Wall clock time and date at job start Tue Mar 31 2020 06:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35896 * 117.00064 * 2 1 4 4 C 1.38755 * 120.05978 * 0.25876 * 3 2 1 5 5 C 1.38122 * 119.94793 * 180.31544 * 4 3 2 6 6 C 1.38284 * 120.05140 * 359.67949 * 5 4 3 7 7 C 1.38247 * 120.11566 * 0.02562 * 6 5 4 8 8 C 1.38167 * 120.05226 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.02294 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47092 * 264.99923 * 9 8 7 11 11 O 1.20829 * 120.00077 * 0.02562 * 10 9 8 12 12 O 1.34224 * 119.99958 * 180.02562 * 10 9 8 13 13 C 1.45207 * 117.00145 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47305 * 179.97438 * 13 12 10 15 15 C 1.50701 * 115.54913 * 294.89081 * 14 13 12 16 16 H 1.07995 * 120.00397 * 95.16717 * 15 14 13 17 17 C 1.37878 * 119.99626 * 274.88524 * 15 14 13 18 18 N 1.31520 * 120.00038 * 6.39360 * 17 15 14 19 19 Si 1.86796 * 120.00205 * 186.39563 * 17 15 14 20 20 H 1.48504 * 109.47020 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47190 * 119.99838 * 19 17 15 22 22 H 1.48496 * 109.47249 * 239.99932 * 19 17 15 23 23 C 1.53006 * 117.49693 * 80.55213 * 14 13 12 24 24 C 1.52997 * 117.49830 * 149.21413 * 14 13 12 25 25 H 1.09000 * 109.46849 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46695 * 299.99947 * 1 2 3 27 27 H 1.09002 * 109.46727 * 59.99427 * 1 2 3 28 28 H 1.08007 * 120.02160 * 0.02562 * 4 3 2 29 29 H 1.07994 * 119.97089 * 179.69622 * 5 4 3 30 30 H 1.08005 * 119.94483 * 180.02562 * 6 5 4 31 31 H 1.07993 * 119.97264 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.46633 * 145.00332 * 9 8 7 33 33 H 1.08995 * 109.47240 * 25.00173 * 9 8 7 34 34 H 1.09000 * 109.47008 * 60.00041 * 13 12 10 35 35 H 1.08998 * 109.46903 * 299.99954 * 13 12 10 36 36 H 0.96995 * 120.00267 * 180.02562 * 18 17 15 37 37 H 1.08998 * 117.49874 * 215.00127 * 23 14 13 38 38 H 1.08995 * 117.49819 * 0.02968 * 23 14 13 39 39 H 1.08998 * 117.50062 * 359.97438 * 24 14 13 40 40 H 1.09000 * 117.49878 * 144.97626 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3753 0.0054 5 6 1.9210 3.6048 -0.0012 6 6 3.3020 3.6757 -0.0065 7 6 4.0561 2.5170 -0.0057 8 6 3.4312 1.2847 -0.0002 9 6 4.2538 0.0221 0.0000 10 6 4.4190 -0.4701 -1.4147 11 8 3.9203 0.1420 -2.3294 12 8 5.1201 -1.5884 -1.6587 13 6 5.2386 -2.0029 -3.0453 14 6 6.0664 -3.2871 -3.1248 15 6 7.5072 -3.1588 -2.7020 16 1 7.7970 -3.4027 -1.6906 17 6 8.4564 -2.7357 -3.6081 18 7 8.0887 -2.3243 -4.8019 19 14 10.2648 -2.7468 -3.1401 20 1 10.4135 -3.2501 -1.7509 21 1 11.0114 -3.6315 -4.0702 22 1 10.8070 -1.3671 -3.2269 23 6 5.3549 -4.6064 -2.8178 24 6 5.7469 -4.2646 -4.2576 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2129 2.3203 0.0101 29 1 1.3341 4.5113 -0.0019 30 1 3.7924 4.6380 -0.0112 31 1 5.1345 2.5751 -0.0095 32 1 3.7489 -0.7403 0.5933 33 1 5.2341 0.2272 0.4302 34 1 5.7312 -1.2174 -3.6185 35 1 4.2455 -2.1843 -3.4563 36 1 8.7565 -2.0270 -5.4395 37 1 5.9289 -5.3816 -2.3102 38 1 4.2970 -4.5594 -2.5598 39 1 4.9466 -3.9930 -4.9460 40 1 6.5788 -4.8147 -4.6974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174756962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:25 Heat of formation + Delta-G solvation = -93.201884 kcal Electronic energy + Delta-G solvation = -22773.677685 eV Core-core repulsion = 19326.073003 eV Total energy + Delta-G solvation = -3447.604681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.65507 -40.81066 -38.65571 -38.26251 -36.89587 -34.06315 -34.00614 -31.07956 -29.70213 -28.38060 -27.88069 -27.13078 -23.37706 -23.07128 -22.93293 -21.48543 -21.18867 -18.96659 -18.61774 -18.28611 -17.59492 -17.14244 -16.96960 -16.61994 -16.49627 -16.33076 -15.60075 -15.35466 -14.97364 -14.69360 -14.16654 -14.08153 -13.87001 -13.54096 -13.34452 -13.09570 -12.92464 -12.87361 -12.80907 -12.37057 -12.28878 -12.10168 -12.01070 -11.78525 -11.67961 -11.64432 -11.35485 -10.77739 -10.50338 -10.10382 -9.84748 -9.12301 -8.13812 -6.25279 0.28832 0.49604 1.31540 1.41166 1.43522 1.55348 1.91553 2.38061 2.42924 2.85434 3.15224 3.44332 3.60549 3.84748 3.97042 4.09388 4.14030 4.24621 4.31871 4.37780 4.38328 4.44328 4.47265 4.51351 4.60738 4.65827 4.70587 4.79750 4.84588 4.95292 5.05332 5.16693 5.35452 5.45335 5.46632 5.56915 5.57894 5.73352 5.75600 5.87154 6.35697 6.44229 6.80367 6.89400 7.43625 8.95547 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.003979 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.358452 B = 7035.885978 C = 7891.595971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.125 3.875 4 C -0.216 4.216 5 C -0.079 4.079 6 C -0.163 4.163 7 C -0.081 4.081 8 C -0.131 4.131 9 C -0.057 4.057 10 C 0.454 3.546 11 O -0.547 6.547 12 O -0.349 6.349 13 C 0.130 3.870 14 C 0.003 3.997 15 C -0.503 4.503 16 H 0.057 0.943 17 C 0.022 3.978 18 N -0.911 5.911 19 Si 0.955 3.045 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.283 1.283 23 C -0.177 4.177 24 C -0.147 4.147 25 H 0.113 0.887 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.138 0.862 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.261 0.739 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.935 9.220 12.279 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.079 3.921 4 C -0.234 4.234 5 C -0.097 4.097 6 C -0.181 4.181 7 C -0.099 4.099 8 C -0.132 4.132 9 C -0.094 4.094 10 C 0.299 3.701 11 O -0.438 6.438 12 O -0.264 6.264 13 C 0.057 3.943 14 C 0.003 3.997 15 C -0.541 4.541 16 H 0.075 0.925 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.780 3.220 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.209 1.209 23 C -0.214 4.214 24 C -0.185 4.185 25 H 0.131 0.869 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.168 0.832 29 H 0.173 0.827 30 H 0.166 0.834 31 H 0.156 0.844 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.921 9.224 11.811 20.454 hybrid contribution 0.767 0.105 -0.608 0.984 sum -13.154 9.328 11.203 19.636 Atomic orbital electron populations 1.23324 0.76476 1.05372 1.02271 1.86046 1.23539 1.27193 1.88489 1.19068 0.91855 0.85218 0.95932 1.21503 1.01084 0.91953 1.08891 1.21353 0.94858 0.97734 0.95758 1.21361 0.94411 0.98751 1.03566 1.21183 1.00906 0.91189 0.96610 1.18856 0.90896 0.94805 1.08619 1.20175 1.03532 0.96532 0.89172 1.24413 0.74064 0.78089 0.93553 1.90582 1.47439 1.57500 1.48315 1.86519 1.66392 1.41117 1.32411 1.22456 0.96819 0.97468 0.77591 1.18900 0.93860 0.85916 1.01026 1.20669 0.90907 1.45426 0.97075 0.92518 1.25751 1.02971 0.94159 0.94927 1.70124 1.34827 1.43086 1.06872 0.85557 0.80119 0.77609 0.78725 1.18797 1.20376 1.20910 1.23010 0.99504 1.00467 0.98413 1.22479 1.01046 1.04140 0.90810 0.86864 0.90637 0.92411 0.83223 0.82718 0.83377 0.84392 0.85658 0.84898 0.94372 0.93952 0.93014 0.89375 0.89281 0.90619 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.34 -9.16 9.64 -92.38 -0.89 -10.05 16 3 C 0.12 3.42 6.66 22.51 0.15 3.57 16 4 C -0.22 -4.65 9.04 22.37 0.20 -4.45 16 5 C -0.08 -1.51 10.04 22.25 0.22 -1.28 16 6 C -0.16 -3.37 10.04 22.28 0.22 -3.15 16 7 C -0.08 -2.04 9.68 22.26 0.22 -1.83 16 8 C -0.13 -3.79 4.39 -19.77 -0.09 -3.88 16 9 C -0.06 -1.72 5.66 29.10 0.16 -1.55 16 10 C 0.45 18.70 7.95 71.24 0.57 19.26 16 11 O -0.55 -25.66 15.78 21.95 0.35 -25.32 16 12 O -0.35 -16.14 10.16 -51.36 -0.52 -16.66 16 13 C 0.13 6.59 5.29 71.98 0.38 6.97 16 14 C 0.00 0.18 1.61 -52.93 -0.08 0.09 16 15 C -0.50 -28.02 8.77 25.60 0.22 -27.80 16 16 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 17 C 0.02 1.22 5.39 84.65 0.46 1.68 16 18 N -0.91 -52.99 12.93 21.45 0.28 -52.71 16 19 Si 0.95 43.66 29.54 68.60 2.03 45.68 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 C -0.18 -7.67 9.96 30.62 0.30 -7.36 16 24 C -0.15 -6.97 9.43 30.62 0.29 -6.69 16 25 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 0.92 7.65 -2.39 -0.02 0.90 16 27 H 0.06 0.92 7.67 -2.39 -0.02 0.91 16 28 H 0.15 2.36 6.30 -2.91 -0.02 2.34 16 29 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 32 H 0.13 3.40 7.70 -2.39 -0.02 3.38 16 33 H 0.13 3.34 8.05 -2.39 -0.02 3.32 16 34 H 0.04 2.17 8.13 -2.39 -0.02 2.15 16 35 H 0.04 2.03 8.08 -2.39 -0.02 2.02 16 36 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 38 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 40 H 0.07 3.58 8.14 -2.39 -0.02 3.56 16 Total: -1.00 -70.97 347.69 6.61 -64.36 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.03 Total: 19.66 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 4.34 Total: -24.97 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.28 Total: -52.71 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -1.07 Total: -52.04 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -70.97 6.61 -64.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174756962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.837 kcal (2) G-P(sol) polarization free energy of solvation -70.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds