Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.54071 * 2 1 4 4 C 1.54468 * 110.65669 * 122.62474 * 2 1 3 5 5 C 1.53874 * 106.68294 * 142.05376 * 4 2 1 6 6 C 1.54265 * 106.59977 * 0.15688 * 5 4 2 7 7 H 1.09002 * 110.48662 * 95.06839 * 6 5 4 8 8 O 1.45207 * 110.59858 * 217.65847 * 6 5 4 9 9 C 1.34763 * 116.99673 * 264.83975 * 8 6 5 10 10 O 1.21509 * 120.00093 * 359.97438 * 9 8 6 11 11 C 1.47390 * 119.99759 * 180.02562 * 9 8 6 12 12 C 1.39730 * 120.20434 * 359.97438 * 11 9 8 13 13 C 1.37804 * 119.91600 * 179.97438 * 12 11 9 14 14 C 1.38590 * 120.33080 * 359.97438 * 13 12 11 15 15 C 1.38027 * 120.41216 * 0.02562 * 14 13 12 16 16 C 1.38832 * 120.07784 * 359.74744 * 15 14 13 17 17 O 1.35503 * 120.16534 * 180.28020 * 16 15 14 18 18 C 1.34822 * 116.99960 * 354.39413 * 17 16 15 19 19 H 1.08001 * 119.99687 * 5.07547 * 18 17 16 20 20 C 1.38701 * 119.99926 * 185.06794 * 18 17 16 21 21 N 1.31516 * 119.99877 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99941 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47134 * 89.99807 * 22 20 18 24 24 H 1.48500 * 109.46722 * 210.00095 * 22 20 18 25 25 H 1.48499 * 109.46979 * 329.99836 * 22 20 18 26 26 C 1.54886 * 104.19537 * 336.38947 * 6 5 4 27 27 H 1.08998 * 109.46844 * 182.61675 * 1 2 3 28 28 H 1.08998 * 109.46693 * 302.61420 * 1 2 3 29 29 H 1.08997 * 109.46690 * 62.61483 * 1 2 3 30 30 H 1.08993 * 109.86134 * 22.81437 * 4 2 1 31 31 H 1.08998 * 110.12311 * 261.43612 * 4 2 1 32 32 H 1.09002 * 110.03194 * 240.86784 * 5 4 2 33 33 H 1.09001 * 110.03714 * 119.44224 * 5 4 2 34 34 H 1.08002 * 120.04140 * 0.02562 * 12 11 9 35 35 H 1.08005 * 119.83478 * 180.02562 * 13 12 11 36 36 H 1.07997 * 119.79084 * 180.02562 * 14 13 12 37 37 H 1.08005 * 119.95412 * 179.97438 * 15 14 13 38 38 H 0.97000 * 119.99537 * 180.02562 * 21 20 18 39 39 H 1.09002 * 110.75628 * 156.25854 * 26 6 5 40 40 H 1.09004 * 110.76125 * 279.44550 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0750 -0.7793 1.2173 5 6 3.3184 -1.5444 0.7314 6 6 3.4905 -1.2021 -0.7629 7 1 4.1917 -0.3769 -0.8869 8 8 3.9410 -2.3661 -1.5050 9 6 5.2679 -2.4872 -1.7065 10 8 6.0276 -1.6431 -1.2743 11 6 5.7976 -3.6431 -2.4521 12 6 4.9278 -4.6160 -2.9514 13 6 5.4294 -5.6939 -3.6481 14 6 6.7937 -5.8186 -3.8573 15 6 7.6652 -4.8656 -3.3701 16 6 7.1780 -3.7702 -2.6699 17 8 8.0315 -2.8307 -2.1957 18 6 9.3500 -3.0752 -2.3353 19 1 9.6829 -3.9465 -2.8799 20 6 10.2788 -2.2078 -1.7797 21 7 9.8734 -1.1471 -1.1163 22 14 12.1057 -2.5462 -1.9738 23 1 12.6020 -1.8903 -3.2100 24 1 12.8365 -2.0064 -0.7992 25 1 12.3306 -4.0112 -2.0662 26 6 2.0722 -0.7821 -1.2221 27 1 -0.3633 -1.0266 0.0469 28 1 -0.3633 0.5539 0.8656 29 1 -0.3632 0.4727 -0.9125 30 1 1.3214 -1.4805 1.5756 31 1 2.3499 -0.0871 2.0132 32 1 3.1683 -2.6171 0.8540 33 1 4.1968 -1.2236 1.2915 34 1 3.8636 -4.5228 -2.7922 35 1 4.7558 -6.4450 -4.0338 36 1 7.1773 -6.6667 -4.4048 37 1 8.7272 -4.9703 -3.5370 38 1 10.5230 -0.5403 -0.7281 39 1 2.1252 -0.1383 -2.1001 40 1 1.4561 -1.6584 -1.4241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272343331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = -120.569369 kcal Electronic energy + Delta-G solvation = -22901.626065 eV Core-core repulsion = 19452.834641 eV Total energy + Delta-G solvation = -3448.791424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.64696 -40.57050 -38.99091 -38.12312 -36.80711 -34.38817 -32.49804 -31.62346 -30.65252 -29.58497 -27.47665 -26.03899 -24.96422 -23.38546 -22.16652 -21.47069 -20.66528 -19.92174 -19.28291 -18.39451 -17.44412 -17.19316 -16.49144 -16.38700 -16.16874 -15.71194 -15.49768 -15.33280 -14.78143 -14.62746 -14.39795 -14.24857 -13.87316 -13.58656 -13.37925 -13.12884 -12.99221 -12.72917 -12.62110 -12.56522 -12.38575 -12.13904 -11.92583 -11.77594 -11.64637 -11.57709 -11.39638 -11.29060 -11.02854 -10.87313 -9.93959 -9.13426 -8.49864 -6.21440 -0.05660 0.67619 1.32026 1.43559 1.51431 1.73361 1.74559 2.13158 2.80672 3.13389 3.35852 3.46483 3.52235 3.75514 3.90667 4.07769 4.17872 4.25732 4.31523 4.36450 4.44159 4.50550 4.58992 4.59508 4.70787 4.79059 4.88158 4.98018 5.00034 5.02343 5.05934 5.09391 5.12336 5.25579 5.33480 5.46338 5.50106 5.51595 5.62234 5.65104 5.91722 6.11294 6.88762 6.99745 7.70259 8.70417 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.004383 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.322339 B = 6386.587127 C = 7793.694879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.076 0.924 4 C -0.108 4.108 5 C -0.142 4.142 6 C 0.068 3.932 7 H 0.056 0.944 8 O -0.346 6.346 9 C 0.496 3.504 10 O -0.532 6.532 11 C -0.239 4.239 12 C -0.012 4.012 13 C -0.203 4.203 14 C -0.027 4.027 15 C -0.257 4.257 16 C 0.157 3.843 17 O -0.189 6.189 18 C -0.429 4.429 19 H 0.112 0.888 20 C -0.020 4.020 21 N -0.904 5.904 22 Si 1.024 2.976 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.246 1.246 26 C -0.104 4.104 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.131 0.869 38 H 0.272 0.728 39 H 0.076 0.924 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.124 -5.180 -1.206 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.094 0.906 4 C -0.145 4.145 5 C -0.179 4.179 6 C 0.013 3.987 7 H 0.075 0.925 8 O -0.263 6.263 9 C 0.343 3.657 10 O -0.423 6.423 11 C -0.242 4.242 12 C -0.030 4.030 13 C -0.221 4.221 14 C -0.045 4.045 15 C -0.276 4.276 16 C 0.101 3.899 17 O -0.091 6.091 18 C -0.505 4.505 19 H 0.129 0.871 20 C -0.220 4.220 21 N -0.540 5.540 22 Si 0.842 3.158 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.169 1.169 26 C -0.142 4.142 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.173 0.827 35 H 0.184 0.816 36 H 0.179 0.821 37 H 0.149 0.851 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.875 -4.483 -0.810 16.516 hybrid contribution 1.482 0.574 0.264 1.611 sum -14.393 -3.909 -0.546 14.924 Atomic orbital electron populations 1.21745 0.92223 1.02713 1.02633 1.21961 0.97479 0.98776 0.92936 0.90558 1.22174 0.95391 0.99016 0.97923 1.22529 0.99610 1.01970 0.93836 1.23863 0.97201 0.85776 0.91867 0.92544 1.86546 1.23716 1.46623 1.69462 1.21467 0.80831 0.85782 0.77577 1.90969 1.58971 1.43024 1.49321 1.18529 0.91151 0.99988 1.14544 1.21391 0.99310 0.90704 0.91630 1.21229 0.95581 1.00258 1.05068 1.21543 0.93261 0.96339 0.93336 1.21302 1.01728 0.97276 1.07249 1.19988 0.89771 0.88904 0.91189 1.84152 1.17292 1.39181 1.68460 1.22115 0.78648 1.12581 1.37118 0.87072 1.26812 1.06059 0.94460 0.94664 1.70312 1.37104 1.13310 1.33240 0.84529 0.72733 0.79938 0.78572 1.18561 1.19772 1.16884 1.22667 0.91442 1.01082 0.98964 0.91774 0.91405 0.91829 0.89332 0.90846 0.90693 0.93543 0.82655 0.81562 0.82072 0.85099 0.91865 0.90570 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.15 71.98 0.66 -1.17 16 2 C -0.09 -1.77 3.47 -9.65 -0.03 -1.81 16 3 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.11 -2.23 6.39 31.39 0.20 -2.03 16 5 C -0.14 -4.24 6.57 31.32 0.21 -4.04 16 6 C 0.07 2.31 3.23 31.67 0.10 2.41 16 7 H 0.06 2.29 7.14 -2.39 -0.02 2.28 16 8 O -0.35 -13.52 9.21 -56.73 -0.52 -14.05 16 9 C 0.50 24.42 7.89 70.23 0.55 24.97 16 10 O -0.53 -32.02 14.42 26.80 0.39 -31.64 16 11 C -0.24 -11.07 5.89 -20.00 -0.12 -11.19 16 12 C -0.01 -0.42 9.61 22.53 0.22 -0.20 16 13 C -0.20 -5.67 10.02 22.25 0.22 -5.45 16 14 C -0.03 -0.83 10.03 22.30 0.22 -0.60 16 15 C -0.26 -10.82 9.16 22.36 0.20 -10.62 16 16 C 0.16 8.15 6.66 22.92 0.15 8.31 16 17 O -0.19 -11.98 7.84 0.96 0.01 -11.97 16 18 C -0.43 -25.65 9.49 67.93 0.64 -25.01 16 19 H 0.11 5.89 5.21 -2.91 -0.02 5.87 16 20 C -0.02 -1.19 5.49 84.85 0.47 -0.73 16 21 N -0.90 -58.58 13.67 21.62 0.30 -58.28 16 22 Si 1.02 43.48 29.55 68.60 2.03 45.51 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 26 C -0.10 -2.47 6.04 31.88 0.19 -2.27 16 27 H 0.06 0.80 8.08 -2.39 -0.02 0.78 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 1.49 7.79 -2.39 -0.02 1.47 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.16 4.27 7.61 -2.91 -0.02 4.24 16 35 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 37 H 0.13 5.48 5.64 -2.91 -0.02 5.47 16 38 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.09 1.99 8.06 -2.39 -0.02 1.97 16 Total: -1.00 -82.23 335.97 7.13 -75.10 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 1.04 Total: 24.75 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 3.89 Total: -29.42 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.30 Total: -58.28 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -0.13 Total: -57.65 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -82.23 7.13 -75.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272343331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.466 kcal (2) G-P(sol) polarization free energy of solvation -82.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds