13 12 10 15 15 C 1.50701 * 115.55213 * 306.68076 * 14 13 12 16 16 H 1.07999 * 119.99787 * 144.27281 * 15 14 13 17 17 C 1.37878 * 119.99967 * 324.28415 * 15 14 13 18 18 N 1.31511 * 120.00102 * 349.91922 * 17 15 14 19 19 Si 1.86801 * 120.00064 * 169.91759 * 17 15 14 20 20 H 1.48502 * 109.46907 * 59.99797 * 19 17 15 21 21 H 1.48491 * 109.47107 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47044 * 300.00073 * 19 17 15 23 23 C 1.53009 * 117.50024 * 161.01692 * 14 13 12 24 24 C 1.53003 * 117.50282 * 92.35730 * 14 13 12 25 25 H 1.09001 * 109.46813 * 300.00632 * 1 2 3 26 26 H 1.09007 * 109.46940 * 60.00312 * 1 2 3 27 27 H 1.08998 * 109.46960 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47678 * 59.99869 * 3 2 1 29 29 H 1.09001 * 109.46741 * 299.99336 * 3 2 1 30 30 H 1.08002 * 119.92914 * 359.97438 * 5 4 3 31 31 H 1.07997 * 119.84883 * 180.02562 * 6 5 4 32 32 H 1.07994 * 119.92579 * 180.02562 * 7 6 5 33 33 H 1.08000 * 120.07415 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47443 * 304.15402 * 13 12 10 35 35 H 1.08998 * 109.47342 * 64.15322 * 13 12 10 36 36 H 0.96998 * 120.00489 * 185.02834 * 18 17 15 37 37 H 1.09000 * 117.49545 * 359.97438 * 23 14 13 38 38 H 1.08990 * 117.49966 * 145.01785 * 23 14 13 39 39 H 1.08998 * 117.49887 * 214.97807 * 24 14 13 40 40 H 1.09004 * 117.49465 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.1075 -0.0583 -0.0006 6 6 5.4865 -0.1694 -0.0006 7 6 6.2785 0.9656 -0.0013 8 6 5.6968 2.2161 -0.0013 9 6 4.3055 2.3355 0.0056 10 6 3.6755 3.6717 0.0123 11 8 2.4652 3.7726 -0.0110 12 8 4.4432 4.7782 0.0440 13 6 3.7575 6.0533 0.1537 14 6 4.7781 7.1900 0.0706 15 6 5.9302 7.1011 1.0380 16 1 6.9138 7.4316 0.7382 17 6 5.7287 6.5977 2.3057 18 7 4.5067 6.3809 2.7406 19 14 7.1916 6.2234 3.4055 20 1 7.9708 7.4669 3.6329 21 1 6.7099 5.6965 4.7075 22 1 8.0569 5.2099 2.7503 23 6 4.2553 8.5849 -0.2788 24 6 5.0590 7.7879 -1.3094 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 3.4954 -0.9481 0.0004 31 1 5.9471 -1.1463 -0.0010 32 1 7.3544 0.8718 -0.0017 33 1 6.3160 3.1010 -0.0023 34 1 3.0385 6.1505 -0.6598 35 1 3.2345 6.1036 1.1087 36 1 4.3611 6.0963 3.6564 37 1 3.1842 8.6926 -0.4500 38 1 4.7449 9.4381 0.1906 39 1 6.0770 8.1172 -1.5175 40 1 4.5169 7.3711 -2.1583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174751820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:42 Heat of formation + Delta-G solvation = -90.890889 kcal Electronic energy + Delta-G solvation = -23225.381938 eV Core-core repulsion = 19777.877469 eV Total energy + Delta-G solvation = -3447.504469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62811 -40.02409 -38.55477 -38.46216 -36.85117 -34.18938 -33.03686 -32.39628 -28.73333 -28.18483 -27.40589 -26.39399 -24.88414 -23.04514 -22.65490 -21.62767 -21.11551 -18.85331 -18.57190 -17.66513 -17.36856 -17.36021 -16.91220 -16.84814 -16.45843 -15.76531 -15.54175 -15.42347 -15.18283 -14.79147 -14.34915 -13.83265 -13.73397 -13.58256 -13.41644 -13.14561 -12.84182 -12.80589 -12.67073 -12.48563 -12.33776 -12.15372 -12.06439 -11.60496 -11.40590 -11.13233 -11.05719 -10.87527 -10.67422 -10.10154 -10.02277 -9.77511 -8.07660 -6.18548 -0.31566 0.32587 1.41808 1.44688 1.51396 1.57150 1.89719 2.41818 2.61643 2.74884 3.02129 3.53758 3.71170 3.78606 3.99717 4.11497 4.18415 4.31229 4.32722 4.34935 4.42965 4.50302 4.53657 4.57389 4.59140 4.74553 4.77641 4.81299 4.89439 4.96449 5.05289 5.16315 5.31721 5.36292 5.38011 5.46346 5.50391 5.72168 5.80974 5.89695 6.09276 6.32356 6.75522 6.89393 7.44016 8.92209 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015429 B = 0.005232 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.307915 B = 5350.143995 C = 6121.531864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.115 3.885 4 C -0.045 4.045 5 C -0.114 4.114 6 C -0.072 4.072 7 C -0.129 4.129 8 C -0.071 4.071 9 C -0.142 4.142 10 C 0.490 3.510 11 O -0.546 6.546 12 O -0.330 6.330 13 C 0.127 3.873 14 C 0.009 3.991 15 C -0.498 4.498 16 H 0.058 0.942 17 C 0.034 3.966 18 N -0.909 5.909 19 Si 0.948 3.052 20 H -0.269 1.269 21 H -0.288 1.288 22 H -0.266 1.266 23 C -0.185 4.185 24 C -0.187 4.187 25 H 0.041 0.959 26 H 0.045 0.955 27 H 0.113 0.887 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.155 0.845 31 H 0.172 0.828 32 H 0.162 0.838 33 H 0.130 0.870 34 H 0.032 0.968 35 H 0.082 0.918 36 H 0.260 0.740 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 -14.406 -5.547 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C 0.040 3.960 4 C -0.046 4.046 5 C -0.132 4.132 6 C -0.090 4.090 7 C -0.146 4.146 8 C -0.089 4.089 9 C -0.144 4.144 10 C 0.338 3.662 11 O -0.440 6.440 12 O -0.244 6.244 13 C 0.053 3.947 14 C 0.008 3.992 15 C -0.535 4.535 16 H 0.076 0.924 17 C -0.166 4.166 18 N -0.547 5.547 19 Si 0.774 3.226 20 H -0.195 1.195 21 H -0.214 1.214 22 H -0.191 1.191 23 C -0.223 4.223 24 C -0.224 4.224 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.131 0.869 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.173 0.827 31 H 0.190 0.810 32 H 0.180 0.820 33 H 0.148 0.852 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.183 -14.600 -5.421 15.619 hybrid contribution -0.071 0.906 0.757 1.183 sum -1.254 -13.693 -4.664 14.520 Atomic orbital electron populations 1.22952 0.79117 1.04321 1.00554 1.87716 1.21652 1.27063 1.95640 1.21159 0.89609 0.84171 1.01103 1.19878 0.94432 0.92914 0.97326 1.21185 0.95748 0.96280 0.99971 1.21891 0.92801 1.00348 0.93948 1.21556 1.02126 0.90890 1.00071 1.21615 0.92511 1.00082 0.94742 1.19047 0.95152 0.88663 1.11506 1.21786 0.85343 0.86703 0.72379 1.90679 1.16258 1.88459 1.48615 1.86537 1.40822 1.15479 1.81604 1.22547 0.93314 0.78407 1.00388 1.19024 0.96450 0.89464 0.94236 1.20623 0.93879 1.41723 0.97309 0.92389 1.25577 0.97860 0.94098 0.99103 1.69926 1.21323 1.47060 1.16401 0.85755 0.80076 0.79039 0.77759 1.19453 1.21388 1.19072 1.22970 0.98163 0.96712 1.04457 1.22981 1.00415 1.06028 0.92940 0.94000 0.93588 0.86858 0.92751 0.91898 0.82713 0.81027 0.82004 0.85226 0.94937 0.90049 0.93108 0.90190 0.89831 0.89462 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.78 16 2 O -0.40 -10.89 9.19 -148.98 -1.37 -12.26 16 3 C 0.12 3.77 4.58 71.24 0.33 4.10 16 4 C -0.05 -1.47 5.92 -19.60 -0.12 -1.59 16 5 C -0.11 -2.85 9.37 22.23 0.21 -2.64 16 6 C -0.07 -1.45 10.04 22.33 0.22 -1.23 16 7 C -0.13 -3.01 10.03 22.23 0.22 -2.79 16 8 C -0.07 -2.32 9.62 22.54 0.22 -2.11 16 9 C -0.14 -5.34 5.87 -20.10 -0.12 -5.46 16 10 C 0.49 22.26 7.87 70.33 0.55 22.82 16 11 O -0.55 -25.85 13.12 19.93 0.26 -25.59 16 12 O -0.33 -16.37 9.11 -56.19 -0.51 -16.88 16 13 C 0.13 6.47 4.61 71.98 0.33 6.80 16 14 C 0.01 0.43 2.12 -52.92 -0.11 0.32 16 15 C -0.50 -26.96 8.76 25.60 0.22 -26.74 16 16 H 0.06 3.09 7.83 -2.91 -0.02 3.07 16 17 C 0.03 1.83 5.19 84.66 0.44 2.27 16 18 N -0.91 -51.71 10.77 21.45 0.23 -51.48 16 19 Si 0.95 42.85 29.55 68.60 2.03 44.88 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 23 C -0.19 -8.16 9.96 30.62 0.30 -7.86 16 24 C -0.19 -7.87 9.92 30.62 0.30 -7.56 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 2.00 7.36 -2.39 -0.02 1.98 16 29 H 0.06 2.18 7.33 -2.39 -0.02 2.16 16 30 H 0.16 3.32 7.00 -2.91 -0.02 3.30 16 31 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 33 H 0.13 4.56 7.61 -2.91 -0.02 4.54 16 34 H 0.03 1.57 7.94 -2.39 -0.02 1.55 16 35 H 0.08 4.64 6.06 -2.39 -0.01 4.63 16 36 H 0.26 14.32 8.32 -92.71 -0.77 13.55 16 37 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 39 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 40 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 Total: -1.00 -65.00 340.49 5.93 -59.07 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 1.03 Total: 22.13 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 4.26 Total: -19.87 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.23 Total: -51.48 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -1.62 Total: -54.73 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -65.00 5.93 -59.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174751820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.821 kcal (2) G-P(sol) polarization free energy of solvation -65.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds