Wall clock time and date at job start Tue Mar 31 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47159 * 2 1 4 4 O 1.45202 * 109.47343 * 119.99165 * 2 1 3 5 5 C 1.34752 * 117.00426 * 270.00411 * 4 2 1 6 6 O 1.21507 * 120.00396 * 359.97438 * 5 4 2 7 7 C 1.47397 * 119.99829 * 179.97438 * 5 4 2 8 8 C 1.39724 * 120.20695 * 359.97438 * 7 5 4 9 9 C 1.37808 * 119.91792 * 179.72586 * 8 7 5 10 10 C 1.38585 * 120.32685 * 0.02562 * 9 8 7 11 11 C 1.38022 * 120.41793 * 0.02562 * 10 9 8 12 12 C 1.38828 * 120.07737 * 359.95698 * 11 10 9 13 13 O 1.35502 * 120.16754 * 180.02562 * 12 11 10 14 14 C 1.34815 * 117.00022 * 354.39530 * 13 12 11 15 15 H 1.08004 * 120.00001 * 5.06637 * 14 13 12 16 16 C 1.38702 * 120.00250 * 185.06449 * 14 13 12 17 17 N 1.31512 * 120.00207 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99865 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46928 * 90.00170 * 18 16 14 20 20 H 1.48508 * 109.46849 * 209.99960 * 18 16 14 21 21 H 1.48500 * 109.46988 * 329.99808 * 18 16 14 22 22 C 1.52992 * 109.47482 * 239.99915 * 2 1 3 23 23 C 1.53790 * 113.61363 * 279.13880 * 22 2 1 24 24 C 1.53955 * 87.01766 * 220.04662 * 23 22 2 25 25 C 1.53780 * 87.11531 * 25.35723 * 24 23 22 26 26 H 1.09001 * 109.47137 * 60.00210 * 1 2 3 27 27 H 1.09000 * 109.47038 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.46859 * 300.00545 * 1 2 3 29 29 H 1.08007 * 120.04244 * 359.75184 * 8 7 5 30 30 H 1.07999 * 119.83264 * 180.02562 * 9 8 7 31 31 H 1.08006 * 119.79054 * 179.97438 * 10 9 8 32 32 H 1.08006 * 119.96083 * 179.97438 * 11 10 9 33 33 H 0.97001 * 120.00635 * 180.02562 * 17 16 14 34 34 H 1.09001 * 112.84946 * 50.32579 * 22 2 1 35 35 H 1.09004 * 113.61001 * 334.56004 * 23 22 2 36 36 H 1.08992 * 113.61403 * 105.46260 * 23 22 2 37 37 H 1.09003 * 113.53210 * 270.80898 * 24 23 22 38 38 H 1.08993 * 113.74367 * 139.94539 * 24 23 22 39 39 H 1.08996 * 113.61990 * 220.08836 * 25 24 23 40 40 H 1.09000 * 113.60981 * 89.18575 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6843 1.1857 5 6 2.2179 0.0672 2.2854 6 8 1.9977 1.2617 2.2545 7 6 2.7081 -0.5600 3.5260 8 6 2.9622 -1.9333 3.5666 9 6 3.4257 -2.5125 4.7280 10 6 3.6411 -1.7394 5.8579 11 6 3.3936 -0.3818 5.8333 12 6 2.9267 0.2194 4.6724 13 8 2.6836 1.5522 4.6461 14 6 2.8037 2.2194 5.8114 15 1 3.1614 1.7072 6.6925 16 6 2.4680 3.5634 5.8789 17 7 2.0320 4.1870 4.8062 18 14 2.6352 4.4879 7.4935 19 1 3.9946 5.0782 7.5874 20 1 1.6203 5.5706 7.5513 21 1 2.4234 3.5500 8.6251 22 6 2.0400 -0.7212 -1.2491 23 6 2.0344 -2.2538 -1.1211 24 6 3.3856 -2.2400 -1.8588 25 6 3.5733 -0.8094 -1.3268 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 2.7959 -2.5402 2.6888 30 1 3.6221 -3.5741 4.7577 31 1 4.0042 -2.2024 6.7636 32 1 3.5637 0.2135 6.7183 33 1 1.7975 5.1271 4.8533 34 1 1.5765 -0.3581 -2.1664 35 1 2.1025 -2.6061 -0.0918 36 1 1.2342 -2.7359 -1.6825 37 1 3.2899 -2.2934 -2.9433 38 1 4.1094 -2.9519 -1.4623 39 1 4.0137 -0.1273 -2.0540 40 1 4.0629 -0.7662 -0.3539 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177290890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:38 Heat of formation + Delta-G solvation = -90.094589 kcal Electronic energy + Delta-G solvation = -23300.743434 eV Core-core repulsion = 19853.273495 eV Total energy + Delta-G solvation = -3447.469939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.68976 -40.65260 -39.40269 -38.12829 -36.95225 -34.38237 -33.07036 -31.89262 -30.64073 -27.48650 -26.92055 -26.32872 -25.33296 -23.47887 -22.56803 -21.67727 -20.12253 -19.90386 -19.29585 -18.27193 -17.52293 -16.92775 -16.40663 -16.37213 -16.10573 -15.97325 -15.57066 -15.33617 -14.98163 -14.60580 -14.38817 -14.03360 -13.68606 -13.58294 -13.34026 -13.09564 -13.04344 -12.86919 -12.69887 -12.57563 -12.42718 -12.34011 -12.13650 -11.72314 -11.57193 -11.38615 -11.06468 -11.00112 -10.88246 -10.86919 -9.92839 -9.12590 -8.49331 -6.20744 -0.03643 0.68142 1.32097 1.43547 1.51395 1.77482 1.78352 2.13385 2.81517 3.14357 3.36988 3.54443 3.68895 3.79687 3.92174 3.99536 4.08194 4.17294 4.25094 4.31469 4.35269 4.50180 4.54179 4.74519 4.80506 4.82352 4.90962 4.97164 4.98250 5.04617 5.06675 5.11310 5.15883 5.19606 5.32156 5.46909 5.51953 5.64195 5.65945 5.68625 5.92338 6.11831 6.89509 7.04789 7.71091 8.70912 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.004761 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.612901 B = 5879.836296 C = 6986.094973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.086 3.914 3 H 0.049 0.951 4 O -0.340 6.340 5 C 0.497 3.503 6 O -0.533 6.533 7 C -0.237 4.237 8 C -0.012 4.012 9 C -0.204 4.204 10 C -0.028 4.028 11 C -0.257 4.257 12 C 0.155 3.845 13 O -0.188 6.188 14 C -0.429 4.429 15 H 0.111 0.889 16 C -0.020 4.020 17 N -0.904 5.904 18 Si 1.024 2.976 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.246 1.246 22 C -0.106 4.106 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.147 4.147 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.026 0.974 29 H 0.155 0.845 30 H 0.166 0.834 31 H 0.161 0.839 32 H 0.130 0.870 33 H 0.272 0.728 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -15.467 -7.712 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 H 0.067 0.933 4 O -0.258 6.258 5 C 0.344 3.656 6 O -0.424 6.424 7 C -0.240 4.240 8 C -0.030 4.030 9 C -0.222 4.222 10 C -0.046 4.046 11 C -0.276 4.276 12 C 0.100 3.900 13 O -0.090 6.090 14 C -0.504 4.504 15 H 0.128 0.872 16 C -0.220 4.220 17 N -0.540 5.540 18 Si 0.842 3.158 19 H -0.186 1.186 20 H -0.198 1.198 21 H -0.169 1.169 22 C -0.124 4.124 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.185 4.185 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.045 0.955 29 H 0.173 0.827 30 H 0.183 0.817 31 H 0.178 0.822 32 H 0.148 0.852 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.170 -14.727 -8.023 16.811 hybrid contribution -0.105 1.494 0.648 1.631 sum 1.065 -13.233 -7.376 15.187 Atomic orbital electron populations 1.22111 0.93581 1.03587 1.02383 1.22671 0.95046 0.95951 0.83260 0.93301 1.86506 1.77885 1.41444 1.19973 1.21403 0.74735 0.84982 0.84464 1.90970 1.49393 1.17674 1.84329 1.18530 1.19569 0.95457 0.90426 1.21370 0.91745 0.90292 0.99573 1.21219 1.07020 1.01600 0.92360 1.21526 0.92181 0.91383 0.99501 1.21290 1.10780 0.97562 0.97926 1.20011 0.91422 0.84530 0.94067 1.84152 1.74990 1.15307 1.34556 1.22097 1.46808 0.93852 0.87663 0.87161 1.26796 0.95033 0.96669 1.03478 1.70305 1.41107 1.11297 1.31245 0.84538 0.78818 0.77621 0.74848 1.18600 1.19761 1.16916 1.22863 0.96905 0.97561 0.95056 1.22869 0.98356 0.93665 1.01408 1.22788 0.97385 0.95436 1.00830 1.22947 0.95514 0.99155 1.00885 0.88625 0.89840 0.95469 0.82725 0.81667 0.82187 0.85196 0.91875 0.85313 0.90303 0.89696 0.88364 0.91056 0.91011 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.60 9.53 71.98 0.69 -3.92 16 2 C 0.09 2.78 2.57 30.59 0.08 2.86 16 3 H 0.05 1.93 7.16 -2.39 -0.02 1.91 16 4 O -0.34 -12.73 7.24 -56.62 -0.41 -13.14 16 5 C 0.50 23.99 7.86 70.23 0.55 24.55 16 6 O -0.53 -31.67 14.43 26.81 0.39 -31.28 16 7 C -0.24 -10.85 5.89 -20.00 -0.12 -10.96 16 8 C -0.01 -0.39 9.61 22.53 0.22 -0.18 16 9 C -0.20 -5.68 10.02 22.25 0.22 -5.46 16 10 C -0.03 -0.86 10.03 22.30 0.22 -0.64 16 11 C -0.26 -10.83 9.16 22.36 0.20 -10.62 16 12 C 0.15 8.03 6.66 22.92 0.15 8.19 16 13 O -0.19 -11.89 7.84 1.03 0.01 -11.88 16 14 C -0.43 -25.60 9.49 67.93 0.64 -24.96 16 15 H 0.11 5.85 5.21 -2.91 -0.02 5.83 16 16 C -0.02 -1.18 5.49 84.85 0.47 -0.71 16 17 N -0.90 -58.49 13.67 21.62 0.30 -58.20 16 18 Si 1.02 43.50 29.55 68.60 2.03 45.52 16 19 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 22 C -0.11 -2.42 3.58 -10.27 -0.04 -2.46 16 23 C -0.13 -2.43 7.49 31.18 0.23 -2.19 16 24 C -0.13 -2.21 8.09 31.18 0.25 -1.96 16 25 C -0.15 -3.46 7.54 31.12 0.23 -3.22 16 26 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.16 4.19 7.61 -2.91 -0.02 4.17 16 30 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.13 5.46 5.64 -2.91 -0.02 5.44 16 33 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 34 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.08 1.77 7.01 -2.38 -0.02 1.76 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.67 7.72 -2.39 -0.02 1.65 16 Total: -1.00 -81.90 336.96 7.36 -74.53 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 1.04 Total: 26.13 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 4.01 Total: -31.69 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.30 Total: -58.20 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -0.01 Total: -56.31 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -81.90 7.36 -74.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177290890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.560 kcal (2) G-P(sol) polarization free energy of solvation -81.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds