Wall clock time and date at job start Tue Mar 31 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46956 * 2 1 4 4 C 1.53004 * 109.47034 * 240.00460 * 2 1 3 5 5 C 1.50697 * 109.47634 * 120.00122 * 2 1 3 6 6 O 1.20781 * 119.99686 * 359.97438 * 5 2 1 7 7 C 1.49057 * 120.00547 * 179.97438 * 5 2 1 8 8 O 1.21277 * 119.99541 * 0.02562 * 7 5 2 9 9 O 1.34585 * 120.00529 * 179.97438 * 7 5 2 10 10 C 1.45202 * 117.00468 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.47062 * 180.02562 * 10 9 7 12 12 C 1.38635 * 119.74771 * 269.72351 * 11 10 9 13 13 C 1.37624 * 120.24964 * 179.72094 * 12 11 10 14 14 C 1.40717 * 119.73679 * 0.57836 * 13 12 11 15 15 C 1.41402 * 120.23847 * 179.67688 * 14 13 12 16 16 H 1.07998 * 120.00074 * 204.40505 * 15 14 13 17 17 C 1.39945 * 119.99874 * 24.40735 * 15 14 13 18 18 N 1.30824 * 120.00405 * 17.84641 * 17 15 14 19 19 Si 1.86797 * 119.99936 * 197.84469 * 17 15 14 20 20 H 1.48502 * 109.47151 * 90.00147 * 19 17 15 21 21 H 1.48497 * 109.47468 * 210.00136 * 19 17 15 22 22 H 1.48500 * 109.47187 * 330.00150 * 19 17 15 23 23 C 1.40710 * 119.51686 * 359.69906 * 14 13 12 24 24 C 1.37615 * 119.74272 * 0.02562 * 23 14 13 25 25 H 1.09009 * 109.46986 * 299.99733 * 1 2 3 26 26 H 1.09003 * 109.47661 * 59.99637 * 1 2 3 27 27 H 1.09000 * 109.46985 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46935 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47537 * 300.00203 * 3 2 1 30 30 H 1.08998 * 109.47067 * 60.00819 * 3 2 1 31 31 H 1.09000 * 109.46784 * 299.99571 * 4 2 1 32 32 H 1.09000 * 109.47169 * 59.99975 * 4 2 1 33 33 H 1.08997 * 109.46755 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.46887 * 300.00334 * 10 9 7 35 35 H 1.08998 * 109.46721 * 60.00032 * 10 9 7 36 36 H 1.08005 * 119.87970 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.13071 * 180.27955 * 13 12 11 38 38 H 0.97002 * 120.00394 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.12782 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.87400 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2476 -1.1690 2.0257 7 6 3.4979 -0.8471 1.4660 8 8 4.2859 -0.3861 0.6676 9 8 3.9466 -1.4811 2.5651 10 6 5.3861 -1.5762 2.7298 11 6 5.6979 -2.3135 4.0066 12 6 5.8460 -1.6070 5.1903 13 6 6.1251 -2.2704 6.3633 14 6 6.2723 -3.6698 6.3558 15 6 6.5659 -4.3614 7.5537 16 1 7.0560 -5.3230 7.5158 17 6 6.2213 -3.7998 8.7883 18 7 5.3390 -2.8355 8.8450 19 14 7.0210 -4.4272 10.3556 20 1 8.2562 -3.6488 10.6268 21 1 6.0769 -4.2688 11.4908 22 1 7.3657 -5.8626 10.1950 23 6 6.1256 -4.3758 5.1475 24 6 5.8408 -3.6922 3.9876 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7488 -1.2493 32 1 1.6766 -0.2073 -2.1393 33 1 3.1299 -0.7207 -1.2495 34 1 5.8135 -2.1164 1.8851 35 1 5.8136 -0.5746 2.7744 36 1 5.7378 -0.5324 5.1926 37 1 6.2356 -1.7186 7.2851 38 1 5.1004 -2.4460 9.7007 39 1 6.2368 -5.4500 5.1304 40 1 5.7273 -4.2321 3.0591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271812639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:12 Heat of formation + Delta-G solvation = -113.924962 kcal Electronic energy + Delta-G solvation = -22277.338611 eV Core-core repulsion = 18828.835310 eV Total energy + Delta-G solvation = -3448.503301 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.98960 -39.23175 -37.70011 -36.67974 -35.57922 -33.88422 -30.86466 -29.39233 -27.98328 -27.58612 -27.35954 -26.04153 -23.83075 -21.89977 -21.10965 -20.09718 -19.11395 -17.72308 -17.40737 -16.82057 -16.39288 -15.83057 -15.41489 -14.98483 -14.63574 -14.04898 -13.94413 -13.87914 -13.30712 -13.20591 -12.66127 -12.53378 -12.44528 -12.40586 -12.33548 -12.04975 -11.87171 -11.77502 -11.65525 -11.25744 -11.21100 -11.03307 -10.97212 -10.82814 -10.47893 -10.25950 -9.83263 -9.60209 -9.47831 -9.23783 -7.58249 -7.47173 -6.87850 -4.48114 0.78302 2.18186 2.75688 2.77628 2.99511 3.02271 3.05301 3.15216 3.84727 4.14778 4.38581 4.54545 4.56261 4.74196 4.99857 5.30508 5.35216 5.51178 5.52883 5.54998 5.58038 5.59406 5.61617 5.66369 5.84049 5.97277 5.98842 5.99218 6.21987 6.28785 6.58750 6.77765 6.85546 6.96112 7.16212 7.24632 7.49890 7.69480 7.79371 7.94196 7.98415 8.17499 8.52295 8.76866 8.85026 10.05778 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.002950 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.334042 B = 9489.828626 C = 9779.452107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.146 4.146 5 C 0.375 3.625 6 O -0.385 6.385 7 C 0.418 3.582 8 O -0.483 6.483 9 O -0.327 6.327 10 C 0.132 3.868 11 C -0.240 4.240 12 C -0.074 4.074 13 C -0.170 4.170 14 C 0.119 3.881 15 C -0.455 4.455 16 H 0.081 0.919 17 C 0.074 3.926 18 N -0.783 5.783 19 Si 0.912 3.088 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.230 4.230 24 C -0.062 4.062 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.283 0.717 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 6.420 -13.719 16.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.091 4.091 3 C -0.203 4.203 4 C -0.203 4.203 5 C 0.243 3.757 6 O -0.252 6.252 7 C 0.258 3.742 8 O -0.373 6.373 9 O -0.243 6.243 10 C 0.060 3.940 11 C -0.241 4.241 12 C -0.093 4.093 13 C -0.190 4.190 14 C 0.116 3.884 15 C -0.483 4.483 16 H 0.099 0.901 17 C -0.145 4.145 18 N -0.407 5.407 19 Si 0.736 3.264 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.249 4.249 24 C -0.080 4.080 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.968 6.419 -13.287 15.918 hybrid contribution 0.421 -0.222 0.759 0.896 sum -5.547 6.197 -12.528 15.037 Atomic orbital electron populations 1.21803 0.91694 1.03132 1.02754 1.20974 0.97623 0.97351 0.93197 1.21947 1.03237 0.92354 1.02793 1.21945 1.03230 0.99970 0.95164 1.24373 0.86265 0.77757 0.87345 1.90473 1.57547 1.34165 1.42998 1.24402 0.92221 0.76735 0.80804 1.90712 1.57740 1.43838 1.44975 1.86935 1.29894 1.67253 1.40190 1.21906 0.74816 0.99948 0.97308 1.18639 1.18797 0.93766 0.92930 1.20538 0.98859 0.97295 0.92581 1.21295 1.06642 0.94514 0.96523 1.17698 0.86676 0.91904 0.92091 1.19703 1.33630 1.04921 0.90090 0.90087 1.25990 0.93040 0.94003 1.01462 1.69831 1.22156 1.20447 1.28297 0.86253 0.79810 0.80437 0.79930 1.19128 1.20182 1.18486 1.20959 1.12836 0.97765 0.93375 1.20387 0.98087 0.92876 0.96675 0.91715 0.91209 0.91729 0.90224 0.90915 0.92217 0.92240 0.90916 0.90227 0.91667 0.91602 0.89305 0.86186 0.90562 0.88646 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 7.76 37.15 0.29 -0.90 16 2 C -0.09 -0.92 0.76 -155.66 -0.12 -1.04 16 3 C -0.15 -1.32 8.29 37.16 0.31 -1.01 16 4 C -0.15 -1.30 8.29 37.16 0.31 -0.99 16 5 C 0.37 5.31 6.03 -29.82 -0.18 5.13 16 6 O -0.38 -6.41 16.58 -7.62 -0.13 -6.54 16 7 C 0.42 6.80 7.69 35.22 0.27 7.07 16 8 O -0.48 -7.70 13.17 -19.09 -0.25 -7.95 16 9 O -0.33 -6.37 10.06 -45.31 -0.46 -6.82 16 10 C 0.13 2.50 5.59 36.01 0.20 2.70 16 11 C -0.24 -5.36 5.54 -104.33 -0.58 -5.94 16 12 C -0.07 -1.75 9.67 -39.66 -0.38 -2.13 16 13 C -0.17 -4.40 8.70 -38.87 -0.34 -4.74 16 14 C 0.12 3.15 5.58 -106.82 -0.60 2.55 16 15 C -0.45 -11.83 9.05 -37.74 -0.34 -12.18 16 16 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 17 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 18 N -0.78 -19.95 10.95 55.55 0.61 -19.34 16 19 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 21 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 C -0.23 -5.62 9.80 -38.88 -0.38 -6.00 16 24 C -0.06 -1.40 9.67 -39.66 -0.38 -1.78 16 25 H 0.06 0.59 8.10 -51.92 -0.42 0.17 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.08 0.83 6.43 -51.92 -0.33 0.49 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.82 6.43 -51.93 -0.33 0.48 16 34 H 0.07 1.13 8.07 -51.93 -0.42 0.72 16 35 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 37 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 38 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 39 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 40 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -28.39 341.68 -7.72 -36.11 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.60 Total: 3.76 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -2.01 Total: -17.54 kcal Atomic # 7 Polarization: -19.95 SS G_CDS: 0.61 Total: -19.34 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.83 Total: -21.32 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.39 -7.72 -36.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271812639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.814 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds