Wall clock time and date at job start Tue Mar 31 2020 06:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99785 * 2 1 4 4 H 1.48502 * 109.46967 * 269.99836 * 3 2 1 5 5 H 1.48493 * 109.46955 * 30.00017 * 3 2 1 6 6 H 1.48502 * 109.46848 * 150.00177 * 3 2 1 7 7 C 1.37879 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00278 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00111 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46932 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47003 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00279 * 180.02562 * 11 10 9 13 13 O 1.21597 * 119.99876 * 359.97438 * 12 11 10 14 14 C 1.47524 * 120.00234 * 180.02562 * 12 11 10 15 15 C 1.39746 * 120.76880 * 359.97438 * 14 12 11 16 16 C 1.38883 * 118.86778 * 179.97438 * 15 14 12 17 17 C 1.37853 * 119.45023 * 359.81636 * 16 15 14 18 18 N 1.32758 * 120.40838 * 0.31378 * 17 16 15 19 19 C 1.31857 * 122.58787 * 359.78150 * 18 17 16 20 20 O 1.35427 * 119.88532 * 179.97438 * 19 18 17 21 21 C 1.50795 * 122.26596 * 180.39393 * 17 16 15 22 22 C 1.52696 * 110.60620 * 342.28870 * 21 17 16 23 23 C 1.53325 * 108.43049 * 51.30056 * 22 21 17 24 24 C 1.50552 * 117.74883 * 179.78899 * 16 15 14 25 25 H 0.96997 * 120.00250 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.46706 * 59.99786 * 9 7 2 27 27 H 1.09000 * 109.46970 * 300.00284 * 9 7 2 28 28 H 1.08999 * 109.47465 * 60.00416 * 10 9 7 29 29 H 1.09000 * 109.47660 * 300.00027 * 10 9 7 30 30 H 0.97001 * 120.00273 * 0.02562 * 11 10 9 31 31 H 1.07995 * 120.56706 * 359.93918 * 15 14 12 32 32 H 0.96695 * 114.00428 * 270.01964 * 20 19 18 33 33 H 1.09005 * 109.24315 * 221.99799 * 21 17 16 34 34 H 1.08999 * 109.21918 * 102.56424 * 21 17 16 35 35 H 1.08995 * 109.64369 * 291.61432 * 22 21 17 36 36 H 1.09000 * 109.63732 * 170.98346 * 22 21 17 37 37 H 1.08998 * 109.69539 * 170.29809 * 23 22 21 38 38 H 1.08999 * 109.73228 * 49.72716 * 23 22 21 39 39 H 1.09006 * 109.26040 * 42.27687 * 24 16 15 40 40 H 1.09004 * 109.25732 * 282.83694 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0001 11 7 5.4866 -2.6364 -0.0001 12 6 6.1606 -3.8035 -0.0008 13 8 5.5527 -4.8566 -0.0008 14 6 7.6358 -3.8035 -0.0002 15 6 8.3507 -2.6027 0.0004 16 6 9.7388 -2.6487 0.0014 17 6 10.3764 -3.8709 0.0056 18 7 9.6721 -4.9963 0.0024 19 6 8.3536 -5.0089 -0.0006 20 8 7.6901 -6.1895 -0.0043 21 6 11.8792 -3.9949 0.0157 22 6 12.5296 -2.6821 -0.4147 23 6 11.9345 -1.5474 0.4274 24 6 10.4835 -1.3403 -0.0029 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6807 0.8905 27 1 3.8753 -0.6795 -0.8894 28 1 3.6587 -3.1501 -0.8903 29 1 3.6580 -3.1505 0.8896 30 1 5.9717 -1.7964 0.0003 31 1 7.8326 -1.6551 -0.0005 32 1 7.4996 -6.5309 -0.8886 33 1 12.1790 -4.7866 -0.6709 34 1 12.2116 -4.2475 1.0226 35 1 12.3259 -2.5010 -1.4700 36 1 13.6058 -2.7352 -0.2499 37 1 12.5010 -0.6310 0.2618 38 1 11.9698 -1.8152 1.4834 39 1 9.9992 -0.6487 0.6866 40 1 10.4633 -0.9184 -1.0077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272965182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:15 Heat of formation + Delta-G solvation = -88.934908 kcal Electronic energy + Delta-G solvation = -22417.971893 eV Core-core repulsion = 19002.844993 eV Total energy + Delta-G solvation = -3415.126900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.15712 -40.40777 -38.88609 -36.70792 -36.53757 -34.99848 -34.43367 -32.26577 -31.00144 -30.49680 -27.08876 -25.51097 -24.54211 -23.67515 -22.69136 -22.16403 -20.79588 -19.60618 -19.01208 -18.49511 -18.09840 -17.13871 -16.55336 -16.42945 -16.18895 -15.89513 -15.38788 -15.19566 -14.96719 -14.76432 -14.67788 -14.43548 -14.20300 -13.88067 -13.54641 -13.34892 -13.06068 -12.79898 -12.51896 -12.23757 -12.17996 -11.80058 -11.76321 -11.72777 -11.62278 -11.52139 -11.14927 -10.85755 -10.78992 -10.44941 -10.15539 -9.67623 -8.30035 -6.37968 -0.54370 -0.02187 1.39334 1.42759 1.53780 1.71355 2.04898 2.37325 2.39399 2.65256 3.05033 3.34065 3.50591 3.60240 3.76588 3.95963 4.07498 4.09924 4.32349 4.37236 4.39936 4.47505 4.61586 4.65241 4.70977 4.72501 4.82601 4.99706 5.06995 5.08539 5.18839 5.27243 5.30455 5.36616 5.38756 5.49665 5.51793 5.61583 6.21156 6.44324 6.53306 6.70166 6.77131 7.14055 7.26739 8.86888 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.003561 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.598228 B = 7861.360480 C = 9215.043675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.234 1.234 7 C -0.541 4.541 8 H 0.027 0.973 9 C -0.012 4.012 10 C 0.146 3.854 11 N -0.709 5.709 12 C 0.555 3.445 13 O -0.566 6.566 14 C -0.219 4.219 15 C -0.025 4.025 16 C -0.139 4.139 17 C 0.173 3.827 18 N -0.533 5.533 19 C 0.353 3.647 20 O -0.480 6.480 21 C -0.072 4.072 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.077 4.077 25 H 0.268 0.732 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.412 0.588 31 H 0.170 0.830 32 H 0.415 0.585 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.553 0.610 -1.816 31.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.157 1.157 7 C -0.579 4.579 8 H 0.046 0.954 9 C -0.050 4.050 10 C 0.022 3.978 11 N -0.361 5.361 12 C 0.342 3.658 13 O -0.447 6.447 14 C -0.226 4.226 15 C -0.050 4.050 16 C -0.141 4.141 17 C 0.037 3.963 18 N -0.253 5.253 19 C 0.171 3.829 20 O -0.289 6.289 21 C -0.110 4.110 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.114 4.114 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.249 0.751 31 H 0.187 0.813 32 H 0.276 0.724 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 31.338 -0.815 -1.224 31.373 hybrid contribution -1.342 0.937 -0.417 1.689 sum 29.996 0.122 -1.640 30.041 Atomic orbital electron populations 1.70080 1.08691 1.28490 1.51919 1.26119 0.95702 1.04011 0.93597 0.85524 0.79741 0.77103 0.79430 1.18805 1.21371 1.15662 1.21251 0.91593 0.93387 1.51696 0.95413 1.19656 0.94426 0.92625 0.98275 1.21087 0.77724 0.98787 1.00202 1.45918 1.07615 1.08477 1.74073 1.18236 0.87146 0.83880 0.76490 1.90782 1.70488 1.32293 1.51095 1.20984 0.93379 0.95607 1.12586 1.22108 0.94147 0.97456 0.91317 1.20798 0.93381 0.97657 1.02252 1.21720 0.97634 0.86385 0.90579 1.67162 1.07649 1.33507 1.16944 1.19154 0.86533 0.85172 0.92052 1.84671 1.74352 1.34879 1.35027 1.20612 0.85700 1.00692 1.03972 1.21604 1.00908 0.92335 1.00424 1.21622 0.94394 0.99868 1.00018 1.20580 0.95646 0.91121 1.04053 0.92311 0.94335 0.94265 0.93389 0.93767 0.75097 0.81278 0.72361 0.89293 0.88774 0.91030 0.88729 0.88876 0.91614 0.88833 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 2 C 0.00 0.15 5.47 84.66 0.46 0.62 16 3 Si 0.96 41.34 27.47 68.60 1.88 43.23 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.23 -8.78 6.54 99.48 0.65 -8.13 16 7 C -0.54 -30.69 9.66 25.60 0.25 -30.45 16 8 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 9 C -0.01 -0.53 4.16 29.85 0.12 -0.40 16 10 C 0.15 5.95 5.61 86.38 0.48 6.43 16 11 N -0.71 -22.66 5.51 -466.29 -2.57 -25.22 16 12 C 0.56 19.08 7.77 86.69 0.67 19.76 16 13 O -0.57 -24.11 15.22 16.67 0.25 -23.86 16 14 C -0.22 -6.05 5.90 -19.96 -0.12 -6.17 16 15 C -0.02 -0.48 9.21 22.79 0.21 -0.27 16 16 C -0.14 -2.27 5.74 -19.85 -0.11 -2.38 16 17 C 0.17 3.33 6.63 42.36 0.28 3.61 16 18 N -0.53 -13.89 10.18 -296.23 -3.02 -16.91 16 19 C 0.35 10.33 7.78 85.19 0.66 10.99 16 20 O -0.48 -14.81 11.69 -66.54 -0.78 -15.58 16 21 C -0.07 -0.88 5.91 29.78 0.18 -0.70 16 22 C -0.11 -0.77 5.97 30.60 0.18 -0.59 16 23 C -0.12 -0.76 5.98 30.62 0.18 -0.58 16 24 C -0.08 -0.67 5.67 29.72 0.17 -0.50 16 25 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 26 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 27 H 0.04 1.56 7.57 -2.39 -0.02 1.54 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.41 9.91 6.58 -92.71 -0.61 9.30 16 31 H 0.17 2.25 6.51 -2.91 -0.02 2.23 16 32 H 0.42 9.47 9.06 -74.06 -0.67 8.80 16 33 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 0.48 8.09 -2.39 -0.02 0.46 16 36 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.07 0.48 8.10 -2.39 -0.02 0.46 16 39 H 0.09 0.64 8.13 -2.38 -0.02 0.62 16 40 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -78.48 330.78 -0.56 -79.04 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -0.26 Total: 18.84 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 3.63 Total: -0.63 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -5.29 Total: -101.03 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -0.52 Total: -39.44 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.88 Total: 43.23 kcal Total: -78.48 -0.56 -79.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272965182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.892 kcal (2) G-P(sol) polarization free energy of solvation -78.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds