Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00229 * 2 1 4 4 C 1.50703 * 120.00015 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47198 * 94.99808 * 4 2 1 6 6 O 1.45203 * 109.47097 * 179.97438 * 5 4 2 7 7 C 1.34225 * 117.00065 * 179.97438 * 6 5 4 8 8 O 1.20830 * 120.00117 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00089 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08001 * 120.00205 * 0.02562 * 1 2 3 26 26 H 1.08009 * 120.00095 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47428 * 240.00354 * 3 2 1 28 28 H 1.09003 * 109.47125 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.46679 * 119.99715 * 3 2 1 30 30 H 1.09000 * 109.46803 * 334.99599 * 4 2 1 31 31 H 1.09005 * 109.47166 * 215.00258 * 4 2 1 32 32 H 1.09005 * 109.47055 * 60.00460 * 5 4 2 33 33 H 1.08992 * 109.47430 * 299.99973 * 5 4 2 34 34 H 1.08998 * 109.46621 * 60.00590 * 9 7 6 35 35 H 1.08996 * 109.47266 * 300.00254 * 9 7 6 36 36 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 37 37 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 38 38 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 40 40 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4377 6 8 3.1539 -2.9405 -1.4382 7 6 3.5484 -3.4159 -2.6299 8 8 3.2955 -2.8016 -3.6392 9 6 4.3068 -4.7158 -2.7090 10 6 4.6296 -5.0221 -4.1487 11 6 5.8114 -4.5655 -4.7033 12 6 6.1103 -4.8451 -6.0223 13 6 5.2224 -5.5852 -6.7921 14 8 5.5136 -5.8620 -8.0888 15 6 6.7298 -5.4895 -8.5360 16 1 7.3901 -4.9228 -7.8964 17 6 7.1328 -5.8340 -9.8173 18 7 6.3286 -6.5248 -10.5963 19 14 8.8180 -5.3186 -10.4366 20 1 9.8101 -6.3739 -10.1086 21 1 8.7673 -5.1271 -11.9083 22 1 9.2166 -4.0450 -9.7852 23 6 4.0335 -6.0369 -6.2343 24 6 3.7430 -5.7588 -4.9130 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5401 -0.9354 -0.0004 27 1 2.6901 1.3629 -0.8900 28 1 1.3552 2.1336 0.0005 29 1 2.6901 1.3627 0.8900 30 1 1.4385 -2.0856 0.4334 31 1 2.9742 -1.1992 0.5890 32 1 3.0523 -0.9028 -1.8717 33 1 1.5167 -1.7893 -2.0272 34 1 3.6967 -5.5181 -2.2944 35 1 5.2324 -4.6317 -2.1395 36 1 6.5017 -3.9904 -4.1040 37 1 7.0335 -4.4886 -6.4545 38 1 6.6104 -6.7654 -11.4927 39 1 3.3390 -6.6088 -6.8317 40 1 2.8208 -6.1137 -4.4773 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174793682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = -102.367036 kcal Electronic energy + Delta-G solvation = -21526.781831 eV Core-core repulsion = 18078.779719 eV Total energy + Delta-G solvation = -3448.002112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.58462 -40.68276 -38.61658 -37.85063 -36.80441 -34.42598 -33.07512 -31.81103 -31.17406 -28.45350 -28.11368 -27.11905 -24.62079 -23.66610 -22.86798 -21.54172 -19.86766 -19.38880 -18.86227 -18.53260 -17.70898 -17.32279 -16.45387 -16.35506 -16.00245 -15.78217 -15.52410 -15.43882 -15.07088 -14.70747 -14.50095 -14.34603 -14.06157 -13.83977 -13.61133 -12.99831 -12.93537 -12.83596 -12.62441 -12.52737 -12.49288 -12.33132 -12.29920 -12.12441 -12.07883 -11.49628 -11.46093 -11.19976 -10.79974 -10.02712 -9.79121 -8.96029 -8.48363 -6.16688 0.56957 0.59377 1.17602 1.26587 1.34252 1.43454 1.52045 1.86146 2.17147 2.82663 3.15705 3.49367 3.73598 3.83397 3.87574 4.01266 4.02383 4.14896 4.16955 4.19825 4.42847 4.43690 4.56680 4.64040 4.68808 4.78052 4.80059 4.85428 4.96410 5.01497 5.06300 5.13125 5.13386 5.27194 5.46288 5.53820 5.69176 5.69594 5.72482 5.90605 6.01531 6.19869 6.82224 6.96048 7.76463 8.74903 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029595 B = 0.002500 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.872548 B =11197.374248 C =11538.194081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.141 4.141 3 C -0.123 4.123 4 C -0.076 4.076 5 C 0.069 3.931 6 O -0.356 6.356 7 C 0.461 3.539 8 O -0.539 6.539 9 C -0.048 4.048 10 C -0.159 4.159 11 C -0.056 4.056 12 C -0.245 4.245 13 C 0.116 3.884 14 O -0.232 6.232 15 C -0.415 4.415 16 H 0.102 0.898 17 C -0.024 4.024 18 N -0.920 5.920 19 Si 1.020 2.980 20 H -0.261 1.261 21 H -0.271 1.271 22 H -0.254 1.254 23 C -0.207 4.207 24 C -0.053 4.053 25 H 0.109 0.891 26 H 0.102 0.898 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.119 0.881 38 H 0.273 0.727 39 H 0.114 0.886 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.089 10.016 24.675 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.141 4.141 3 C -0.180 4.180 4 C -0.114 4.114 5 C -0.005 4.005 6 O -0.273 6.273 7 C 0.305 3.695 8 O -0.428 6.428 9 C -0.085 4.085 10 C -0.160 4.160 11 C -0.073 4.073 12 C -0.264 4.264 13 C 0.065 3.935 14 O -0.138 6.138 15 C -0.491 4.491 16 H 0.119 0.881 17 C -0.221 4.221 18 N -0.558 5.558 19 Si 0.839 3.161 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.178 1.178 23 C -0.226 4.226 24 C -0.071 4.071 25 H 0.128 0.872 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.325 10.044 24.016 26.789 hybrid contribution 0.430 0.258 -1.180 1.283 sum -5.895 10.302 22.836 25.736 Atomic orbital electron populations 1.24005 0.95160 1.02903 1.00290 1.21674 0.95663 0.95360 1.01389 1.20938 1.00549 0.93926 1.02554 1.20555 1.01774 0.95362 0.93664 1.23095 0.95446 0.82767 0.99195 1.86473 1.67667 1.39616 1.33522 1.24414 0.76568 0.87830 0.80652 1.90723 1.54053 1.60172 1.37888 1.20239 1.02619 0.91690 0.93923 1.19209 0.96218 1.04484 0.96098 1.20968 0.96715 0.96390 0.93276 1.21236 1.02057 1.06721 0.96393 1.19981 0.95019 0.93802 0.84677 1.83940 1.35298 1.72743 1.21837 1.21836 0.91308 1.36020 0.99924 0.88118 1.26629 1.04320 0.96150 0.95041 1.70185 1.38574 1.37916 1.09169 0.84566 0.74472 0.79283 0.77746 1.18554 1.19564 1.17775 1.20447 0.97095 1.08043 0.97048 1.20910 0.98699 0.95972 0.91536 0.87227 0.87930 0.91992 0.91127 0.90514 0.89399 0.89157 0.91917 0.92115 0.83969 0.84181 0.84052 0.86286 0.91795 0.86802 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.27 13.90 67.79 0.94 -1.33 16 2 C -0.14 -1.84 5.31 -16.48 -0.09 -1.93 16 3 C -0.12 -1.37 10.12 71.24 0.72 -0.65 16 4 C -0.08 -1.04 5.76 29.85 0.17 -0.86 16 5 C 0.07 1.33 5.45 71.98 0.39 1.73 16 6 O -0.36 -7.56 10.22 -51.37 -0.53 -8.08 16 7 C 0.46 11.79 7.95 71.24 0.57 12.36 16 8 O -0.54 -18.91 15.78 21.95 0.35 -18.56 16 9 C -0.05 -0.98 5.94 29.10 0.17 -0.81 16 10 C -0.16 -4.97 4.38 -19.84 -0.09 -5.06 16 11 C -0.06 -1.96 9.69 22.25 0.22 -1.75 16 12 C -0.24 -11.05 9.17 22.39 0.21 -10.84 16 13 C 0.12 5.98 6.65 22.58 0.15 6.13 16 14 O -0.23 -14.36 9.76 -22.72 -0.22 -14.58 16 15 C -0.41 -24.74 9.49 67.92 0.64 -24.09 16 16 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 17 C -0.02 -1.39 5.49 84.84 0.47 -0.92 16 18 N -0.92 -57.42 13.67 21.62 0.30 -57.13 16 19 Si 1.02 43.55 29.55 68.60 2.03 45.57 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 22 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 23 C -0.21 -9.16 9.99 22.39 0.22 -8.94 16 24 C -0.05 -1.83 9.69 22.25 0.22 -1.62 16 25 H 0.11 1.10 7.83 -2.91 -0.02 1.08 16 26 H 0.10 1.15 7.99 -2.91 -0.02 1.13 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.67 7.78 -2.39 -0.02 0.66 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 1.07 7.99 -2.39 -0.02 1.05 16 31 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.06 1.31 8.13 -2.38 -0.02 1.29 16 33 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 34 H 0.14 1.99 8.08 -2.39 -0.02 1.97 16 35 H 0.14 2.01 8.08 -2.39 -0.02 1.99 16 36 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 37 H 0.12 5.44 5.64 -2.91 -0.02 5.43 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 40 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -77.43 351.07 7.86 -69.56 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 1.03 Total: 21.81 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 4.91 Total: -38.59 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.30 Total: -57.13 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -0.40 Total: -41.23 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -77.43 7.86 -69.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174793682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.805 kcal (2) G-P(sol) polarization free energy of solvation -77.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds