Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00229 * 2 1 4 4 C 1.50703 * 120.00015 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47198 * 94.99808 * 4 2 1 6 6 O 1.45203 * 109.47097 * 179.97438 * 5 4 2 7 7 C 1.34225 * 117.00065 * 179.97438 * 6 5 4 8 8 O 1.20830 * 120.00117 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00089 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08001 * 120.00205 * 0.02562 * 1 2 3 26 26 H 1.08009 * 120.00095 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47428 * 240.00354 * 3 2 1 28 28 H 1.09003 * 109.47125 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.46679 * 119.99715 * 3 2 1 30 30 H 1.09000 * 109.46803 * 334.99599 * 4 2 1 31 31 H 1.09005 * 109.47166 * 215.00258 * 4 2 1 32 32 H 1.09005 * 109.47055 * 60.00460 * 5 4 2 33 33 H 1.08992 * 109.47430 * 299.99973 * 5 4 2 34 34 H 1.08998 * 109.46621 * 60.00590 * 9 7 6 35 35 H 1.08996 * 109.47266 * 300.00254 * 9 7 6 36 36 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 37 37 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 38 38 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 40 40 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4377 6 8 3.1539 -2.9405 -1.4382 7 6 3.5484 -3.4159 -2.6299 8 8 3.2955 -2.8016 -3.6392 9 6 4.3068 -4.7158 -2.7090 10 6 4.6296 -5.0221 -4.1487 11 6 5.8114 -4.5655 -4.7033 12 6 6.1103 -4.8451 -6.0223 13 6 5.2224 -5.5852 -6.7921 14 8 5.5136 -5.8620 -8.0888 15 6 6.7298 -5.4895 -8.5360 16 1 7.3901 -4.9228 -7.8964 17 6 7.1328 -5.8340 -9.8173 18 7 6.3286 -6.5248 -10.5963 19 14 8.8180 -5.3186 -10.4366 20 1 9.8101 -6.3739 -10.1086 21 1 8.7673 -5.1271 -11.9083 22 1 9.2166 -4.0450 -9.7852 23 6 4.0335 -6.0369 -6.2343 24 6 3.7430 -5.7588 -4.9130 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5401 -0.9354 -0.0004 27 1 2.6901 1.3629 -0.8900 28 1 1.3552 2.1336 0.0005 29 1 2.6901 1.3627 0.8900 30 1 1.4385 -2.0856 0.4334 31 1 2.9742 -1.1992 0.5890 32 1 3.0523 -0.9028 -1.8717 33 1 1.5167 -1.7893 -2.0272 34 1 3.6967 -5.5181 -2.2944 35 1 5.2324 -4.6317 -2.1395 36 1 6.5017 -3.9904 -4.1040 37 1 7.0335 -4.4886 -6.4545 38 1 6.6104 -6.7654 -11.4927 39 1 3.3390 -6.6088 -6.8317 40 1 2.8208 -6.1137 -4.4773 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174793682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = -83.987680 kcal Electronic energy + Delta-G solvation = -21525.984842 eV Core-core repulsion = 18078.779719 eV Total energy + Delta-G solvation = -3447.205123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.41432 -38.98061 -37.37365 -36.57637 -35.84193 -32.52562 -31.60535 -30.35986 -30.16425 -27.63867 -26.90476 -25.22837 -23.73774 -21.99581 -21.53909 -20.17208 -18.74973 -17.99853 -17.48522 -17.01123 -16.67143 -16.19381 -15.23283 -14.96210 -14.61427 -14.48981 -14.34326 -13.93870 -13.62012 -13.55897 -13.40099 -13.05517 -12.72610 -12.59045 -12.11615 -12.05090 -11.92996 -11.71846 -11.53046 -11.48310 -11.28133 -10.89445 -10.78981 -10.63598 -10.57191 -10.43166 -10.25634 -9.46309 -9.33999 -8.83290 -8.17089 -7.20101 -6.45383 -4.03896 1.74834 2.15208 2.23878 2.39732 2.89868 3.13649 3.14213 3.18764 3.96722 4.42270 4.46908 4.58308 4.77104 4.84312 4.97097 5.10148 5.13409 5.16305 5.22237 5.28911 5.29678 5.33600 5.47710 5.56982 5.59799 5.63087 5.70397 5.72030 5.83319 6.20484 6.22862 6.40045 6.44601 6.49249 6.69551 6.89961 7.04379 7.22021 7.34150 7.43649 7.81323 7.93793 7.99775 9.00133 9.70024 10.72548 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.002500 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.872548 B =11197.374248 C =11538.194081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.128 4.128 3 C -0.122 4.122 4 C -0.084 4.084 5 C 0.072 3.928 6 O -0.366 6.366 7 C 0.454 3.546 8 O -0.491 6.491 9 C -0.050 4.050 10 C -0.184 4.184 11 C -0.053 4.053 12 C -0.233 4.233 13 C 0.159 3.841 14 O -0.176 6.176 15 C -0.392 4.392 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.942 3.058 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.192 4.192 24 C -0.056 4.056 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.270 0.730 39 H 0.118 0.882 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.390 9.062 20.972 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.128 4.128 3 C -0.178 4.178 4 C -0.122 4.122 5 C -0.002 4.002 6 O -0.284 6.284 7 C 0.296 3.704 8 O -0.376 6.376 9 C -0.087 4.087 10 C -0.185 4.185 11 C -0.071 4.071 12 C -0.252 4.252 13 C 0.105 3.895 14 O -0.079 6.079 15 C -0.468 4.468 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.211 4.211 24 C -0.075 4.075 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.145 0.855 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.607 9.081 20.222 23.131 hybrid contribution 0.744 0.484 -0.421 0.983 sum -5.862 9.565 19.801 22.758 Atomic orbital electron populations 1.23823 0.95125 1.02209 1.01213 1.21570 0.95382 0.95192 1.00626 1.20910 1.00381 0.94123 1.02436 1.20583 1.01144 0.94906 0.95524 1.22926 0.96192 0.83715 0.97412 1.86482 1.67999 1.39055 1.34883 1.24225 0.77426 0.87870 0.80853 1.90709 1.51967 1.58656 1.36309 1.20093 1.00255 0.91408 0.96958 1.18643 0.97958 1.08039 0.93829 1.20532 0.95359 0.96735 0.94522 1.21109 1.02582 1.06718 0.94838 1.19409 0.93104 0.91907 0.85085 1.83977 1.34464 1.70027 1.19420 1.21344 0.90846 1.35483 0.99122 0.89012 1.25305 0.99722 0.96309 0.95215 1.70038 1.35867 1.35245 1.08492 0.85700 0.80253 0.79076 0.78334 1.19847 1.20246 1.19188 1.20159 0.97907 1.07758 0.95300 1.20424 0.97180 0.96804 0.93069 0.88144 0.88253 0.91364 0.91813 0.91394 0.90135 0.90054 0.91268 0.91260 0.87780 0.87821 0.87638 0.85453 0.91990 0.86400 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.33 13.90 29.02 0.40 -0.92 16 2 C -0.13 -0.97 5.31 -101.06 -0.54 -1.51 16 3 C -0.12 -0.79 10.12 36.01 0.36 -0.43 16 4 C -0.08 -0.68 5.76 -27.88 -0.16 -0.84 16 5 C 0.07 0.77 5.45 37.16 0.20 0.97 16 6 O -0.37 -4.55 10.22 -39.24 -0.40 -4.96 16 7 C 0.45 6.66 7.95 36.01 0.29 6.95 16 8 O -0.49 -9.14 15.78 -18.75 -0.30 -9.44 16 9 C -0.05 -0.64 5.94 -29.04 -0.17 -0.82 16 10 C -0.18 -3.19 4.38 -104.58 -0.46 -3.65 16 11 C -0.05 -1.00 9.69 -39.61 -0.38 -1.39 16 12 C -0.23 -5.19 9.17 -39.39 -0.36 -5.56 16 13 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 14 O -0.18 -5.10 9.76 0.05 0.00 -5.09 16 15 C -0.39 -11.07 9.49 30.89 0.29 -10.77 16 16 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 19 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 C -0.19 -4.17 9.99 -39.39 -0.39 -4.56 16 24 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 25 H 0.10 0.61 7.83 -52.49 -0.41 0.20 16 26 H 0.10 0.66 7.99 -52.48 -0.42 0.24 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.36 7.78 -51.93 -0.40 -0.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.61 7.99 -51.93 -0.41 0.19 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 34 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 35 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 40 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -32.85 351.07 -6.90 -39.75 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.57 Total: 2.78 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.66 Total: -19.29 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.76 Total: -24.68 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.70 Total: -19.49 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.85 -6.90 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174793682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.241 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds