Wall clock time and date at job start Tue Mar 31 2020 06:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35896 * 117.00064 * 2 1 4 4 C 1.38755 * 120.05978 * 0.25876 * 3 2 1 5 5 C 1.38122 * 119.94793 * 180.31544 * 4 3 2 6 6 C 1.38284 * 120.05140 * 359.67949 * 5 4 3 7 7 C 1.38247 * 120.11566 * 0.02562 * 6 5 4 8 8 C 1.38167 * 120.05226 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.02294 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47092 * 264.99923 * 9 8 7 11 11 O 1.20829 * 120.00077 * 0.02562 * 10 9 8 12 12 O 1.34224 * 119.99958 * 180.02562 * 10 9 8 13 13 C 1.45207 * 117.00145 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47305 * 179.97438 * 13 12 10 15 15 C 1.50701 * 115.54913 * 294.89081 * 14 13 12 16 16 H 1.07995 * 120.00397 * 95.16717 * 15 14 13 17 17 C 1.37878 * 119.99626 * 274.88524 * 15 14 13 18 18 N 1.31520 * 120.00038 * 6.39360 * 17 15 14 19 19 Si 1.86796 * 120.00205 * 186.39563 * 17 15 14 20 20 H 1.48504 * 109.47020 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47190 * 119.99838 * 19 17 15 22 22 H 1.48496 * 109.47249 * 239.99932 * 19 17 15 23 23 C 1.53006 * 117.49693 * 80.55213 * 14 13 12 24 24 C 1.52997 * 117.49830 * 149.21413 * 14 13 12 25 25 H 1.09000 * 109.46849 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46695 * 299.99947 * 1 2 3 27 27 H 1.09002 * 109.46727 * 59.99427 * 1 2 3 28 28 H 1.08007 * 120.02160 * 0.02562 * 4 3 2 29 29 H 1.07994 * 119.97089 * 179.69622 * 5 4 3 30 30 H 1.08005 * 119.94483 * 180.02562 * 6 5 4 31 31 H 1.07993 * 119.97264 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.46633 * 145.00332 * 9 8 7 33 33 H 1.08995 * 109.47240 * 25.00173 * 9 8 7 34 34 H 1.09000 * 109.47008 * 60.00041 * 13 12 10 35 35 H 1.08998 * 109.46903 * 299.99954 * 13 12 10 36 36 H 0.96995 * 120.00267 * 180.02562 * 18 17 15 37 37 H 1.08998 * 117.49874 * 215.00127 * 23 14 13 38 38 H 1.08995 * 117.49819 * 0.02968 * 23 14 13 39 39 H 1.08998 * 117.50062 * 359.97438 * 24 14 13 40 40 H 1.09000 * 117.49878 * 144.97626 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3753 0.0054 5 6 1.9210 3.6048 -0.0012 6 6 3.3020 3.6757 -0.0065 7 6 4.0561 2.5170 -0.0057 8 6 3.4312 1.2847 -0.0002 9 6 4.2538 0.0221 0.0000 10 6 4.4190 -0.4701 -1.4147 11 8 3.9203 0.1420 -2.3294 12 8 5.1201 -1.5884 -1.6587 13 6 5.2386 -2.0029 -3.0453 14 6 6.0664 -3.2871 -3.1248 15 6 7.5072 -3.1588 -2.7020 16 1 7.7970 -3.4027 -1.6906 17 6 8.4564 -2.7357 -3.6081 18 7 8.0887 -2.3243 -4.8019 19 14 10.2648 -2.7468 -3.1401 20 1 10.4135 -3.2501 -1.7509 21 1 11.0114 -3.6315 -4.0702 22 1 10.8070 -1.3671 -3.2269 23 6 5.3549 -4.6064 -2.8178 24 6 5.7469 -4.2646 -4.2576 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2129 2.3203 0.0101 29 1 1.3341 4.5113 -0.0019 30 1 3.7924 4.6380 -0.0112 31 1 5.1345 2.5751 -0.0095 32 1 3.7489 -0.7403 0.5933 33 1 5.2341 0.2272 0.4302 34 1 5.7312 -1.2174 -3.6185 35 1 4.2455 -2.1843 -3.4563 36 1 8.7565 -2.0270 -5.4395 37 1 5.9289 -5.3816 -2.3102 38 1 4.2970 -4.5594 -2.5598 39 1 4.9466 -3.9930 -4.9460 40 1 6.5788 -4.8147 -4.6974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174756962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:25 Heat of formation + Delta-G solvation = -75.842478 kcal Electronic energy + Delta-G solvation = -22772.924924 eV Core-core repulsion = 19326.073003 eV Total energy + Delta-G solvation = -3446.851921 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.46661 -39.38347 -37.46386 -36.68828 -35.11469 -32.95179 -31.93401 -30.18763 -28.44476 -27.30872 -26.36000 -25.14104 -22.24398 -22.10859 -21.14293 -20.05369 -19.21055 -18.04546 -16.95163 -16.51865 -16.33646 -15.80590 -15.72084 -15.40638 -15.01668 -14.56965 -14.49565 -13.91910 -13.70490 -13.20268 -13.10147 -12.63691 -12.46756 -12.11949 -11.92594 -11.76572 -11.55542 -11.31445 -11.19759 -10.98582 -10.91307 -10.80963 -10.49522 -10.25555 -9.92078 -9.75687 -9.51100 -8.91565 -8.78034 -8.44899 -8.21779 -8.14405 -6.04506 -4.09469 1.23933 1.41634 2.92643 3.20931 3.29042 3.37488 3.39652 3.42078 3.89302 4.41316 4.61615 4.73485 4.89502 4.98487 5.03082 5.19420 5.24872 5.26868 5.29050 5.35933 5.51132 5.57282 5.64158 5.74182 5.98969 6.04737 6.24362 6.30122 6.36667 6.38419 6.48540 6.58870 6.70201 6.73591 6.77890 7.05789 7.32084 7.35464 7.40431 7.53080 7.89006 8.40706 8.58104 8.92494 9.56178 11.05050 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.003979 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.358452 B = 7035.885978 C = 7891.595971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.144 3.856 4 C -0.211 4.211 5 C -0.082 4.082 6 C -0.158 4.158 7 C -0.067 4.067 8 C -0.100 4.100 9 C -0.068 4.068 10 C 0.458 3.542 11 O -0.518 6.518 12 O -0.339 6.339 13 C 0.117 3.883 14 C 0.038 3.962 15 C -0.488 4.488 16 H 0.064 0.936 17 C 0.068 3.932 18 N -0.882 5.882 19 Si 0.892 3.108 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.284 1.284 23 C -0.205 4.205 24 C -0.146 4.146 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.260 0.740 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.160 8.478 10.853 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.099 3.901 4 C -0.229 4.229 5 C -0.100 4.100 6 C -0.176 4.176 7 C -0.085 4.085 8 C -0.101 4.101 9 C -0.106 4.106 10 C 0.300 3.700 11 O -0.407 6.407 12 O -0.254 6.254 13 C 0.044 3.956 14 C 0.037 3.963 15 C -0.526 4.526 16 H 0.082 0.918 17 C -0.135 4.135 18 N -0.519 5.519 19 Si 0.719 3.281 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.242 4.242 24 C -0.184 4.184 25 H 0.118 0.882 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.133 8.487 10.365 18.760 hybrid contribution 0.633 0.271 -0.185 0.713 sum -12.500 8.758 10.180 18.346 Atomic orbital electron populations 1.23049 0.78490 1.03982 1.01130 1.86096 1.21284 1.26806 1.88347 1.18790 0.91645 0.84325 0.95365 1.21154 0.99820 0.92337 1.09634 1.20898 0.94708 0.96800 0.97578 1.20996 0.93883 0.98269 1.04449 1.20925 1.00133 0.90948 0.96448 1.18719 0.90286 0.94751 1.06299 1.20086 1.01931 0.95707 0.92830 1.23334 0.75574 0.79389 0.91672 1.90611 1.46352 1.56939 1.46833 1.86505 1.65501 1.39689 1.33738 1.22846 0.97211 0.98797 0.76737 1.18791 0.94049 0.84519 0.98929 1.20433 0.89417 1.45413 0.97293 0.91793 1.25020 0.98942 0.94551 0.94983 1.70013 1.33619 1.42264 1.05956 0.86536 0.85129 0.77667 0.78721 1.19559 1.20948 1.21040 1.23000 0.98499 1.02709 1.00008 1.22541 1.01168 1.04672 0.90018 0.88223 0.92773 0.92667 0.85577 0.85966 0.85843 0.85143 0.86945 0.87016 0.90707 0.94516 0.92995 0.90078 0.91552 0.91699 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.33 9.64 -19.41 -0.19 -4.51 16 3 C 0.14 2.04 6.66 -39.22 -0.26 1.78 16 4 C -0.21 -2.48 9.04 -39.43 -0.36 -2.84 16 5 C -0.08 -0.89 10.04 -39.61 -0.40 -1.28 16 6 C -0.16 -1.80 10.04 -39.56 -0.40 -2.19 16 7 C -0.07 -0.87 9.68 -39.60 -0.38 -1.25 16 8 C -0.10 -1.47 4.39 -104.47 -0.46 -1.93 16 9 C -0.07 -1.03 5.66 -29.04 -0.16 -1.20 16 10 C 0.46 9.29 7.95 36.00 0.29 9.58 16 11 O -0.52 -11.85 15.78 -18.75 -0.30 -12.14 16 12 O -0.34 -7.73 10.16 -39.24 -0.40 -8.13 16 13 C 0.12 2.90 5.29 37.16 0.20 3.09 16 14 C 0.04 0.96 1.61 -155.66 -0.25 0.71 16 15 C -0.49 -13.46 8.77 -34.44 -0.30 -13.76 16 16 H 0.06 1.77 7.82 -52.49 -0.41 1.36 16 17 C 0.07 1.87 5.39 -17.82 -0.10 1.78 16 18 N -0.88 -25.18 12.93 55.43 0.72 -24.46 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 C -0.20 -4.56 9.96 -26.69 -0.27 -4.83 16 24 C -0.15 -3.47 9.43 -26.69 -0.25 -3.72 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 27 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 28 H 0.13 1.16 6.30 -52.48 -0.33 0.83 16 29 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 30 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.11 1.55 7.70 -51.93 -0.40 1.15 16 33 H 0.11 1.44 8.05 -51.93 -0.42 1.02 16 34 H 0.07 2.04 8.13 -51.93 -0.42 1.61 16 35 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -32.56 347.69 -7.77 -40.33 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.71 Total: 2.35 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.11 Total: -14.82 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.72 Total: -24.46 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.88 Total: -24.79 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.56 -7.77 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174756962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.508 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds