Wall clock time and date at job start Tue Mar 31 2020 06:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99785 * 2 1 4 4 H 1.48502 * 109.46967 * 269.99836 * 3 2 1 5 5 H 1.48493 * 109.46955 * 30.00017 * 3 2 1 6 6 H 1.48502 * 109.46848 * 150.00177 * 3 2 1 7 7 C 1.37879 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00278 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00111 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46932 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47003 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00279 * 180.02562 * 11 10 9 13 13 O 1.21597 * 119.99876 * 359.97438 * 12 11 10 14 14 C 1.47524 * 120.00234 * 180.02562 * 12 11 10 15 15 C 1.39746 * 120.76880 * 359.97438 * 14 12 11 16 16 C 1.38883 * 118.86778 * 179.97438 * 15 14 12 17 17 C 1.37853 * 119.45023 * 359.81636 * 16 15 14 18 18 N 1.32758 * 120.40838 * 0.31378 * 17 16 15 19 19 C 1.31857 * 122.58787 * 359.78150 * 18 17 16 20 20 O 1.35427 * 119.88532 * 179.97438 * 19 18 17 21 21 C 1.50795 * 122.26596 * 180.39393 * 17 16 15 22 22 C 1.52696 * 110.60620 * 342.28870 * 21 17 16 23 23 C 1.53325 * 108.43049 * 51.30056 * 22 21 17 24 24 C 1.50552 * 117.74883 * 179.78899 * 16 15 14 25 25 H 0.96997 * 120.00250 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46706 * 59.99786 * 9 7 2 27 27 H 1.09000 * 109.46970 * 300.00284 * 9 7 2 28 28 H 1.08999 * 109.47465 * 60.00416 * 10 9 7 29 29 H 1.09000 * 109.47660 * 300.00027 * 10 9 7 30 30 H 0.97001 * 120.00273 * 0.02562 * 11 10 9 31 31 H 1.07995 * 120.56706 * 359.93918 * 15 14 12 32 32 H 0.96695 * 114.00428 * 270.01964 * 20 19 18 33 33 H 1.09005 * 109.24315 * 221.99799 * 21 17 16 34 34 H 1.08999 * 109.21918 * 102.56424 * 21 17 16 35 35 H 1.08995 * 109.64369 * 291.61432 * 22 21 17 36 36 H 1.09000 * 109.63732 * 170.98346 * 22 21 17 37 37 H 1.08998 * 109.69539 * 170.29809 * 23 22 21 38 38 H 1.08999 * 109.73228 * 49.72716 * 23 22 21 39 39 H 1.09006 * 109.26040 * 42.27687 * 24 16 15 40 40 H 1.09004 * 109.25732 * 282.83694 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0001 11 7 5.4866 -2.6364 -0.0001 12 6 6.1606 -3.8035 -0.0008 13 8 5.5527 -4.8566 -0.0008 14 6 7.6358 -3.8035 -0.0002 15 6 8.3507 -2.6027 0.0004 16 6 9.7388 -2.6487 0.0014 17 6 10.3764 -3.8709 0.0056 18 7 9.6721 -4.9963 0.0024 19 6 8.3536 -5.0089 -0.0006 20 8 7.6901 -6.1895 -0.0043 21 6 11.8792 -3.9949 0.0157 22 6 12.5296 -2.6821 -0.4147 23 6 11.9345 -1.5474 0.4274 24 6 10.4835 -1.3403 -0.0029 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6807 0.8905 27 1 3.8753 -0.6795 -0.8894 28 1 3.6587 -3.1501 -0.8903 29 1 3.6580 -3.1505 0.8896 30 1 5.9717 -1.7964 0.0003 31 1 7.8326 -1.6551 -0.0005 32 1 7.4996 -6.5309 -0.8886 33 1 12.1790 -4.7866 -0.6709 34 1 12.2116 -4.2475 1.0226 35 1 12.3259 -2.5010 -1.4700 36 1 13.6058 -2.7352 -0.2499 37 1 12.5010 -0.6310 0.2618 38 1 11.9698 -1.8152 1.4834 39 1 9.9992 -0.6487 0.6866 40 1 10.4633 -0.9184 -1.0077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272965182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:15 Heat of formation + Delta-G solvation = -62.613279 kcal Electronic energy + Delta-G solvation = -22416.830502 eV Core-core repulsion = 19002.844993 eV Total energy + Delta-G solvation = -3413.985509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.21697 -39.17233 -37.92412 -35.85498 -35.00266 -33.81237 -32.76259 -30.91233 -29.85737 -29.68076 -25.48438 -24.54198 -23.64735 -22.87222 -21.22315 -20.83921 -19.87053 -18.59801 -17.42283 -17.20470 -16.82420 -16.19322 -15.27724 -15.16500 -14.92697 -14.51291 -14.29568 -14.24280 -14.11782 -13.74622 -13.42966 -13.24072 -13.12673 -12.87349 -12.61953 -11.89110 -11.79334 -11.53048 -11.35796 -11.24631 -11.15439 -11.14697 -10.44825 -10.32747 -10.05766 -9.95527 -9.93979 -9.43668 -9.29336 -8.89072 -8.67164 -8.55799 -6.14011 -4.14447 0.42635 0.85339 2.84374 3.21924 3.26906 3.29275 3.30777 3.45397 3.67617 4.15511 4.20355 4.34377 4.43751 4.45740 4.48644 4.70403 4.84809 5.04275 5.11153 5.18638 5.19330 5.27657 5.29534 5.44713 5.50824 5.57293 5.63796 5.72178 5.87785 5.92955 6.06071 6.15823 6.21289 6.50757 6.65637 7.07561 7.18021 7.42361 7.62420 7.66704 7.80431 8.39351 8.46877 8.90383 9.45751 10.99049 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.003561 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.598228 B = 7861.360480 C = 9215.043675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.131 3.869 11 N -0.721 5.721 12 C 0.554 3.446 13 O -0.524 6.524 14 C -0.199 4.199 15 C -0.031 4.031 16 C -0.147 4.147 17 C 0.177 3.823 18 N -0.514 5.514 19 C 0.371 3.629 20 O -0.459 6.459 21 C -0.071 4.071 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.076 4.076 25 H 0.265 0.735 26 H 0.022 0.978 27 H 0.017 0.983 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.393 0.607 31 H 0.143 0.857 32 H 0.404 0.596 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.530 -2.430 -1.703 27.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.009 3.991 11 N -0.372 5.372 12 C 0.339 3.661 13 O -0.401 6.401 14 C -0.206 4.206 15 C -0.058 4.058 16 C -0.149 4.149 17 C 0.041 3.959 18 N -0.233 5.233 19 C 0.189 3.811 20 O -0.266 6.266 21 C -0.109 4.109 22 C -0.158 4.158 23 C -0.160 4.160 24 C -0.113 4.113 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.227 0.773 31 H 0.161 0.839 32 H 0.264 0.736 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 27.268 -3.858 -1.103 27.562 hybrid contribution -0.128 1.984 -0.447 2.037 sum 27.140 -1.875 -1.550 27.249 Atomic orbital electron populations 1.69899 1.06294 1.27092 1.50300 1.25003 0.94766 0.99143 0.94356 0.86753 0.80258 0.83581 0.78492 1.20201 1.21216 1.19122 1.20909 0.88570 0.94951 1.51761 0.90552 1.19801 0.98111 0.91250 0.96820 1.21558 0.75399 1.00281 1.01883 1.46248 1.09338 1.07467 1.74124 1.17802 0.85827 0.84650 0.77835 1.90808 1.69279 1.30798 1.49199 1.21265 0.95520 0.94248 1.09538 1.21795 0.93477 0.97765 0.92717 1.20396 0.93730 0.96445 1.04324 1.20999 0.96116 0.86557 0.92214 1.67101 1.08215 1.31964 1.16040 1.18986 0.85899 0.85231 0.90999 1.84727 1.73968 1.34228 1.33689 1.20462 0.87887 0.99073 1.03480 1.21589 1.00003 0.93797 1.00380 1.21590 0.95074 0.99036 1.00285 1.20431 0.95170 0.93016 1.02726 0.92504 0.95991 0.96429 0.91708 0.91661 0.77288 0.83900 0.73626 0.89352 0.89401 0.91241 0.90637 0.90869 0.91319 0.90138 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 10 C 0.13 2.65 5.61 -4.04 -0.02 2.62 16 11 N -0.72 -11.94 5.51 -61.35 -0.34 -12.28 16 12 C 0.55 9.49 7.77 -12.48 -0.10 9.39 16 13 O -0.52 -10.72 15.22 -16.36 -0.25 -10.97 16 14 C -0.20 -2.82 5.90 -104.78 -0.62 -3.44 16 15 C -0.03 -0.35 9.21 -38.78 -0.36 -0.70 16 16 C -0.15 -1.42 5.74 -104.60 -0.60 -2.02 16 17 C 0.18 1.89 6.63 -82.29 -0.55 1.34 16 18 N -0.51 -6.83 10.18 -9.20 -0.09 -6.93 16 19 C 0.37 5.38 7.78 -16.77 -0.13 5.25 16 20 O -0.46 -6.74 11.69 -39.61 -0.46 -7.20 16 21 C -0.07 -0.53 5.91 -27.99 -0.17 -0.69 16 22 C -0.12 -0.63 5.97 -26.72 -0.16 -0.79 16 23 C -0.12 -0.65 5.98 -26.69 -0.16 -0.81 16 24 C -0.08 -0.50 5.67 -28.08 -0.16 -0.66 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 27 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.39 5.33 6.58 -40.82 -0.27 5.06 16 31 H 0.14 1.25 6.51 -52.49 -0.34 0.91 16 32 H 0.40 4.22 9.06 45.56 0.41 4.63 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 39 H 0.08 0.48 8.13 -51.93 -0.42 0.06 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 330.78 15.07 4.98 4.98 Total: -1.00 -34.46 330.78 -8.39 -42.85 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.77 Total: 4.00 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -3.56 Total: -4.13 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.34 Total: -45.60 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.71 Total: -18.17 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.46 -8.39 -42.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272965182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.767 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds