Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.54071 * 2 1 4 4 C 1.54468 * 110.65669 * 122.62474 * 2 1 3 5 5 C 1.53874 * 106.68294 * 142.05376 * 4 2 1 6 6 C 1.54265 * 106.59977 * 0.15688 * 5 4 2 7 7 H 1.09002 * 110.48662 * 95.06839 * 6 5 4 8 8 O 1.45207 * 110.59858 * 217.65847 * 6 5 4 9 9 C 1.34763 * 116.99673 * 264.83975 * 8 6 5 10 10 O 1.21509 * 120.00093 * 359.97438 * 9 8 6 11 11 C 1.47390 * 119.99759 * 180.02562 * 9 8 6 12 12 C 1.39730 * 120.20434 * 359.97438 * 11 9 8 13 13 C 1.37804 * 119.91600 * 179.97438 * 12 11 9 14 14 C 1.38590 * 120.33080 * 359.97438 * 13 12 11 15 15 C 1.38027 * 120.41216 * 0.02562 * 14 13 12 16 16 C 1.38832 * 120.07784 * 359.74744 * 15 14 13 17 17 O 1.35503 * 120.16534 * 180.28020 * 16 15 14 18 18 C 1.34822 * 116.99960 * 354.39413 * 17 16 15 19 19 H 1.08001 * 119.99687 * 5.07547 * 18 17 16 20 20 C 1.38701 * 119.99926 * 185.06794 * 18 17 16 21 21 N 1.31516 * 119.99877 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99941 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47134 * 89.99807 * 22 20 18 24 24 H 1.48500 * 109.46722 * 210.00095 * 22 20 18 25 25 H 1.48499 * 109.46979 * 329.99836 * 22 20 18 26 26 C 1.54886 * 104.19537 * 336.38947 * 6 5 4 27 27 H 1.08998 * 109.46844 * 182.61675 * 1 2 3 28 28 H 1.08998 * 109.46693 * 302.61420 * 1 2 3 29 29 H 1.08997 * 109.46690 * 62.61483 * 1 2 3 30 30 H 1.08993 * 109.86134 * 22.81437 * 4 2 1 31 31 H 1.08998 * 110.12311 * 261.43612 * 4 2 1 32 32 H 1.09002 * 110.03194 * 240.86784 * 5 4 2 33 33 H 1.09001 * 110.03714 * 119.44224 * 5 4 2 34 34 H 1.08002 * 120.04140 * 0.02562 * 12 11 9 35 35 H 1.08005 * 119.83478 * 180.02562 * 13 12 11 36 36 H 1.07997 * 119.79084 * 180.02562 * 14 13 12 37 37 H 1.08005 * 119.95412 * 179.97438 * 15 14 13 38 38 H 0.97000 * 119.99537 * 180.02562 * 21 20 18 39 39 H 1.09002 * 110.75628 * 156.25854 * 26 6 5 40 40 H 1.09004 * 110.76125 * 279.44550 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0750 -0.7793 1.2173 5 6 3.3184 -1.5444 0.7314 6 6 3.4905 -1.2021 -0.7629 7 1 4.1917 -0.3769 -0.8869 8 8 3.9410 -2.3661 -1.5050 9 6 5.2679 -2.4872 -1.7065 10 8 6.0276 -1.6431 -1.2743 11 6 5.7976 -3.6431 -2.4521 12 6 4.9278 -4.6160 -2.9514 13 6 5.4294 -5.6939 -3.6481 14 6 6.7937 -5.8186 -3.8573 15 6 7.6652 -4.8656 -3.3701 16 6 7.1780 -3.7702 -2.6699 17 8 8.0315 -2.8307 -2.1957 18 6 9.3500 -3.0752 -2.3353 19 1 9.6829 -3.9465 -2.8799 20 6 10.2788 -2.2078 -1.7797 21 7 9.8734 -1.1471 -1.1163 22 14 12.1057 -2.5462 -1.9738 23 1 12.6020 -1.8903 -3.2100 24 1 12.8365 -2.0064 -0.7992 25 1 12.3306 -4.0112 -2.0662 26 6 2.0722 -0.7821 -1.2221 27 1 -0.3633 -1.0266 0.0469 28 1 -0.3633 0.5539 0.8656 29 1 -0.3632 0.4727 -0.9125 30 1 1.3214 -1.4805 1.5756 31 1 2.3499 -0.0871 2.0132 32 1 3.1683 -2.6171 0.8540 33 1 4.1968 -1.2236 1.2915 34 1 3.8636 -4.5228 -2.7922 35 1 4.7558 -6.4450 -4.0338 36 1 7.1773 -6.6667 -4.4048 37 1 8.7272 -4.9703 -3.5370 38 1 10.5230 -0.5403 -0.7281 39 1 2.1252 -0.1383 -2.1001 40 1 1.4561 -1.6584 -1.4241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272343331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = -101.919193 kcal Electronic energy + Delta-G solvation = -22900.817333 eV Core-core repulsion = 19452.834641 eV Total energy + Delta-G solvation = -3447.982692 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.95390 -38.93644 -37.63246 -36.40248 -35.15057 -32.41207 -31.09703 -30.40210 -28.97589 -28.46962 -25.51708 -24.95526 -23.44568 -21.69795 -20.65091 -20.24071 -19.49670 -18.06936 -17.56194 -16.66116 -15.96952 -15.80585 -14.88097 -14.71073 -14.45538 -14.26021 -13.82846 -13.64324 -13.55376 -13.41284 -13.26264 -12.76893 -12.56532 -12.05315 -11.82943 -11.76013 -11.61557 -11.33146 -11.12194 -10.97079 -10.93648 -10.84204 -10.78129 -10.63016 -10.49518 -10.28334 -9.88952 -9.71041 -9.22028 -8.93477 -8.32440 -7.38123 -6.51203 -4.11166 1.61158 2.30622 3.08554 3.09870 3.14577 3.32332 3.48050 3.88643 4.48236 4.56437 4.60235 4.78776 5.01502 5.13658 5.23979 5.27882 5.38049 5.41213 5.50091 5.52560 5.56267 5.65302 5.74489 5.77536 5.86272 5.89950 6.01702 6.04402 6.05469 6.13497 6.23892 6.33313 6.37288 6.58341 6.66514 6.90290 7.03779 7.14795 7.23371 7.32980 7.65729 7.87263 8.77028 8.89077 9.58349 10.62533 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.004383 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.322339 B = 6386.587127 C = 7793.694879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.141 4.141 6 C 0.084 3.916 7 H 0.089 0.911 8 O -0.359 6.359 9 C 0.496 3.504 10 O -0.477 6.477 11 C -0.216 4.216 12 C -0.016 4.016 13 C -0.235 4.235 14 C -0.044 4.044 15 C -0.239 4.239 16 C 0.191 3.809 17 O -0.125 6.125 18 C -0.404 4.404 19 H 0.096 0.904 20 C 0.045 3.955 21 N -0.832 5.832 22 Si 0.943 3.057 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.265 1.265 26 C -0.114 4.114 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.272 0.728 39 H 0.071 0.929 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.483 -2.063 0.282 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.179 4.179 6 C 0.029 3.971 7 H 0.107 0.893 8 O -0.278 6.278 9 C 0.341 3.659 10 O -0.363 6.363 11 C -0.219 4.219 12 C -0.034 4.034 13 C -0.254 4.254 14 C -0.063 4.063 15 C -0.259 4.259 16 C 0.132 3.868 17 O -0.023 6.023 18 C -0.479 4.479 19 H 0.113 0.887 20 C -0.163 4.163 21 N -0.463 5.463 22 Si 0.767 3.233 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.190 1.190 26 C -0.152 4.152 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.152 0.848 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.158 -1.304 0.712 13.241 hybrid contribution 1.043 -0.154 -0.075 1.056 sum -12.115 -1.458 0.637 12.219 Atomic orbital electron populations 1.21777 0.94617 1.01889 1.01582 1.21940 0.95666 0.99364 0.94630 0.90465 1.22177 0.96899 0.98765 0.97456 1.22522 0.98575 1.01426 0.95399 1.23452 0.95660 0.87647 0.90382 0.89251 1.86579 1.26180 1.45538 1.69480 1.21112 0.80017 0.86208 0.78515 1.90983 1.57353 1.40977 1.47005 1.18061 0.91042 0.98949 1.13845 1.20962 0.98343 0.91591 0.92523 1.20540 0.95178 1.00952 1.08714 1.20965 0.93283 0.96680 0.95331 1.21113 1.00848 0.97139 1.06754 1.19238 0.89010 0.87966 0.90627 1.84147 1.16550 1.36562 1.65077 1.21535 0.78239 1.11684 1.36453 0.88659 1.25413 1.00460 0.95041 0.95395 1.70120 1.35267 1.11070 1.29863 0.85696 0.80118 0.79119 0.78416 1.19670 1.20070 1.18973 1.22626 0.94469 1.00250 0.97812 0.92484 0.92672 0.92597 0.91487 0.91655 0.90728 0.90961 0.85791 0.86999 0.86973 0.84847 0.91745 0.90982 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.15 37.16 0.34 -0.84 16 2 C -0.10 -1.02 3.47 -88.85 -0.31 -1.32 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.12 -1.27 6.39 -25.51 -0.16 -1.44 16 5 C -0.14 -2.05 6.57 -25.61 -0.17 -2.22 16 6 C 0.08 1.37 3.23 -25.07 -0.08 1.29 16 7 H 0.09 1.64 7.14 -51.93 -0.37 1.27 16 8 O -0.36 -6.85 9.21 -40.66 -0.37 -7.23 16 9 C 0.50 11.54 7.89 34.46 0.27 11.81 16 10 O -0.48 -13.07 14.42 -26.59 -0.38 -13.45 16 11 C -0.22 -4.91 5.89 -104.83 -0.62 -5.53 16 12 C -0.02 -0.29 9.61 -39.18 -0.38 -0.67 16 13 C -0.23 -3.96 10.02 -39.61 -0.40 -4.36 16 14 C -0.04 -0.78 10.03 -39.53 -0.40 -1.18 16 15 C -0.24 -5.13 9.16 -39.44 -0.36 -5.49 16 16 C 0.19 4.78 6.66 -38.58 -0.26 4.52 16 17 O -0.13 -3.68 7.84 -21.03 -0.16 -3.85 16 18 C -0.40 -11.31 9.49 30.90 0.29 -11.02 16 19 H 0.10 2.41 5.21 -52.49 -0.27 2.14 16 20 C 0.05 1.24 5.49 -17.52 -0.10 1.14 16 21 N -0.83 -24.80 13.67 55.48 0.76 -24.04 16 22 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 C -0.11 -1.41 6.04 -24.74 -0.15 -1.56 16 27 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.66 7.79 -51.93 -0.40 0.26 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.08 8.07 -51.93 -0.42 0.66 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.12 1.97 7.61 -52.49 -0.40 1.58 16 35 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.13 2.78 5.64 -52.48 -0.30 2.49 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -32.67 335.97 -8.11 -40.78 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.52 Total: 4.34 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -2.47 Total: -16.86 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.76 Total: -24.04 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.92 Total: -24.53 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.67 -8.11 -40.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272343331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.135 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds