Wall clock time and date at job start Tue Mar 31 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47159 * 2 1 4 4 O 1.45202 * 109.47343 * 119.99165 * 2 1 3 5 5 C 1.34752 * 117.00426 * 270.00411 * 4 2 1 6 6 O 1.21507 * 120.00396 * 359.97438 * 5 4 2 7 7 C 1.47397 * 119.99829 * 179.97438 * 5 4 2 8 8 C 1.39724 * 120.20695 * 359.97438 * 7 5 4 9 9 C 1.37808 * 119.91792 * 179.72586 * 8 7 5 10 10 C 1.38585 * 120.32685 * 0.02562 * 9 8 7 11 11 C 1.38022 * 120.41793 * 0.02562 * 10 9 8 12 12 C 1.38828 * 120.07737 * 359.95698 * 11 10 9 13 13 O 1.35502 * 120.16754 * 180.02562 * 12 11 10 14 14 C 1.34815 * 117.00022 * 354.39530 * 13 12 11 15 15 H 1.08004 * 120.00001 * 5.06637 * 14 13 12 16 16 C 1.38702 * 120.00250 * 185.06449 * 14 13 12 17 17 N 1.31512 * 120.00207 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99865 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46928 * 90.00170 * 18 16 14 20 20 H 1.48508 * 109.46849 * 209.99960 * 18 16 14 21 21 H 1.48500 * 109.46988 * 329.99808 * 18 16 14 22 22 C 1.52992 * 109.47482 * 239.99915 * 2 1 3 23 23 C 1.53790 * 113.61363 * 279.13880 * 22 2 1 24 24 C 1.53955 * 87.01766 * 220.04662 * 23 22 2 25 25 C 1.53780 * 87.11531 * 25.35723 * 24 23 22 26 26 H 1.09001 * 109.47137 * 60.00210 * 1 2 3 27 27 H 1.09000 * 109.47038 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.46859 * 300.00545 * 1 2 3 29 29 H 1.08007 * 120.04244 * 359.75184 * 8 7 5 30 30 H 1.07999 * 119.83264 * 180.02562 * 9 8 7 31 31 H 1.08006 * 119.79054 * 179.97438 * 10 9 8 32 32 H 1.08006 * 119.96083 * 179.97438 * 11 10 9 33 33 H 0.97001 * 120.00635 * 180.02562 * 17 16 14 34 34 H 1.09001 * 112.84946 * 50.32579 * 22 2 1 35 35 H 1.09004 * 113.61001 * 334.56004 * 23 22 2 36 36 H 1.08992 * 113.61403 * 105.46260 * 23 22 2 37 37 H 1.09003 * 113.53210 * 270.80898 * 24 23 22 38 38 H 1.08993 * 113.74367 * 139.94539 * 24 23 22 39 39 H 1.08996 * 113.61990 * 220.08836 * 25 24 23 40 40 H 1.09000 * 113.60981 * 89.18575 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6843 1.1857 5 6 2.2179 0.0672 2.2854 6 8 1.9977 1.2617 2.2545 7 6 2.7081 -0.5600 3.5260 8 6 2.9622 -1.9333 3.5666 9 6 3.4257 -2.5125 4.7280 10 6 3.6411 -1.7394 5.8579 11 6 3.3936 -0.3818 5.8333 12 6 2.9267 0.2194 4.6724 13 8 2.6836 1.5522 4.6461 14 6 2.8037 2.2194 5.8114 15 1 3.1614 1.7072 6.6925 16 6 2.4680 3.5634 5.8789 17 7 2.0320 4.1870 4.8062 18 14 2.6352 4.4879 7.4935 19 1 3.9946 5.0782 7.5874 20 1 1.6203 5.5706 7.5513 21 1 2.4234 3.5500 8.6251 22 6 2.0400 -0.7212 -1.2491 23 6 2.0344 -2.2538 -1.1211 24 6 3.3856 -2.2400 -1.8588 25 6 3.5733 -0.8094 -1.3268 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 2.7959 -2.5402 2.6888 30 1 3.6221 -3.5741 4.7577 31 1 4.0042 -2.2024 6.7636 32 1 3.5637 0.2135 6.7183 33 1 1.7975 5.1271 4.8533 34 1 1.5765 -0.3581 -2.1664 35 1 2.1025 -2.6061 -0.0918 36 1 1.2342 -2.7359 -1.6825 37 1 3.2899 -2.2934 -2.9433 38 1 4.1094 -2.9519 -1.4623 39 1 4.0137 -0.1273 -2.0540 40 1 4.0629 -0.7662 -0.3539 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177290890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:38 Heat of formation + Delta-G solvation = -71.921080 kcal Electronic energy + Delta-G solvation = -23299.955372 eV Core-core repulsion = 19853.273495 eV Total energy + Delta-G solvation = -3446.681876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.09204 -39.10164 -38.02582 -36.41481 -35.30688 -32.41338 -31.69559 -30.36238 -28.96715 -25.91144 -25.49680 -25.33200 -23.75742 -21.87601 -21.16923 -20.20413 -18.98377 -18.07135 -17.59261 -16.55535 -16.03408 -15.48887 -15.10668 -14.80699 -14.54352 -14.40640 -13.85403 -13.72312 -13.46576 -13.13508 -12.80016 -12.55989 -12.51740 -12.30692 -11.87559 -11.78911 -11.75105 -11.40570 -11.18109 -11.08952 -10.93030 -10.80548 -10.51115 -10.47861 -10.39343 -9.97012 -9.77558 -9.68821 -9.21434 -8.93617 -8.32539 -7.38203 -6.51288 -4.11220 1.61422 2.30336 3.08464 3.09746 3.14464 3.33164 3.49566 3.88525 4.54670 4.59942 4.72751 4.76346 4.90494 5.01367 5.13426 5.29797 5.38229 5.46543 5.53521 5.56513 5.67310 5.71826 5.75329 5.89760 5.91814 5.95775 6.04665 6.09055 6.12630 6.14958 6.33031 6.37779 6.57904 6.59049 6.67319 6.90071 7.03438 7.14605 7.23353 7.33532 7.65521 7.87108 8.78460 8.89058 9.58281 10.62412 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.004761 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.612901 B = 5879.836296 C = 6986.094973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 H 0.083 0.917 4 O -0.357 6.357 5 C 0.496 3.504 6 O -0.477 6.477 7 C -0.215 4.215 8 C -0.016 4.016 9 C -0.235 4.235 10 C -0.044 4.044 11 C -0.239 4.239 12 C 0.190 3.810 13 O -0.125 6.125 14 C -0.403 4.403 15 H 0.096 0.904 16 C 0.045 3.955 17 N -0.832 5.832 18 Si 0.942 3.058 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.265 1.265 22 C -0.110 4.110 23 C -0.129 4.129 24 C -0.142 4.142 25 C -0.136 4.136 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.134 0.866 33 H 0.272 0.728 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 -11.114 -7.755 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.101 0.899 4 O -0.276 6.276 5 C 0.342 3.658 6 O -0.364 6.364 7 C -0.218 4.218 8 C -0.034 4.034 9 C -0.254 4.254 10 C -0.063 4.063 11 C -0.258 4.258 12 C 0.131 3.869 13 O -0.023 6.023 14 C -0.479 4.479 15 H 0.113 0.887 16 C -0.163 4.163 17 N -0.463 5.463 18 Si 0.766 3.234 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.190 1.190 22 C -0.128 4.128 23 C -0.166 4.166 24 C -0.180 4.180 25 C -0.173 4.173 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.151 0.849 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.455 -10.268 -8.057 13.060 hybrid contribution 0.048 0.590 0.811 1.004 sum 0.503 -9.678 -7.246 12.101 Atomic orbital electron populations 1.22126 0.94902 1.02427 1.02791 1.22312 0.93857 0.97042 0.82755 0.89873 1.86531 1.78453 1.42377 1.20263 1.21086 0.75932 0.85523 0.83301 1.90985 1.46939 1.15153 1.83273 1.18060 1.19080 0.93515 0.91151 1.20946 0.92799 0.92273 0.97391 1.20535 1.11501 0.99219 0.94149 1.20959 0.94783 0.93272 0.97262 1.21108 1.10054 0.95529 0.99158 1.19250 0.90871 0.84980 0.91822 1.84146 1.71323 1.13149 1.33677 1.21529 1.46252 0.93064 0.87055 0.88681 1.25408 0.95751 0.95897 0.99241 1.70115 1.37238 1.10917 1.28047 0.85702 0.78578 0.79204 0.79892 1.19673 1.20073 1.18975 1.22723 0.96916 0.96757 0.96411 1.22888 0.96909 0.95117 1.01705 1.22816 0.98112 0.97426 0.99607 1.22920 0.95663 0.96845 1.01901 0.91453 0.91955 0.91773 0.85864 0.87043 0.87009 0.84877 0.91743 0.88068 0.88780 0.92004 0.90693 0.91539 0.91798 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.53 37.15 0.35 -2.01 16 2 C 0.10 1.51 2.57 -26.74 -0.07 1.44 16 3 H 0.08 1.50 7.16 -51.93 -0.37 1.13 16 4 O -0.36 -6.51 7.24 -40.63 -0.29 -6.80 16 5 C 0.50 11.27 7.86 34.46 0.27 11.54 16 6 O -0.48 -12.89 14.43 -26.59 -0.38 -13.27 16 7 C -0.22 -4.81 5.89 -104.83 -0.62 -5.42 16 8 C -0.02 -0.29 9.61 -39.18 -0.38 -0.66 16 9 C -0.24 -3.92 10.02 -39.61 -0.40 -4.32 16 10 C -0.04 -0.78 10.03 -39.53 -0.40 -1.17 16 11 C -0.24 -5.10 9.16 -39.44 -0.36 -5.46 16 12 C 0.19 4.72 6.66 -38.58 -0.26 4.46 16 13 O -0.12 -3.65 7.84 -21.01 -0.16 -3.81 16 14 C -0.40 -11.27 9.49 30.90 0.29 -10.97 16 15 H 0.10 2.40 5.21 -52.48 -0.27 2.13 16 16 C 0.05 1.24 5.49 -17.52 -0.10 1.14 16 17 N -0.83 -24.74 13.67 55.48 0.76 -23.98 16 18 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 22 C -0.11 -1.34 3.58 -89.81 -0.32 -1.66 16 23 C -0.13 -1.44 7.49 -25.82 -0.19 -1.64 16 24 C -0.14 -1.46 8.09 -25.83 -0.21 -1.67 16 25 C -0.14 -1.66 7.54 -25.92 -0.20 -1.85 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 29 H 0.12 1.91 7.61 -52.48 -0.40 1.52 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.13 2.77 5.64 -52.48 -0.30 2.47 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.18 7.01 -51.93 -0.36 0.82 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.23 7.72 -51.93 -0.40 0.83 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -32.29 336.96 -8.07 -40.36 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.47 Total: 5.49 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -2.57 Total: -18.26 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.76 Total: -23.98 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.84 Total: -23.88 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.29 -8.07 -40.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177290890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.565 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds