Wall clock time and date at job start Tue Mar 31 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.05241 * 2 1 4 4 C 1.54265 * 110.03535 * 121.41673 * 2 1 3 5 5 C 1.54884 * 104.19575 * 142.89808 * 4 2 1 6 6 C 1.54896 * 102.74725 * 322.05736 * 5 4 2 7 7 H 1.09006 * 110.59859 * 279.21067 * 6 5 4 8 8 O 1.45203 * 110.48633 * 156.62433 * 6 5 4 9 9 C 1.34750 * 117.00163 * 95.22151 * 8 6 5 10 10 O 1.21512 * 120.00101 * 0.02562 * 9 8 6 11 11 C 1.47396 * 119.99891 * 179.97438 * 9 8 6 12 12 C 1.39722 * 120.20557 * 0.02562 * 11 9 8 13 13 C 1.37803 * 119.91634 * 179.97438 * 12 11 9 14 14 C 1.38593 * 120.33373 * 0.02562 * 13 12 11 15 15 C 1.38024 * 120.40990 * 359.71097 * 14 13 12 16 16 C 1.38841 * 120.07456 * 0.56595 * 15 14 13 17 17 O 1.35505 * 120.15852 * 179.72068 * 16 15 14 18 18 C 1.34809 * 117.00726 * 5.57870 * 17 16 15 19 19 H 1.08007 * 119.99683 * 354.93456 * 18 17 16 20 20 C 1.38702 * 120.00441 * 174.65566 * 18 17 16 21 21 N 1.31512 * 120.00219 * 180.27488 * 20 18 17 22 22 Si 1.86796 * 119.99616 * 0.27805 * 20 18 17 23 23 H 1.48506 * 109.47389 * 90.00014 * 22 20 18 24 24 H 1.48503 * 109.47012 * 209.99900 * 22 20 18 25 25 H 1.48498 * 109.47549 * 329.99768 * 22 20 18 26 26 C 1.53871 * 110.03020 * 238.58767 * 2 1 3 27 27 H 1.09007 * 109.47030 * 181.41751 * 1 2 3 28 28 H 1.09004 * 109.47431 * 301.41028 * 1 2 3 29 29 H 1.09001 * 109.47914 * 61.41611 * 1 2 3 30 30 H 1.09001 * 110.48350 * 261.57671 * 4 2 1 31 31 H 1.08998 * 110.48675 * 24.21785 * 4 2 1 32 32 H 1.09003 * 110.75401 * 203.74416 * 5 4 2 33 33 H 1.08994 * 110.76225 * 80.36989 * 5 4 2 34 34 H 1.08005 * 120.04447 * 359.96225 * 12 11 9 35 35 H 1.07999 * 119.83581 * 179.97438 * 13 12 11 36 36 H 1.07993 * 119.79426 * 179.97438 * 14 13 12 37 37 H 1.07993 * 119.96024 * 180.30428 * 15 14 13 38 38 H 0.96999 * 120.00121 * 180.02562 * 21 20 18 39 39 H 1.08999 * 110.03445 * 121.43062 * 26 2 1 40 40 H 1.08996 * 110.03506 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0585 -0.7555 1.2368 5 6 3.3137 -1.5006 0.7191 6 6 2.8875 -1.9405 -0.7036 7 1 2.2778 -2.8430 -0.6594 8 8 4.0548 -2.1577 -1.5395 9 6 4.5150 -3.4209 -1.6314 10 8 3.9559 -4.3165 -1.0298 11 6 5.6959 -3.7163 -2.4624 12 6 6.3418 -2.6899 -3.1564 13 6 7.4457 -2.9728 -3.9312 14 6 7.9195 -4.2717 -4.0268 15 6 7.2952 -5.2952 -3.3428 16 6 6.1783 -5.0303 -2.5618 17 8 5.5607 -6.0348 -1.8941 18 6 6.1465 -7.2483 -1.9356 19 1 7.0208 -7.4052 -2.5500 20 6 5.6298 -8.2938 -1.1848 21 7 6.2044 -9.4762 -1.2211 22 14 4.1177 -8.0225 -0.1221 23 1 2.8965 -8.3163 -0.9144 24 1 4.1723 -8.9247 1.0561 25 1 4.0821 -6.6107 0.3369 26 6 2.0570 -0.7535 -1.2338 27 1 -0.3633 -1.0274 0.0254 28 1 -0.3634 0.5356 0.8771 29 1 -0.3635 0.4917 -0.9024 30 1 2.3297 -0.0535 2.0254 31 1 1.3144 -1.4660 1.5966 32 1 3.5326 -2.3677 1.3422 33 1 4.1710 -0.8289 0.6750 34 1 5.9762 -1.6761 -3.0858 35 1 7.9436 -2.1785 -4.4673 36 1 8.7850 -4.4836 -4.6368 37 1 7.6736 -6.3038 -3.4185 38 1 5.8429 -10.2075 -0.6963 39 1 2.6866 -0.0953 -1.8325 40 1 1.2229 -1.1195 -1.8323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272343332.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:01 Heat of formation + Delta-G solvation = -118.305012 kcal Electronic energy + Delta-G solvation = -23058.305338 eV Core-core repulsion = 19609.612103 eV Total energy + Delta-G solvation = -3448.693234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73605 -40.69549 -39.06465 -38.25237 -36.86884 -34.57637 -32.54594 -31.60129 -30.87672 -29.59043 -27.41353 -26.05195 -25.03914 -23.31809 -22.23962 -21.56645 -20.60984 -19.93412 -19.48692 -18.57644 -17.64875 -16.94467 -16.67563 -16.26437 -15.99300 -15.79132 -15.68115 -15.49582 -15.09895 -14.48516 -14.40873 -14.24401 -14.09487 -14.01748 -13.41255 -13.16361 -12.95756 -12.89087 -12.69499 -12.64761 -12.43073 -12.05554 -11.93741 -11.76680 -11.68736 -11.66894 -11.39118 -11.29662 -11.11614 -11.01286 -9.99258 -9.24262 -8.62359 -6.32037 -0.13033 0.59763 1.22019 1.26044 1.53615 1.66400 1.69190 2.24862 2.69184 2.90054 3.07877 3.47220 3.52039 3.74224 3.86402 4.01824 4.15900 4.23943 4.29994 4.41768 4.43867 4.44881 4.54814 4.56139 4.68849 4.74958 4.84407 4.90389 4.95754 5.03050 5.05578 5.10256 5.24735 5.25674 5.29855 5.43622 5.50921 5.52804 5.58365 5.67137 5.79089 6.09565 6.72993 6.90607 7.49256 8.47643 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.005276 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.716669 B = 5305.316084 C = 6972.070407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.096 0.904 4 C -0.112 4.112 5 C -0.141 4.141 6 C 0.068 3.932 7 H 0.061 0.939 8 O -0.343 6.343 9 C 0.504 3.496 10 O -0.537 6.537 11 C -0.227 4.227 12 C -0.012 4.012 13 C -0.192 4.192 14 C -0.029 4.029 15 C -0.250 4.250 16 C 0.169 3.831 17 O -0.209 6.209 18 C -0.405 4.405 19 H 0.097 0.903 20 C 0.030 3.970 21 N -0.906 5.906 22 Si 0.948 3.052 23 H -0.274 1.274 24 H -0.264 1.264 25 H -0.264 1.264 26 C -0.110 4.110 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.159 0.841 37 H 0.123 0.877 38 H 0.287 0.713 39 H 0.090 0.910 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.326 22.109 -0.822 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.114 0.886 4 C -0.150 4.150 5 C -0.179 4.179 6 C 0.013 3.987 7 H 0.080 0.920 8 O -0.260 6.260 9 C 0.352 3.648 10 O -0.428 6.428 11 C -0.230 4.230 12 C -0.030 4.030 13 C -0.210 4.210 14 C -0.047 4.047 15 C -0.269 4.269 16 C 0.116 3.884 17 O -0.113 6.113 18 C -0.481 4.481 19 H 0.114 0.886 20 C -0.171 4.171 21 N -0.545 5.545 22 Si 0.772 3.228 23 H -0.199 1.199 24 H -0.189 1.189 25 H -0.189 1.189 26 C -0.148 4.148 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.180 0.820 35 H 0.187 0.813 36 H 0.176 0.824 37 H 0.141 0.859 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.741 21.620 -0.407 22.373 hybrid contribution -0.456 -1.252 0.550 1.441 sum -6.197 20.368 0.144 21.290 Atomic orbital electron populations 1.21905 0.93816 1.01750 1.02779 1.21700 0.96528 0.99838 0.92486 0.88552 1.22386 0.95307 0.99085 0.98214 1.22895 1.00513 1.00379 0.94093 1.23916 0.84796 0.99460 0.90490 0.92039 1.86547 1.45647 1.28816 1.65020 1.21303 0.83688 0.80792 0.79053 1.90890 1.58752 1.47584 1.45581 1.18505 1.01298 0.92190 1.11009 1.21444 0.92938 0.97733 0.90878 1.21289 0.98763 0.97249 1.03736 1.21554 0.97446 0.91978 0.93707 1.21327 0.99307 1.01814 1.04466 1.19682 0.91122 0.87246 0.90338 1.83736 1.46856 1.17048 1.63683 1.20929 1.13734 0.84258 1.29173 0.88577 1.25020 1.00715 0.93739 0.97640 1.69667 1.41474 1.01752 1.41636 0.85516 0.79181 0.79129 0.78962 1.19917 1.18859 1.18872 1.22344 0.98479 0.94910 0.99039 0.93496 0.91298 0.91608 0.89057 0.91531 0.93369 0.89523 0.82030 0.81302 0.82389 0.85940 0.90293 0.89174 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.85 71.98 0.64 -1.31 16 2 C -0.09 -1.36 3.50 -10.07 -0.04 -1.39 16 3 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.11 -2.05 6.36 31.67 0.20 -1.85 16 5 C -0.14 -3.63 6.63 31.89 0.21 -3.42 16 6 C 0.07 2.01 3.23 31.67 0.10 2.12 16 7 H 0.06 2.16 7.14 -2.38 -0.02 2.14 16 8 O -0.34 -11.73 9.20 -56.61 -0.52 -12.25 16 9 C 0.50 21.91 7.89 70.23 0.55 22.46 16 10 O -0.54 -28.13 14.22 26.79 0.38 -27.74 16 11 C -0.23 -9.49 5.89 -20.00 -0.12 -9.61 16 12 C -0.01 -0.36 9.61 22.53 0.22 -0.15 16 13 C -0.19 -4.95 10.02 22.25 0.22 -4.72 16 14 C -0.03 -0.87 10.03 22.30 0.22 -0.65 16 15 C -0.25 -10.49 9.16 22.36 0.20 -10.28 16 16 C 0.17 8.24 6.66 22.92 0.15 8.40 16 17 O -0.21 -12.14 6.67 1.06 0.01 -12.14 16 18 C -0.41 -24.47 9.95 67.93 0.68 -23.79 16 19 H 0.10 5.82 5.44 -2.91 -0.02 5.81 16 20 C 0.03 1.80 5.49 84.85 0.47 2.27 16 21 N -0.91 -54.72 13.96 21.62 0.30 -54.42 16 22 Si 0.95 49.98 28.62 68.60 1.96 51.94 16 23 H -0.27 -14.16 7.11 99.48 0.71 -13.46 16 24 H -0.26 -12.73 7.11 99.48 0.71 -12.03 16 25 H -0.26 -14.99 6.91 99.48 0.69 -14.31 16 26 C -0.11 -2.24 6.22 31.32 0.19 -2.05 16 27 H 0.05 0.73 8.12 -2.38 -0.02 0.71 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.27 7.84 -2.39 -0.02 1.25 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.16 3.79 7.61 -2.91 -0.02 3.77 16 35 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.12 5.53 5.64 -2.91 -0.02 5.51 16 38 H 0.29 15.96 8.31 -92.71 -0.77 15.19 16 39 H 0.09 1.66 8.07 -2.39 -0.02 1.64 16 40 H 0.08 1.50 7.67 -2.39 -0.02 1.48 16 Total: -1.00 -74.35 334.08 7.06 -67.29 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.02 Total: 11.31 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 3.91 Total: -23.98 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.30 Total: -54.42 kcal Atomic # 8 Polarization: -52.00 SS G_CDS: -0.13 Total: -52.14 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.96 Total: 51.94 kcal Total: -74.35 7.06 -67.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272343332.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.020 kcal (2) G-P(sol) polarization free energy of solvation -74.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds