Wall clock time and date at job start Tue Mar 31 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47293 * 2 1 4 4 C 1.35642 * 117.00255 * 179.97438 * 3 2 1 5 5 C 1.38702 * 120.15324 * 0.02562 * 4 3 2 6 6 C 1.38054 * 120.09283 * 179.97438 * 5 4 3 7 7 C 1.38563 * 120.39854 * 0.02562 * 6 5 4 8 8 C 1.37765 * 120.31276 * 359.97438 * 7 6 5 9 9 C 1.39774 * 119.90110 * 0.02562 * 8 7 6 10 10 C 1.47393 * 120.19898 * 179.97438 * 9 8 7 11 11 O 1.21511 * 120.00071 * 175.70524 * 10 9 8 12 12 O 1.34753 * 120.00020 * 355.69749 * 10 9 8 13 13 C 1.45197 * 116.99975 * 184.62391 * 12 10 9 14 14 C 1.52998 * 109.47154 * 184.05504 * 13 12 10 15 15 C 1.50697 * 115.55077 * 306.59630 * 14 13 12 16 16 H 1.07995 * 120.00452 * 144.82661 * 15 14 13 17 17 C 1.37885 * 119.99797 * 324.82667 * 15 14 13 18 18 N 1.31511 * 119.99966 * 348.42996 * 17 15 14 19 19 Si 1.86801 * 120.00103 * 168.43109 * 17 15 14 20 20 H 1.48500 * 109.47022 * 90.00012 * 19 17 15 21 21 H 1.48497 * 109.47171 * 210.00035 * 19 17 15 22 22 H 1.48504 * 109.47138 * 330.00333 * 19 17 15 23 23 C 1.53001 * 117.49940 * 160.92560 * 14 13 12 24 24 C 1.53002 * 117.49806 * 92.26359 * 14 13 12 25 25 H 1.09003 * 109.47046 * 60.00622 * 1 2 3 26 26 H 1.09001 * 109.46861 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46996 * 300.00222 * 1 2 3 28 28 H 1.09004 * 109.47216 * 239.99311 * 2 1 3 29 29 H 1.09007 * 109.46871 * 119.99868 * 2 1 3 30 30 H 1.08001 * 119.95836 * 359.95533 * 5 4 3 31 31 H 1.07997 * 119.80259 * 179.72406 * 6 5 4 32 32 H 1.08000 * 119.84583 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.05375 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.47295 * 304.05139 * 13 12 10 35 35 H 1.08997 * 109.47402 * 64.05622 * 13 12 10 36 36 H 0.96996 * 120.00392 * 185.03222 * 18 17 15 37 37 H 1.08999 * 117.49983 * 0.02562 * 23 14 13 38 38 H 1.09004 * 117.49935 * 145.01969 * 23 14 13 39 39 H 1.09003 * 117.49456 * 214.97684 * 24 14 13 40 40 H 1.08998 * 117.50214 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3511 1.5250 0.0005 5 6 4.1990 0.4273 0.0005 6 6 5.5674 0.6096 0.0005 7 6 6.1045 1.8869 0.0011 8 6 5.2778 2.9889 0.0011 9 6 3.8904 2.8191 0.0011 10 6 2.9997 3.9935 0.0017 11 8 1.7965 3.8435 -0.0771 12 8 3.5198 5.2335 0.0898 13 6 2.5809 6.3366 0.1888 14 6 3.3469 7.6609 0.1775 15 6 4.4467 7.7844 1.2004 16 1 5.3495 8.3260 0.9600 17 6 4.3001 7.2059 2.4434 18 7 3.1270 6.7467 2.8208 19 14 5.7679 7.0745 3.5914 20 1 5.8426 8.2904 4.4406 21 1 5.6151 5.8761 4.4550 22 1 7.0129 6.9525 2.7911 23 6 2.5635 8.9273 -0.1738 24 6 3.5614 8.3414 -1.1760 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5140 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.7881 -0.5716 0.0008 31 1 6.2232 -0.2484 0.0050 32 1 7.1764 2.0192 0.0015 33 1 5.7009 3.9825 0.0012 34 1 1.8946 6.3066 -0.6575 35 1 2.0166 6.2512 1.1175 36 1 3.0061 6.4065 3.7211 37 1 1.5022 8.8170 -0.3965 38 1 2.8437 9.8498 0.3346 39 1 4.4978 8.8788 -1.3263 40 1 3.1571 7.8455 -2.0584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174757123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:05 Heat of formation + Delta-G solvation = -86.670800 kcal Electronic energy + Delta-G solvation = -23286.365533 eV Core-core repulsion = 19839.044061 eV Total energy + Delta-G solvation = -3447.321472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.66575 -40.52275 -38.59474 -38.34007 -36.69012 -34.18461 -33.00416 -32.29255 -30.60261 -28.48002 -27.39893 -25.22667 -24.70766 -23.02292 -22.58229 -21.74841 -21.11107 -19.39853 -18.54585 -18.38428 -17.40040 -17.29333 -16.96584 -16.56984 -16.43737 -15.87732 -15.59122 -15.25197 -14.84411 -14.42391 -14.39545 -13.83228 -13.76973 -13.46128 -13.41405 -12.96381 -12.90317 -12.84954 -12.75319 -12.55096 -12.31892 -12.14275 -12.04391 -11.68998 -11.62266 -11.35737 -11.13137 -11.08342 -10.66388 -10.12880 -10.05884 -9.30063 -8.07036 -6.17183 -0.24482 0.38115 1.40560 1.43901 1.54072 1.64845 1.97349 2.18326 2.42335 2.78698 3.02972 3.55754 3.73084 3.84011 3.95453 4.02711 4.16615 4.19956 4.22370 4.32468 4.33409 4.40857 4.47583 4.57602 4.75012 4.80496 4.88655 4.89299 4.90120 4.98601 5.11850 5.17461 5.24218 5.30975 5.38184 5.43914 5.50171 5.76442 5.79128 5.81459 6.33207 6.40756 6.78768 7.01162 7.44759 8.93506 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.005368 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.424909 B = 5215.230703 C = 5954.627677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.038 3.962 3 O -0.320 6.320 4 C 0.171 3.829 5 C -0.220 4.220 6 C -0.031 4.031 7 C -0.169 4.169 8 C -0.037 4.037 9 C -0.195 4.195 10 C 0.489 3.511 11 O -0.542 6.542 12 O -0.334 6.334 13 C 0.129 3.871 14 C 0.008 3.992 15 C -0.497 4.497 16 H 0.060 0.940 17 C 0.031 3.969 18 N -0.909 5.909 19 Si 0.951 3.049 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.260 1.260 23 C -0.186 4.186 24 C -0.186 4.186 25 H 0.053 0.947 26 H 0.112 0.888 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.169 0.831 31 H 0.178 0.822 32 H 0.162 0.838 33 H 0.132 0.868 34 H 0.027 0.973 35 H 0.077 0.923 36 H 0.259 0.741 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 -17.124 -5.660 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.036 4.036 3 O -0.232 6.232 4 C 0.124 3.876 5 C -0.238 4.238 6 C -0.049 4.049 7 C -0.187 4.187 8 C -0.055 4.055 9 C -0.197 4.197 10 C 0.337 3.663 11 O -0.435 6.435 12 O -0.250 6.250 13 C 0.055 3.945 14 C 0.008 3.992 15 C -0.534 4.534 16 H 0.078 0.922 17 C -0.169 4.169 18 N -0.547 5.547 19 Si 0.776 3.224 20 H -0.200 1.200 21 H -0.214 1.214 22 H -0.184 1.184 23 C -0.224 4.224 24 C -0.223 4.223 25 H 0.072 0.928 26 H 0.131 0.869 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.187 0.813 31 H 0.196 0.804 32 H 0.180 0.820 33 H 0.150 0.850 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.115 -17.121 -5.562 18.270 hybrid contribution -0.058 0.480 0.756 0.897 sum 3.057 -16.641 -4.806 17.589 Atomic orbital electron populations 1.21798 0.92274 1.04154 1.02432 1.23249 0.96772 0.80497 1.03104 1.86352 1.18508 1.31680 1.86694 1.19285 0.83683 0.92647 0.92005 1.21566 0.94549 0.97804 1.09928 1.21709 0.94193 0.98324 0.90653 1.21432 1.01412 0.91558 1.04258 1.21518 0.90402 1.01424 0.92149 1.18800 0.94092 0.88656 1.18131 1.21619 0.87319 0.84631 0.72778 1.90736 1.17401 1.87378 1.47999 1.86528 1.41486 1.14786 1.82173 1.22458 0.89363 0.83062 0.99590 1.19032 0.97813 0.87949 0.94399 1.20632 1.01347 1.33938 0.97529 0.92215 1.25636 0.97888 0.93920 0.99457 1.69966 1.23800 1.42587 1.18393 0.85655 0.80527 0.77513 0.78690 1.19957 1.21353 1.18447 1.22969 0.95846 0.99103 1.04440 1.22975 1.00468 1.05597 0.93224 0.92771 0.86946 0.93204 0.89615 0.90129 0.81334 0.80439 0.81998 0.85003 0.95499 0.90493 0.93186 0.90374 0.89679 0.89265 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 10.28 71.98 0.74 -2.26 16 2 C 0.04 0.82 5.46 71.98 0.39 1.21 16 3 O -0.32 -11.19 8.22 -68.68 -0.56 -11.76 16 4 C 0.17 5.71 6.70 22.86 0.15 5.87 16 5 C -0.22 -4.84 9.03 22.34 0.20 -4.64 16 6 C -0.03 -0.56 10.03 22.30 0.22 -0.34 16 7 C -0.17 -3.86 10.02 22.24 0.22 -3.64 16 8 C -0.04 -1.22 9.61 22.53 0.22 -1.01 16 9 C -0.19 -7.77 5.89 -20.02 -0.12 -7.89 16 10 C 0.49 24.34 7.88 70.23 0.55 24.89 16 11 O -0.54 -29.24 14.89 26.79 0.40 -28.85 16 12 O -0.33 -17.66 9.11 -56.63 -0.52 -18.17 16 13 C 0.13 6.97 4.61 71.98 0.33 7.30 16 14 C 0.01 0.44 2.12 -52.93 -0.11 0.33 16 15 C -0.50 -27.66 8.76 25.60 0.22 -27.43 16 16 H 0.06 3.25 7.84 -2.91 -0.02 3.23 16 17 C 0.03 1.73 5.16 84.66 0.44 2.17 16 18 N -0.91 -53.57 10.81 21.45 0.23 -53.34 16 19 Si 0.95 43.82 29.56 68.60 2.03 45.84 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 C -0.19 -8.50 9.96 30.62 0.30 -8.20 16 24 C -0.19 -8.12 9.92 30.62 0.30 -7.82 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.11 1.36 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.39 7.66 -2.38 -0.02 1.37 16 29 H 0.08 1.39 7.66 -2.38 -0.02 1.37 16 30 H 0.17 2.39 6.30 -2.91 -0.02 2.37 16 31 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 32 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.13 4.72 7.62 -2.91 -0.02 4.69 16 34 H 0.03 1.40 7.94 -2.39 -0.02 1.38 16 35 H 0.08 4.65 6.07 -2.39 -0.01 4.64 16 36 H 0.26 14.72 8.32 -92.71 -0.77 13.95 16 37 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 38 H 0.08 3.83 8.14 -2.39 -0.02 3.81 16 39 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 40 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -74.23 341.86 6.69 -67.55 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 1.03 Total: 20.20 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 4.08 Total: -21.47 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.23 Total: -53.34 kcal Atomic # 8 Polarization: -58.10 SS G_CDS: -0.68 Total: -58.78 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -74.23 6.69 -67.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174757123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.126 kcal (2) G-P(sol) polarization free energy of solvation -74.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds