Wall clock time and date at job start Tue Mar 31 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 110.66935 * 2 1 4 4 C 1.54887 * 110.75633 * 236.76244 * 2 1 3 5 5 C 1.54261 * 104.19475 * 203.55782 * 4 2 1 6 6 C 1.53866 * 106.60063 * 23.61438 * 5 4 2 7 7 H 1.09007 * 110.03552 * 240.71563 * 6 5 4 8 8 O 1.45197 * 110.03808 * 119.33080 * 6 5 4 9 9 C 1.34753 * 116.99940 * 92.08852 * 8 6 5 10 10 O 1.21513 * 120.00483 * 0.02562 * 9 8 6 11 11 C 1.47397 * 120.00069 * 180.02562 * 9 8 6 12 12 C 1.39732 * 120.20472 * 359.72739 * 11 9 8 13 13 C 1.37801 * 119.91706 * 179.70214 * 12 11 9 14 14 C 1.38596 * 120.32652 * 0.59491 * 13 12 11 15 15 C 1.38024 * 120.41459 * 359.68151 * 14 13 12 16 16 C 1.38825 * 120.07695 * 0.02562 * 15 14 13 17 17 O 1.35511 * 120.16014 * 179.97438 * 16 15 14 18 18 C 1.34808 * 117.00239 * 354.39914 * 17 16 15 19 19 H 1.08001 * 120.00262 * 5.06328 * 18 17 16 20 20 C 1.38699 * 119.99809 * 185.06752 * 18 17 16 21 21 N 1.31512 * 120.00334 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47168 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47130 * 119.99848 * 22 20 18 25 25 H 1.48493 * 109.47012 * 239.99579 * 22 20 18 26 26 C 1.54271 * 106.59759 * 359.97438 * 6 5 4 27 27 H 1.09002 * 109.46985 * 181.77910 * 1 2 3 28 28 H 1.09003 * 109.47206 * 301.78241 * 1 2 3 29 29 H 1.08999 * 109.47212 * 61.78193 * 1 2 3 30 30 H 1.09004 * 110.48488 * 84.87969 * 4 2 1 31 31 H 1.09005 * 110.48658 * 322.24187 * 4 2 1 32 32 H 1.09001 * 110.03446 * 264.32540 * 5 4 2 33 33 H 1.09005 * 110.02839 * 142.89779 * 5 4 2 34 34 H 1.08006 * 120.03831 * 359.97438 * 12 11 9 35 35 H 1.07997 * 119.83811 * 180.27730 * 13 12 11 36 36 H 1.07997 * 119.78953 * 179.70014 * 14 13 12 37 37 H 1.08004 * 119.95576 * 179.97438 * 15 14 13 38 38 H 0.97002 * 120.00267 * 180.02562 * 21 20 18 39 39 H 1.09009 * 110.48228 * 95.07303 * 26 6 5 40 40 H 1.08995 * 110.48958 * 217.71306 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0790 -0.7939 -1.2114 5 6 3.4950 -1.2214 -0.7733 6 6 3.4975 -1.2224 0.7654 7 1 4.2358 -0.5123 1.1381 8 8 3.7943 -2.5543 1.2615 9 6 5.0875 -2.8405 1.5099 10 8 5.9436 -1.9999 1.3177 11 6 5.4635 -4.1732 2.0149 12 6 4.4819 -5.1412 2.2430 13 6 4.8408 -6.3873 2.7093 14 6 6.1705 -6.6824 2.9655 15 6 7.1506 -5.7346 2.7505 16 6 6.8088 -4.4758 2.2753 17 8 7.7696 -3.5438 2.0641 18 6 9.0237 -3.8607 2.4438 19 1 9.2409 -4.8502 2.8179 20 6 10.0350 -2.9157 2.3541 21 7 9.7707 -1.7108 1.8982 22 14 11.7727 -3.3545 2.8810 23 1 11.8061 -4.7619 3.3537 24 1 12.6943 -3.1974 1.7273 25 1 12.1988 -2.4530 3.9813 26 6 2.0831 -0.7947 1.2087 27 1 -0.3633 -1.0272 0.0319 28 1 -0.3634 0.5413 0.8736 29 1 -0.3633 0.4859 -0.9055 30 1 2.1290 -0.1564 -2.0942 31 1 1.4593 -1.6692 -1.4064 32 1 4.2321 -0.5109 -1.1475 33 1 3.7157 -2.2210 -1.1477 34 1 3.4438 -4.9145 2.0498 35 1 4.0816 -7.1359 2.8809 36 1 6.4415 -7.6602 3.3354 37 1 8.1845 -5.9724 2.9530 38 1 10.4781 -1.0501 1.8351 39 1 1.4638 -1.6702 1.4046 40 1 2.1362 -0.1584 2.0920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272343329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:57 Heat of formation + Delta-G solvation = -102.103060 kcal Electronic energy + Delta-G solvation = -22932.100211 eV Core-core repulsion = 19484.109546 eV Total energy + Delta-G solvation = -3447.990665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97741 -38.94976 -37.59976 -36.40175 -35.12038 -32.41203 -31.09393 -30.39143 -28.97639 -28.47886 -25.51756 -24.96886 -23.46392 -21.70730 -20.68236 -20.11848 -19.54437 -18.06882 -17.55170 -16.67706 -15.98270 -15.81966 -14.80916 -14.72112 -14.44195 -14.31637 -13.81353 -13.69393 -13.57874 -13.34896 -13.25782 -12.72965 -12.49464 -12.09170 -11.87756 -11.76134 -11.52451 -11.34379 -11.12175 -10.99718 -10.94598 -10.82821 -10.77086 -10.60138 -10.48142 -10.30942 -9.91620 -9.70984 -9.21376 -8.93978 -8.32379 -7.38073 -6.51314 -4.11180 1.61287 2.30531 3.08487 3.09571 3.15316 3.33902 3.48509 3.88480 4.47726 4.56710 4.59419 4.79800 5.01325 5.13773 5.23179 5.31361 5.38057 5.45456 5.51022 5.54764 5.56260 5.64306 5.73698 5.75898 5.87421 5.90008 6.02222 6.03883 6.04821 6.13458 6.24194 6.34331 6.36734 6.58451 6.66649 6.90580 7.03992 7.15248 7.23532 7.33354 7.65756 7.87266 8.77606 8.89133 9.58519 10.62510 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.004351 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.381075 B = 6433.821659 C = 7762.047630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.078 0.922 4 C -0.116 4.116 5 C -0.140 4.140 6 C 0.085 3.915 7 H 0.086 0.914 8 O -0.360 6.360 9 C 0.496 3.504 10 O -0.477 6.477 11 C -0.216 4.216 12 C -0.016 4.016 13 C -0.235 4.235 14 C -0.044 4.044 15 C -0.240 4.240 16 C 0.191 3.809 17 O -0.126 6.126 18 C -0.403 4.403 19 H 0.097 0.903 20 C 0.045 3.955 21 N -0.832 5.832 22 Si 0.943 3.057 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.115 4.115 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.272 0.728 39 H 0.081 0.919 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.663 -1.142 -1.974 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.096 0.904 4 C -0.154 4.154 5 C -0.178 4.178 6 C 0.030 3.970 7 H 0.104 0.896 8 O -0.280 6.280 9 C 0.341 3.659 10 O -0.363 6.363 11 C -0.219 4.219 12 C -0.034 4.034 13 C -0.254 4.254 14 C -0.063 4.063 15 C -0.259 4.259 16 C 0.132 3.868 17 O -0.024 6.024 18 C -0.479 4.479 19 H 0.114 0.886 20 C -0.163 4.163 21 N -0.463 5.463 22 Si 0.767 3.233 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.152 4.152 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.152 0.848 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.241 -0.351 -2.204 13.428 hybrid contribution 1.021 -0.204 0.248 1.070 sum -12.220 -0.555 -1.956 12.388 Atomic orbital electron populations 1.21741 0.94668 1.01945 1.01528 1.22069 0.95560 0.99216 0.94770 0.90399 1.22395 0.95821 0.99697 0.97443 1.22552 0.97467 1.02866 0.94935 1.23235 0.97235 0.83003 0.93549 0.89613 1.86598 1.29343 1.34219 1.77793 1.21104 0.80234 0.88593 0.75966 1.90984 1.49466 1.48092 1.47772 1.18069 0.91481 0.93133 1.19218 1.20962 0.97709 0.91911 0.92846 1.20540 0.95975 0.97502 1.11367 1.20965 0.92837 0.97683 0.94778 1.21113 1.00596 0.93863 1.10290 1.19241 0.88036 0.88979 0.90574 1.84146 1.15879 1.36307 1.66036 1.21580 0.81899 0.99859 1.44530 0.88610 1.25414 0.99988 0.94594 0.96331 1.70126 1.33710 1.03328 1.39159 0.85631 0.80125 0.78987 0.78586 1.18885 1.19949 1.19946 1.22505 0.94536 1.00184 0.97974 0.92466 0.92662 0.92650 0.91602 0.91313 0.90822 0.90715 0.85800 0.87004 0.86978 0.84844 0.91796 0.90043 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.28 37.16 0.34 -0.84 16 2 C -0.10 -1.01 3.48 -88.64 -0.31 -1.31 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.12 -1.28 6.27 -25.08 -0.16 -1.43 16 5 C -0.14 -2.04 6.62 -25.62 -0.17 -2.21 16 6 C 0.09 1.39 3.24 -25.61 -0.08 1.30 16 7 H 0.09 1.57 7.17 -51.92 -0.37 1.20 16 8 O -0.36 -6.87 9.05 -40.64 -0.37 -7.24 16 9 C 0.50 11.52 7.89 34.46 0.27 11.79 16 10 O -0.48 -13.06 14.43 -26.59 -0.38 -13.44 16 11 C -0.22 -4.91 5.89 -104.83 -0.62 -5.53 16 12 C -0.02 -0.29 9.61 -39.18 -0.38 -0.67 16 13 C -0.23 -3.97 10.02 -39.61 -0.40 -4.36 16 14 C -0.04 -0.78 10.03 -39.53 -0.40 -1.18 16 15 C -0.24 -5.13 9.16 -39.44 -0.36 -5.50 16 16 C 0.19 4.78 6.66 -38.58 -0.26 4.52 16 17 O -0.13 -3.69 7.84 -21.02 -0.16 -3.86 16 18 C -0.40 -11.30 9.49 30.90 0.29 -11.01 16 19 H 0.10 2.43 5.21 -52.49 -0.27 2.16 16 20 C 0.04 1.23 5.49 -17.52 -0.10 1.14 16 21 N -0.83 -24.81 13.67 55.48 0.76 -24.05 16 22 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 23 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.11 -1.42 6.02 -25.08 -0.15 -1.57 16 27 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.16 7.96 -51.93 -0.41 0.75 16 34 H 0.12 1.97 7.61 -52.48 -0.40 1.57 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 37 H 0.13 2.79 5.64 -52.48 -0.30 2.50 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.08 0.98 7.98 -51.92 -0.41 0.57 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -32.71 336.04 -8.10 -40.82 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.53 Total: 4.30 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -2.46 Total: -16.86 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.76 Total: -24.05 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.92 Total: -24.54 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.71 -8.10 -40.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272343329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.287 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds