Wall clock time and date at job start Tue Mar 31 2020 06:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99532 * 2 1 4 4 H 1.48499 * 109.47588 * 270.00073 * 3 2 1 5 5 H 1.48503 * 109.47212 * 30.00285 * 3 2 1 6 6 H 1.48507 * 109.47003 * 150.00034 * 3 2 1 7 7 C 1.37868 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00481 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47143 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46645 * 180.02562 * 10 9 7 12 12 C 1.34782 * 119.99542 * 179.97438 * 11 10 9 13 13 O 1.21589 * 119.99858 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99920 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99643 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.43933 * 325.08391 * 15 14 12 17 17 C 1.53075 * 109.39927 * 205.18803 * 15 14 12 18 18 C 1.53408 * 108.29935 * 191.76371 * 17 15 14 19 19 O 1.42824 * 108.37699 * 64.71719 * 18 17 15 20 20 C 1.35841 * 117.86129 * 310.82197 * 19 18 17 21 21 C 1.39150 * 118.50027 * 197.06354 * 20 19 18 22 22 C 1.37961 * 120.21515 * 180.28472 * 21 20 19 23 23 C 1.38298 * 119.96190 * 359.97438 * 22 21 20 24 24 C 1.38105 * 119.97688 * 359.92001 * 23 22 21 25 25 C 1.38368 * 121.80430 * 17.20186 * 20 19 18 26 26 H 0.97000 * 120.00279 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47693 * 59.99873 * 9 7 2 28 28 H 1.09000 * 109.47134 * 299.99759 * 9 7 2 29 29 H 1.08994 * 109.47181 * 59.99963 * 10 9 7 30 30 H 1.09000 * 109.46662 * 299.99747 * 10 9 7 31 31 H 0.97001 * 120.00833 * 359.97438 * 11 10 9 32 32 H 0.97001 * 120.00456 * 359.97438 * 14 12 11 33 33 H 1.09001 * 109.70188 * 311.46410 * 17 15 14 34 34 H 1.09002 * 109.69586 * 72.01989 * 17 15 14 35 35 H 1.08999 * 109.68281 * 184.43746 * 18 17 15 36 36 H 1.08999 * 109.68351 * 304.95704 * 18 17 15 37 37 H 1.08004 * 119.89281 * 0.30666 * 21 20 19 38 38 H 1.08000 * 120.02328 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.00844 * 180.19545 * 23 22 21 40 40 H 1.08001 * 119.83808 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 7 1.5130 -4.9307 -0.0032 12 6 2.1869 -6.0979 -0.0038 13 8 3.4028 -6.0978 -0.0034 14 7 1.5131 -7.2651 -0.0049 15 6 2.2457 -8.5338 -0.0062 16 1 3.1570 -8.4259 -0.5944 17 6 1.3685 -9.6269 -0.6217 18 6 2.0268 -10.9849 -0.3461 19 8 2.0265 -11.2074 1.0647 20 6 2.4819 -10.2086 1.8650 21 6 2.8291 -10.5153 3.1771 22 6 3.2901 -9.5271 4.0224 23 6 3.4086 -8.2272 3.5654 24 6 3.0670 -7.9197 2.2631 25 6 2.6040 -8.9077 1.4098 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6242 -2.5575 0.8880 29 1 2.8714 -3.6046 0.8890 30 1 2.8728 -3.6038 -0.8910 31 1 0.5430 -4.9308 -0.0039 32 1 0.5431 -7.2652 -0.0049 33 1 0.3772 -9.6006 -0.1693 34 1 1.2858 -9.4694 -1.6971 35 1 1.4620 -11.7741 -0.8423 36 1 3.0517 -10.9781 -0.7171 37 1 2.7378 -11.5302 3.5349 38 1 3.5583 -9.7685 5.0403 39 1 3.7723 -7.4537 4.2255 40 1 3.1608 -6.9039 1.9084 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273021955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:32 Heat of formation + Delta-G solvation = -50.082237 kcal Electronic energy + Delta-G solvation = -22580.414789 eV Core-core repulsion = 19166.972667 eV Total energy + Delta-G solvation = -3413.442122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08666 -39.46902 -37.56004 -35.87891 -34.66870 -32.94665 -31.95377 -30.70005 -30.22710 -29.30423 -25.66933 -24.42977 -23.78656 -22.41737 -21.11961 -20.62377 -20.29696 -18.24336 -17.79794 -16.81653 -16.58076 -16.33101 -15.81955 -15.23806 -15.03054 -14.54331 -14.39149 -14.16988 -13.86515 -13.77686 -13.55403 -13.25855 -12.98662 -12.55285 -12.29288 -12.14966 -11.56095 -11.43693 -11.20699 -11.06334 -11.01465 -10.78033 -10.63592 -10.33469 -9.99931 -9.58275 -9.28256 -9.14940 -8.84397 -8.51092 -8.30316 -8.25988 -6.10152 -4.12935 1.22874 1.39660 2.90613 3.11371 3.29129 3.35399 3.39857 3.47200 3.75574 4.28524 4.37947 4.44433 4.53375 4.59229 4.81106 4.93969 5.01291 5.17296 5.21783 5.27073 5.37394 5.39726 5.46596 5.68702 5.71454 5.98693 6.23570 6.25739 6.36829 6.40050 6.50521 6.62817 6.71534 6.75174 6.95070 7.17597 7.29976 7.54878 7.61501 7.88781 8.23487 8.37492 8.88882 8.94572 9.51997 11.01488 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028045 B = 0.003028 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.153546 B = 9243.611148 C = 9847.515878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.737 5.737 12 C 0.699 3.301 13 O -0.593 6.593 14 N -0.744 5.744 15 C 0.211 3.789 16 H 0.100 0.900 17 C -0.167 4.167 18 C 0.067 3.933 19 O -0.318 6.318 20 C 0.134 3.866 21 C -0.159 4.159 22 C -0.085 4.085 23 C -0.157 4.157 24 C -0.063 4.063 25 C -0.176 4.176 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.394 0.606 32 H 0.396 0.604 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 -23.083 2.027 23.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.390 5.390 12 C 0.399 3.601 13 O -0.473 6.473 14 N -0.400 5.400 15 C 0.105 3.895 16 H 0.118 0.882 17 C -0.205 4.205 18 C -0.009 4.009 19 O -0.233 6.233 20 C 0.088 3.912 21 C -0.177 4.177 22 C -0.103 4.103 23 C -0.175 4.175 24 C -0.081 4.081 25 C -0.178 4.178 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.227 0.773 32 H 0.230 0.770 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.130 0.870 36 H 0.086 0.914 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.997 -23.081 2.059 23.259 hybrid contribution -0.529 1.184 -0.123 1.302 sum 1.468 -21.898 1.936 22.032 Atomic orbital electron populations 1.69954 1.06096 1.26875 1.50415 1.24992 0.94892 0.99415 0.94989 0.86512 0.79857 0.82987 0.78199 1.20565 1.21179 1.19693 1.21045 0.93270 0.90348 1.51309 0.92211 1.19326 0.94244 0.91074 0.97814 1.21613 0.95651 0.80337 1.00691 1.45571 1.09944 1.05288 1.78183 1.16071 0.85756 0.80496 0.77806 1.90900 1.11570 1.86550 1.58258 1.45167 1.09381 1.04056 1.81383 1.19398 0.95807 0.82330 0.92012 0.88196 1.22513 1.00268 0.94750 1.02960 1.22922 1.01492 0.97259 0.79197 1.85972 1.80125 1.39239 1.17929 1.18690 0.95199 0.86396 0.90884 1.20511 1.04846 1.00339 0.92024 1.20948 0.97649 0.92629 0.99115 1.21126 1.03311 0.96739 0.96309 1.21408 0.93688 1.00270 0.92728 1.20272 1.06944 0.92709 0.97924 0.92850 0.95990 0.95962 0.92718 0.92716 0.77311 0.77011 0.89791 0.88915 0.87048 0.91407 0.85477 0.85610 0.85910 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 2.95 5.61 -4.04 -0.02 2.93 16 11 N -0.74 -12.66 5.56 -65.22 -0.36 -13.02 16 12 C 0.70 11.71 7.13 -86.91 -0.62 11.09 16 13 O -0.59 -12.06 14.27 5.29 0.08 -11.98 16 14 N -0.74 -9.31 4.86 -59.74 -0.29 -9.60 16 15 C 0.21 2.47 2.70 -69.01 -0.19 2.29 16 16 H 0.10 1.33 7.57 -51.93 -0.39 0.94 16 17 C -0.17 -1.33 5.67 -26.48 -0.15 -1.48 16 18 C 0.07 0.51 7.03 37.37 0.26 0.77 16 19 O -0.32 -3.44 10.27 -19.24 -0.20 -3.64 16 20 C 0.13 1.63 6.47 -39.20 -0.25 1.38 16 21 C -0.16 -1.79 9.94 -39.34 -0.39 -2.19 16 22 C -0.09 -0.94 10.04 -39.66 -0.40 -1.34 16 23 C -0.16 -2.00 10.05 -39.61 -0.40 -2.40 16 24 C -0.06 -0.92 9.08 -39.53 -0.36 -1.28 16 25 C -0.18 -2.32 5.56 -104.44 -0.58 -2.90 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.39 5.84 8.49 -40.82 -0.35 5.50 16 32 H 0.40 3.93 8.59 -40.82 -0.35 3.57 16 33 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.14 2.37 4.70 -52.49 -0.25 2.12 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -32.56 332.71 -9.22 -41.78 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.53 Total: 6.55 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -3.65 Total: -6.09 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.08 Total: -47.92 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.12 Total: -15.62 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.56 -9.22 -41.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273021955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.302 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds