Wall clock time and date at job start Tue Mar 31 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 110.66935 * 2 1 4 4 C 1.54887 * 110.75633 * 236.76244 * 2 1 3 5 5 C 1.54261 * 104.19475 * 203.55782 * 4 2 1 6 6 C 1.53866 * 106.60063 * 23.61438 * 5 4 2 7 7 H 1.09007 * 110.03552 * 240.71563 * 6 5 4 8 8 O 1.45197 * 110.03808 * 119.33080 * 6 5 4 9 9 C 1.34753 * 116.99940 * 92.08852 * 8 6 5 10 10 O 1.21513 * 120.00483 * 0.02562 * 9 8 6 11 11 C 1.47397 * 120.00069 * 180.02562 * 9 8 6 12 12 C 1.39732 * 120.20472 * 359.72739 * 11 9 8 13 13 C 1.37801 * 119.91706 * 179.70214 * 12 11 9 14 14 C 1.38596 * 120.32652 * 0.59491 * 13 12 11 15 15 C 1.38024 * 120.41459 * 359.68151 * 14 13 12 16 16 C 1.38825 * 120.07695 * 0.02562 * 15 14 13 17 17 O 1.35511 * 120.16014 * 179.97438 * 16 15 14 18 18 C 1.34808 * 117.00239 * 354.39914 * 17 16 15 19 19 H 1.08001 * 120.00262 * 5.06328 * 18 17 16 20 20 C 1.38699 * 119.99809 * 185.06752 * 18 17 16 21 21 N 1.31512 * 120.00334 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47168 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47130 * 119.99848 * 22 20 18 25 25 H 1.48493 * 109.47012 * 239.99579 * 22 20 18 26 26 C 1.54271 * 106.59759 * 359.97438 * 6 5 4 27 27 H 1.09002 * 109.46985 * 181.77910 * 1 2 3 28 28 H 1.09003 * 109.47206 * 301.78241 * 1 2 3 29 29 H 1.08999 * 109.47212 * 61.78193 * 1 2 3 30 30 H 1.09004 * 110.48488 * 84.87969 * 4 2 1 31 31 H 1.09005 * 110.48658 * 322.24187 * 4 2 1 32 32 H 1.09001 * 110.03446 * 264.32540 * 5 4 2 33 33 H 1.09005 * 110.02839 * 142.89779 * 5 4 2 34 34 H 1.08006 * 120.03831 * 359.97438 * 12 11 9 35 35 H 1.07997 * 119.83811 * 180.27730 * 13 12 11 36 36 H 1.07997 * 119.78953 * 179.70014 * 14 13 12 37 37 H 1.08004 * 119.95576 * 179.97438 * 15 14 13 38 38 H 0.97002 * 120.00267 * 180.02562 * 21 20 18 39 39 H 1.09009 * 110.48228 * 95.07303 * 26 6 5 40 40 H 1.08995 * 110.48958 * 217.71306 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0790 -0.7939 -1.2114 5 6 3.4950 -1.2214 -0.7733 6 6 3.4975 -1.2224 0.7654 7 1 4.2358 -0.5123 1.1381 8 8 3.7943 -2.5543 1.2615 9 6 5.0875 -2.8405 1.5099 10 8 5.9436 -1.9999 1.3177 11 6 5.4635 -4.1732 2.0149 12 6 4.4819 -5.1412 2.2430 13 6 4.8408 -6.3873 2.7093 14 6 6.1705 -6.6824 2.9655 15 6 7.1506 -5.7346 2.7505 16 6 6.8088 -4.4758 2.2753 17 8 7.7696 -3.5438 2.0641 18 6 9.0237 -3.8607 2.4438 19 1 9.2409 -4.8502 2.8179 20 6 10.0350 -2.9157 2.3541 21 7 9.7707 -1.7108 1.8982 22 14 11.7727 -3.3545 2.8810 23 1 11.8061 -4.7619 3.3537 24 1 12.6943 -3.1974 1.7273 25 1 12.1988 -2.4530 3.9813 26 6 2.0831 -0.7947 1.2087 27 1 -0.3633 -1.0272 0.0319 28 1 -0.3634 0.5413 0.8736 29 1 -0.3633 0.4859 -0.9055 30 1 2.1290 -0.1564 -2.0942 31 1 1.4593 -1.6692 -1.4064 32 1 4.2321 -0.5109 -1.1475 33 1 3.7157 -2.2210 -1.1477 34 1 3.4438 -4.9145 2.0498 35 1 4.0816 -7.1359 2.8809 36 1 6.4415 -7.6602 3.3354 37 1 8.1845 -5.9724 2.9530 38 1 10.4781 -1.0501 1.8351 39 1 1.4638 -1.6702 1.4046 40 1 2.1362 -0.1584 2.0920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272343329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:56 Heat of formation + Delta-G solvation = -120.754166 kcal Electronic energy + Delta-G solvation = -22932.908983 eV Core-core repulsion = 19484.109546 eV Total energy + Delta-G solvation = -3448.799438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66347 -40.58674 -38.97091 -38.12294 -36.76599 -34.38875 -32.49669 -31.61096 -30.65400 -29.59563 -27.47885 -26.04367 -24.99675 -23.39598 -22.20244 -21.21498 -20.82813 -19.92183 -19.27433 -18.39647 -17.46993 -17.23646 -16.40846 -16.36901 -16.16093 -15.75822 -15.46976 -15.34051 -14.83466 -14.67173 -14.41902 -14.10744 -13.79205 -13.58884 -13.46002 -13.14593 -13.01670 -12.72828 -12.58550 -12.51642 -12.37302 -12.10458 -11.94488 -11.76391 -11.61617 -11.50978 -11.47382 -11.33509 -11.03168 -10.88538 -9.94011 -9.13483 -8.50038 -6.21484 -0.05598 0.67421 1.32083 1.42612 1.52243 1.73707 1.75591 2.12866 2.80617 3.13170 3.35921 3.46780 3.51712 3.77081 3.91808 4.07685 4.17910 4.26386 4.30176 4.39512 4.46311 4.50476 4.58618 4.61969 4.69529 4.79559 4.88064 4.99762 5.00941 5.01847 5.05569 5.09564 5.12365 5.25365 5.35306 5.46300 5.49741 5.52991 5.62655 5.65059 5.91811 6.11164 6.88760 7.00328 7.70321 8.70468 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.004351 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.381075 B = 6433.821659 C = 7762.047630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 H 0.080 0.920 4 C -0.106 4.106 5 C -0.142 4.142 6 C 0.071 3.929 7 H 0.053 0.947 8 O -0.347 6.347 9 C 0.496 3.504 10 O -0.532 6.532 11 C -0.240 4.240 12 C -0.012 4.012 13 C -0.203 4.203 14 C -0.027 4.027 15 C -0.256 4.256 16 C 0.157 3.843 17 O -0.189 6.189 18 C -0.428 4.428 19 H 0.112 0.888 20 C -0.021 4.021 21 N -0.904 5.904 22 Si 1.025 2.975 23 H -0.243 1.243 24 H -0.268 1.268 25 H -0.269 1.269 26 C -0.107 4.107 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.131 0.869 38 H 0.272 0.728 39 H 0.092 0.908 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.639 -4.214 -1.268 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 H 0.098 0.902 4 C -0.144 4.144 5 C -0.180 4.180 6 C 0.016 3.984 7 H 0.071 0.929 8 O -0.265 6.265 9 C 0.343 3.657 10 O -0.423 6.423 11 C -0.242 4.242 12 C -0.030 4.030 13 C -0.221 4.221 14 C -0.045 4.045 15 C -0.275 4.275 16 C 0.102 3.898 17 O -0.091 6.091 18 C -0.504 4.504 19 H 0.129 0.871 20 C -0.220 4.220 21 N -0.540 5.540 22 Si 0.843 3.157 23 H -0.166 1.166 24 H -0.193 1.193 25 H -0.194 1.194 26 C -0.144 4.144 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.173 0.827 35 H 0.184 0.816 36 H 0.179 0.821 37 H 0.149 0.851 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.301 -3.487 -1.489 16.736 hybrid contribution 1.548 0.525 0.044 1.635 sum -14.754 -2.962 -1.445 15.117 Atomic orbital electron populations 1.21710 0.92387 1.02613 1.02657 1.22082 0.97259 0.98741 0.92922 0.90159 1.22386 0.93009 1.00604 0.98354 1.22562 1.00077 1.01825 0.93574 1.23653 0.98909 0.80913 0.94911 0.92895 1.86567 1.26836 1.35822 1.77287 1.21455 0.80829 0.88574 0.74827 1.90969 1.51249 1.49831 1.50208 1.18537 0.91918 0.93979 1.19788 1.21389 0.98161 0.91645 0.91855 1.21228 0.96800 0.97280 1.06827 1.21542 0.92295 0.98515 0.92135 1.21298 1.01836 0.93445 1.10969 1.19987 0.88520 0.90024 0.91307 1.84151 1.16865 1.38610 1.69475 1.22149 0.82317 1.00819 1.45086 0.87073 1.26809 1.04967 0.94174 0.96067 1.70313 1.35380 1.05201 1.43083 0.84468 0.73393 0.79670 0.78204 1.16588 1.19346 1.19394 1.22553 0.91613 1.00948 0.99287 0.91998 0.91858 0.91298 0.89897 0.90036 0.92130 0.92179 0.82684 0.81570 0.82082 0.85122 0.91864 0.88951 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.28 71.99 0.67 -1.16 16 2 C -0.09 -1.71 3.48 -9.51 -0.03 -1.74 16 3 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.11 -2.17 6.27 31.67 0.20 -1.97 16 5 C -0.14 -4.30 6.62 31.31 0.21 -4.10 16 6 C 0.07 2.42 3.24 31.32 0.10 2.52 16 7 H 0.05 2.14 7.17 -2.38 -0.02 2.12 16 8 O -0.35 -13.58 9.05 -56.64 -0.51 -14.10 16 9 C 0.50 24.39 7.89 70.23 0.55 24.94 16 10 O -0.53 -31.95 14.43 26.79 0.39 -31.57 16 11 C -0.24 -11.08 5.89 -20.00 -0.12 -11.19 16 12 C -0.01 -0.42 9.61 22.53 0.22 -0.21 16 13 C -0.20 -5.68 10.02 22.25 0.22 -5.46 16 14 C -0.03 -0.83 10.03 22.30 0.22 -0.61 16 15 C -0.26 -10.83 9.16 22.36 0.20 -10.63 16 16 C 0.16 8.16 6.66 22.92 0.15 8.31 16 17 O -0.19 -11.98 7.84 1.00 0.01 -11.97 16 18 C -0.43 -25.59 9.49 67.93 0.64 -24.94 16 19 H 0.11 5.90 5.21 -2.91 -0.02 5.88 16 20 C -0.02 -1.21 5.49 84.85 0.47 -0.74 16 21 N -0.90 -58.54 13.67 21.62 0.30 -58.25 16 22 Si 1.02 43.51 29.55 68.60 2.03 45.54 16 23 H -0.24 -9.26 7.11 99.48 0.71 -8.55 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 C -0.11 -2.53 6.02 31.66 0.19 -2.34 16 27 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.08 1.49 8.05 -2.38 -0.02 1.47 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.96 7.96 -2.38 -0.02 1.94 16 34 H 0.16 4.27 7.61 -2.91 -0.02 4.25 16 35 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.13 5.49 5.64 -2.91 -0.02 5.47 16 38 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 39 H 0.09 2.01 7.98 -2.38 -0.02 1.99 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -82.16 336.04 7.14 -75.01 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 1.04 Total: 24.64 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 3.90 Total: -29.31 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.30 Total: -58.25 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: -0.12 Total: -57.64 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -82.16 7.14 -75.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272343329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.741 kcal (2) G-P(sol) polarization free energy of solvation -82.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds