Wall clock time and date at job start Tue Mar 31 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47293 * 2 1 4 4 C 1.35642 * 117.00255 * 179.97438 * 3 2 1 5 5 C 1.38702 * 120.15324 * 0.02562 * 4 3 2 6 6 C 1.38054 * 120.09283 * 179.97438 * 5 4 3 7 7 C 1.38563 * 120.39854 * 0.02562 * 6 5 4 8 8 C 1.37765 * 120.31276 * 359.97438 * 7 6 5 9 9 C 1.39774 * 119.90110 * 0.02562 * 8 7 6 10 10 C 1.47393 * 120.19898 * 179.97438 * 9 8 7 11 11 O 1.21511 * 120.00071 * 175.70524 * 10 9 8 12 12 O 1.34753 * 120.00020 * 355.69749 * 10 9 8 13 13 C 1.45197 * 116.99975 * 184.62391 * 12 10 9 14 14 C 1.52998 * 109.47154 * 184.05504 * 13 12 10 15 15 C 1.50697 * 115.55077 * 306.59630 * 14 13 12 16 16 H 1.07995 * 120.00452 * 144.82661 * 15 14 13 17 17 C 1.37885 * 119.99797 * 324.82667 * 15 14 13 18 18 N 1.31511 * 119.99966 * 348.42996 * 17 15 14 19 19 Si 1.86801 * 120.00103 * 168.43109 * 17 15 14 20 20 H 1.48500 * 109.47022 * 90.00012 * 19 17 15 21 21 H 1.48497 * 109.47171 * 210.00035 * 19 17 15 22 22 H 1.48504 * 109.47138 * 330.00333 * 19 17 15 23 23 C 1.53001 * 117.49940 * 160.92560 * 14 13 12 24 24 C 1.53002 * 117.49806 * 92.26359 * 14 13 12 25 25 H 1.09003 * 109.47046 * 60.00622 * 1 2 3 26 26 H 1.09001 * 109.46861 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46996 * 300.00222 * 1 2 3 28 28 H 1.09004 * 109.47216 * 239.99311 * 2 1 3 29 29 H 1.09007 * 109.46871 * 119.99868 * 2 1 3 30 30 H 1.08001 * 119.95836 * 359.95533 * 5 4 3 31 31 H 1.07997 * 119.80259 * 179.72406 * 6 5 4 32 32 H 1.08000 * 119.84583 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.05375 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.47295 * 304.05139 * 13 12 10 35 35 H 1.08997 * 109.47402 * 64.05622 * 13 12 10 36 36 H 0.96996 * 120.00392 * 185.03222 * 18 17 15 37 37 H 1.08999 * 117.49983 * 0.02562 * 23 14 13 38 38 H 1.09004 * 117.49935 * 145.01969 * 23 14 13 39 39 H 1.09003 * 117.49456 * 214.97684 * 24 14 13 40 40 H 1.08998 * 117.50214 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.1990 0.4273 0.0005 6 6 5.5674 0.6096 0.0005 7 6 6.1045 1.8869 0.0011 8 6 5.2778 2.9889 0.0011 9 6 3.8904 2.8191 0.0011 10 6 2.9997 3.9935 0.0017 11 8 1.7965 3.8435 -0.0771 12 8 3.5198 5.2335 0.0898 13 6 2.5809 6.3366 0.1888 14 6 3.3469 7.6609 0.1775 15 6 4.4467 7.7844 1.2004 16 1 5.3495 8.3260 0.9600 17 6 4.3001 7.2059 2.4434 18 7 3.1270 6.7467 2.8208 19 14 5.7679 7.0745 3.5914 20 1 5.8426 8.2904 4.4406 21 1 5.6151 5.8761 4.4550 22 1 7.0129 6.9525 2.7911 23 6 2.5635 8.9273 -0.1738 24 6 3.5614 8.3414 -1.1760 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5140 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.7881 -0.5716 0.0008 31 1 6.2232 -0.2484 0.0050 32 1 7.1764 2.0192 0.0015 33 1 5.7009 3.9825 0.0012 34 1 1.8946 6.3066 -0.6575 35 1 2.0166 6.2512 1.1175 36 1 3.0061 6.4065 3.7211 37 1 1.5022 8.8170 -0.3965 38 1 2.8437 9.8498 0.3346 39 1 4.4978 8.8788 -1.3263 40 1 3.1571 7.8455 -2.0584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174757123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:05 Heat of formation + Delta-G solvation = -70.135154 kcal Electronic energy + Delta-G solvation = -23285.648493 eV Core-core repulsion = 19839.044061 eV Total energy + Delta-G solvation = -3446.604433 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33867 -38.89887 -37.35479 -36.56798 -34.81363 -32.11931 -32.01290 -31.15557 -29.49832 -26.59097 -25.33922 -24.14199 -23.41297 -21.54091 -21.20665 -20.24360 -19.11848 -18.17544 -16.91949 -16.59114 -16.14426 -15.84885 -15.25067 -15.13597 -14.70415 -14.52234 -14.20129 -13.66226 -13.35436 -13.32133 -12.96778 -12.64039 -12.14347 -12.08721 -11.78866 -11.77223 -11.59371 -11.32281 -10.99249 -10.93858 -10.78552 -10.77161 -10.46563 -10.28972 -9.78509 -9.37224 -9.31458 -9.06150 -8.95812 -8.71387 -8.17201 -8.06783 -6.00939 -4.04573 0.99658 1.48391 3.18402 3.19923 3.29050 3.37324 3.40710 3.61626 4.08102 4.39512 4.72126 4.84838 4.88140 4.98013 5.03337 5.13001 5.18527 5.32395 5.47563 5.48372 5.60067 5.74904 5.80196 5.97073 6.03060 6.09307 6.23668 6.29987 6.35137 6.50858 6.55279 6.68666 6.70676 6.81339 6.87377 7.03192 7.29596 7.45051 7.47493 7.65055 7.93506 8.38709 8.78836 8.91870 9.54948 11.00982 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.005368 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.424909 B = 5215.230703 C = 5954.627677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.280 6.280 4 C 0.185 3.815 5 C -0.230 4.230 6 C -0.054 4.054 7 C -0.176 4.176 8 C -0.021 4.021 9 C -0.149 4.149 10 C 0.499 3.501 11 O -0.508 6.508 12 O -0.323 6.323 13 C 0.119 3.881 14 C 0.049 3.951 15 C -0.483 4.483 16 H 0.062 0.938 17 C 0.077 3.923 18 N -0.881 5.881 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.271 1.271 23 C -0.193 4.193 24 C -0.210 4.210 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.150 0.850 34 H 0.027 0.973 35 H 0.110 0.890 36 H 0.262 0.738 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 -14.442 -5.208 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.191 6.191 4 C 0.137 3.863 5 C -0.249 4.249 6 C -0.072 4.072 7 C -0.194 4.194 8 C -0.039 4.039 9 C -0.151 4.151 10 C 0.343 3.657 11 O -0.399 6.399 12 O -0.238 6.238 13 C 0.046 3.954 14 C 0.048 3.952 15 C -0.520 4.520 16 H 0.080 0.920 17 C -0.127 4.127 18 N -0.518 5.518 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.195 1.195 23 C -0.231 4.231 24 C -0.247 4.247 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.168 0.832 34 H 0.045 0.955 35 H 0.128 0.872 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.819 -14.447 -5.095 15.341 hybrid contribution 0.665 -0.240 0.667 0.972 sum 1.485 -14.687 -4.428 15.412 Atomic orbital electron populations 1.21737 0.92604 1.02291 1.04107 1.22855 0.96363 0.82415 1.01003 1.86393 1.17874 1.28229 1.86623 1.19015 0.83075 0.92500 0.91698 1.21118 0.94335 0.97596 1.11819 1.21098 0.94164 0.97468 0.94503 1.21048 1.00268 0.92086 1.05998 1.21546 0.91003 1.00625 0.90706 1.18762 0.93508 0.89287 1.13495 1.20704 0.86768 0.84225 0.74027 1.90788 1.15918 1.87109 1.46075 1.86522 1.41468 1.14046 1.81752 1.22757 0.89194 0.82084 1.01406 1.18890 0.96725 0.87287 0.92269 1.20389 1.00964 1.33832 0.96860 0.92004 1.24919 0.95653 0.94160 0.97926 1.69798 1.22010 1.41609 1.18362 0.86581 0.83269 0.77629 0.80545 1.20746 1.21065 1.19546 1.22963 0.95035 1.00466 1.04660 1.22962 1.00278 1.07273 0.94177 0.91344 0.90681 0.91262 0.92168 0.92143 0.85058 0.85566 0.85227 0.83197 0.95513 0.87186 0.92732 0.91510 0.89823 0.90346 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16 2 C 0.05 0.57 5.46 37.16 0.20 0.77 16 3 O -0.28 -4.83 8.22 -40.47 -0.33 -5.16 16 4 C 0.18 3.12 6.70 -38.67 -0.26 2.86 16 5 C -0.23 -2.96 9.03 -39.48 -0.36 -3.31 16 6 C -0.05 -0.63 10.03 -39.53 -0.40 -1.02 16 7 C -0.18 -2.29 10.02 -39.63 -0.40 -2.69 16 8 C -0.02 -0.34 9.61 -39.18 -0.38 -0.72 16 9 C -0.15 -2.87 5.89 -104.86 -0.62 -3.48 16 10 C 0.50 11.61 7.88 34.46 0.27 11.88 16 11 O -0.51 -12.75 14.89 -26.58 -0.40 -13.15 16 12 O -0.32 -8.03 9.11 -40.64 -0.37 -8.40 16 13 C 0.12 3.04 4.61 37.16 0.17 3.21 16 14 C 0.05 1.24 2.12 -155.66 -0.33 0.91 16 15 C -0.48 -13.17 8.76 -34.44 -0.30 -13.47 16 16 H 0.06 1.67 7.84 -52.49 -0.41 1.26 16 17 C 0.08 2.09 5.16 -17.82 -0.09 1.99 16 18 N -0.88 -24.89 10.81 55.43 0.60 -24.29 16 19 Si 0.89 21.05 29.56 -169.99 -5.02 16.03 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 23 C -0.19 -4.41 9.96 -26.69 -0.27 -4.68 16 24 C -0.21 -4.64 9.92 -26.69 -0.26 -4.90 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 29 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.15 2.56 7.62 -52.49 -0.40 2.16 16 34 H 0.03 0.65 7.94 -51.93 -0.41 0.24 16 35 H 0.11 3.11 6.07 -51.93 -0.32 2.79 16 36 H 0.26 7.15 8.32 -40.82 -0.34 6.81 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.08 1.89 8.14 -51.93 -0.42 1.46 16 39 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -31.73 341.86 -8.61 -40.34 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.61 Total: 3.31 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -2.63 Total: -13.83 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.60 Total: -24.29 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -1.10 Total: -26.71 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.73 -8.61 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174757123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.798 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds