Wall clock time and date at job start Tue Mar 31 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46956 * 2 1 4 4 C 1.53004 * 109.47034 * 240.00460 * 2 1 3 5 5 C 1.50697 * 109.47634 * 120.00122 * 2 1 3 6 6 O 1.20781 * 119.99686 * 359.97438 * 5 2 1 7 7 C 1.49057 * 120.00547 * 179.97438 * 5 2 1 8 8 O 1.21277 * 119.99541 * 0.02562 * 7 5 2 9 9 O 1.34585 * 120.00529 * 179.97438 * 7 5 2 10 10 C 1.45202 * 117.00468 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.47062 * 180.02562 * 10 9 7 12 12 C 1.38635 * 119.74771 * 269.72351 * 11 10 9 13 13 C 1.37624 * 120.24964 * 179.72094 * 12 11 10 14 14 C 1.40717 * 119.73679 * 0.57836 * 13 12 11 15 15 C 1.41402 * 120.23847 * 179.67688 * 14 13 12 16 16 H 1.07998 * 120.00074 * 204.40505 * 15 14 13 17 17 C 1.39945 * 119.99874 * 24.40735 * 15 14 13 18 18 N 1.30824 * 120.00405 * 17.84641 * 17 15 14 19 19 Si 1.86797 * 119.99936 * 197.84469 * 17 15 14 20 20 H 1.48502 * 109.47151 * 90.00147 * 19 17 15 21 21 H 1.48497 * 109.47468 * 210.00136 * 19 17 15 22 22 H 1.48500 * 109.47187 * 330.00150 * 19 17 15 23 23 C 1.40710 * 119.51686 * 359.69906 * 14 13 12 24 24 C 1.37615 * 119.74272 * 0.02562 * 23 14 13 25 25 H 1.09009 * 109.46986 * 299.99733 * 1 2 3 26 26 H 1.09003 * 109.47661 * 59.99637 * 1 2 3 27 27 H 1.09000 * 109.46985 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46935 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47537 * 300.00203 * 3 2 1 30 30 H 1.08998 * 109.47067 * 60.00819 * 3 2 1 31 31 H 1.09000 * 109.46784 * 299.99571 * 4 2 1 32 32 H 1.09000 * 109.47169 * 59.99975 * 4 2 1 33 33 H 1.08997 * 109.46755 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.46887 * 300.00334 * 10 9 7 35 35 H 1.08998 * 109.46721 * 60.00032 * 10 9 7 36 36 H 1.08005 * 119.87970 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.13071 * 180.27955 * 13 12 11 38 38 H 0.97002 * 120.00394 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.12782 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.87400 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2476 -1.1690 2.0257 7 6 3.4979 -0.8471 1.4660 8 8 4.2859 -0.3861 0.6676 9 8 3.9466 -1.4811 2.5651 10 6 5.3861 -1.5762 2.7298 11 6 5.6979 -2.3135 4.0066 12 6 5.8460 -1.6070 5.1903 13 6 6.1251 -2.2704 6.3633 14 6 6.2723 -3.6698 6.3558 15 6 6.5659 -4.3614 7.5537 16 1 7.0560 -5.3230 7.5158 17 6 6.2213 -3.7998 8.7883 18 7 5.3390 -2.8355 8.8450 19 14 7.0210 -4.4272 10.3556 20 1 8.2562 -3.6488 10.6268 21 1 6.0769 -4.2688 11.4908 22 1 7.3657 -5.8626 10.1950 23 6 6.1256 -4.3758 5.1475 24 6 5.8408 -3.6922 3.9876 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7488 -1.2493 32 1 1.6766 -0.2073 -2.1393 33 1 3.1299 -0.7207 -1.2495 34 1 5.8135 -2.1164 1.8851 35 1 5.8136 -0.5746 2.7744 36 1 5.7378 -0.5324 5.1926 37 1 6.2356 -1.7186 7.2851 38 1 5.1004 -2.4460 9.7007 39 1 6.2368 -5.4500 5.1304 40 1 5.7273 -4.2321 3.0591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271812639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:12 Heat of formation + Delta-G solvation = -126.752930 kcal Electronic energy + Delta-G solvation = -22277.894873 eV Core-core repulsion = 18828.835310 eV Total energy + Delta-G solvation = -3449.059564 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.21490 -40.52875 -39.47118 -37.98190 -36.63196 -35.71006 -32.65937 -31.27345 -29.37903 -28.40701 -28.27775 -27.29141 -25.49469 -23.10567 -22.97222 -21.88749 -20.23671 -19.30552 -19.00920 -18.03650 -17.75775 -17.21895 -16.84881 -16.23375 -16.10227 -15.71974 -15.43298 -14.84816 -14.64532 -14.51840 -14.19561 -13.90476 -13.82721 -13.57564 -13.48196 -13.10016 -13.08129 -12.91265 -12.81679 -12.71560 -12.63417 -12.57023 -12.12545 -11.98721 -11.82359 -11.77544 -11.56972 -11.33050 -11.10535 -10.80127 -9.47828 -9.37106 -8.71558 -6.43233 -0.41808 0.61549 1.07289 1.28582 1.37702 1.51344 1.52700 1.57895 2.17661 2.61945 3.13460 3.37431 3.70823 3.78396 3.81844 3.99261 4.05910 4.18639 4.38949 4.43316 4.50452 4.66090 4.71405 4.82293 4.90300 4.90559 4.95104 4.96800 5.08544 5.09566 5.21643 5.26631 5.30079 5.34600 5.36759 5.61359 5.67321 5.83809 6.02110 6.09561 6.28260 6.44515 6.60778 6.85023 6.93492 8.25121 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.002950 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.334042 B = 9489.828626 C = 9779.452107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.144 4.144 5 C 0.381 3.619 6 O -0.416 6.416 7 C 0.414 3.586 8 O -0.477 6.477 9 O -0.353 6.353 10 C 0.135 3.865 11 C -0.237 4.237 12 C -0.081 4.081 13 C -0.194 4.194 14 C 0.088 3.912 15 C -0.491 4.491 16 H 0.081 0.919 17 C 0.034 3.966 18 N -0.818 5.818 19 Si 0.987 3.013 20 H -0.260 1.260 21 H -0.268 1.268 22 H -0.256 1.256 23 C -0.246 4.246 24 C -0.065 4.065 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.291 0.709 39 H 0.104 0.896 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 7.133 -15.528 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 C -0.202 4.202 4 C -0.201 4.201 5 C 0.250 3.750 6 O -0.285 6.285 7 C 0.254 3.746 8 O -0.365 6.365 9 O -0.270 6.270 10 C 0.064 3.936 11 C -0.238 4.238 12 C -0.099 4.099 13 C -0.214 4.214 14 C 0.085 3.915 15 C -0.520 4.520 16 H 0.099 0.901 17 C -0.183 4.183 18 N -0.443 5.443 19 Si 0.807 3.193 20 H -0.185 1.185 21 H -0.192 1.192 22 H -0.180 1.180 23 C -0.265 4.265 24 C -0.083 4.083 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.509 7.144 -15.135 17.957 hybrid contribution 0.539 -0.364 1.127 1.301 sum -5.970 6.780 -14.008 16.668 Atomic orbital electron populations 1.21836 0.90244 1.03154 1.03934 1.21135 0.98616 0.97545 0.91302 1.21977 1.02270 0.91606 1.04302 1.21973 1.02278 1.00352 0.95492 1.25036 0.84631 0.77071 0.88227 1.90470 1.57679 1.35890 1.44442 1.24983 0.93427 0.76231 0.79916 1.90709 1.57955 1.43339 1.44515 1.86882 1.29616 1.68433 1.42025 1.21800 0.75235 1.00483 0.96097 1.19012 1.16872 0.94009 0.93915 1.20800 0.98254 0.98385 0.92480 1.21279 1.08559 0.94648 0.96898 1.18064 0.87670 0.92509 0.93244 1.19957 1.35281 1.05588 0.91171 0.90066 1.26874 0.92939 0.93952 1.04487 1.69882 1.23192 1.21659 1.29600 0.85123 0.78805 0.79867 0.75456 1.18479 1.19203 1.17996 1.21183 1.13287 0.98408 0.93639 1.20730 0.96993 0.93318 0.97270 0.92465 0.88088 0.92351 0.91702 0.87865 0.92334 0.92199 0.87895 0.91678 0.89802 0.90325 0.87515 0.87700 0.89820 0.87819 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.76 71.98 0.56 -1.43 16 2 C -0.09 -1.53 0.76 -52.93 -0.04 -1.57 16 3 C -0.14 -2.21 8.29 71.98 0.60 -1.62 16 4 C -0.14 -2.15 8.29 71.98 0.60 -1.56 16 5 C 0.38 10.39 6.03 28.59 0.17 10.56 16 6 O -0.42 -13.76 16.58 11.49 0.19 -13.57 16 7 C 0.41 13.01 7.69 70.73 0.54 13.55 16 8 O -0.48 -14.39 13.17 20.55 0.27 -14.12 16 9 O -0.35 -13.44 10.06 -50.03 -0.50 -13.95 16 10 C 0.14 4.94 5.59 71.24 0.40 5.34 16 11 C -0.24 -10.47 5.54 -19.68 -0.11 -10.58 16 12 C -0.08 -3.85 9.67 22.22 0.21 -3.64 16 13 C -0.19 -10.42 8.70 22.73 0.20 -10.22 16 14 C 0.09 4.80 5.58 -21.29 -0.12 4.68 16 15 C -0.49 -26.47 9.05 23.46 0.21 -26.26 16 16 H 0.08 4.18 7.91 -2.91 -0.02 4.16 16 17 C 0.03 1.68 5.14 85.26 0.44 2.12 16 18 N -0.82 -42.98 10.95 21.83 0.24 -42.74 16 19 Si 0.99 37.75 29.59 68.60 2.03 39.78 16 20 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 21 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 23 C -0.25 -12.23 9.80 22.73 0.22 -12.01 16 24 C -0.06 -2.91 9.67 22.22 0.21 -2.70 16 25 H 0.06 0.94 8.10 -2.38 -0.02 0.92 16 26 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 28 H 0.06 1.20 6.43 -2.38 -0.02 1.19 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.18 6.43 -2.39 -0.02 1.17 16 34 H 0.08 2.73 8.07 -2.39 -0.02 2.71 16 35 H 0.08 2.64 8.07 -2.39 -0.02 2.62 16 36 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 37 H 0.11 5.83 6.16 -2.91 -0.02 5.81 16 38 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 39 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 40 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -63.19 341.68 7.36 -55.83 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 1.04 Total: 24.10 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 4.10 Total: -35.33 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.24 Total: -42.74 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -0.04 Total: -41.64 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -63.19 7.36 -55.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271812639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.926 kcal (2) G-P(sol) polarization free energy of solvation -63.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds