Wall clock time and date at job start Tue Mar 31 2020 06:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99532 * 2 1 4 4 H 1.48499 * 109.47588 * 270.00073 * 3 2 1 5 5 H 1.48503 * 109.47212 * 30.00285 * 3 2 1 6 6 H 1.48507 * 109.47003 * 150.00034 * 3 2 1 7 7 C 1.37868 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00481 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99851 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47143 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46645 * 180.02562 * 10 9 7 12 12 C 1.34782 * 119.99542 * 179.97438 * 11 10 9 13 13 O 1.21589 * 119.99858 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99920 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99643 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.43933 * 325.08391 * 15 14 12 17 17 C 1.53075 * 109.39927 * 205.18803 * 15 14 12 18 18 C 1.53408 * 108.29935 * 191.76371 * 17 15 14 19 19 O 1.42824 * 108.37699 * 64.71719 * 18 17 15 20 20 C 1.35841 * 117.86129 * 310.82197 * 19 18 17 21 21 C 1.39150 * 118.50027 * 197.06354 * 20 19 18 22 22 C 1.37961 * 120.21515 * 180.28472 * 21 20 19 23 23 C 1.38298 * 119.96190 * 359.97438 * 22 21 20 24 24 C 1.38105 * 119.97688 * 359.92001 * 23 22 21 25 25 C 1.38368 * 121.80430 * 17.20186 * 20 19 18 26 26 H 0.97000 * 120.00279 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47693 * 59.99873 * 9 7 2 28 28 H 1.09000 * 109.47134 * 299.99759 * 9 7 2 29 29 H 1.08994 * 109.47181 * 59.99963 * 10 9 7 30 30 H 1.09000 * 109.46662 * 299.99747 * 10 9 7 31 31 H 0.97001 * 120.00833 * 359.97438 * 11 10 9 32 32 H 0.97001 * 120.00456 * 359.97438 * 14 12 11 33 33 H 1.09001 * 109.70188 * 311.46410 * 17 15 14 34 34 H 1.09002 * 109.69586 * 72.01989 * 17 15 14 35 35 H 1.08999 * 109.68281 * 184.43746 * 18 17 15 36 36 H 1.08999 * 109.68351 * 304.95704 * 18 17 15 37 37 H 1.08004 * 119.89281 * 0.30666 * 21 20 19 38 38 H 1.08000 * 120.02328 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.00844 * 180.19545 * 23 22 21 40 40 H 1.08001 * 119.83808 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 7 1.5130 -4.9307 -0.0032 12 6 2.1869 -6.0979 -0.0038 13 8 3.4028 -6.0978 -0.0034 14 7 1.5131 -7.2651 -0.0049 15 6 2.2457 -8.5338 -0.0062 16 1 3.1570 -8.4259 -0.5944 17 6 1.3685 -9.6269 -0.6217 18 6 2.0268 -10.9849 -0.3461 19 8 2.0265 -11.2074 1.0647 20 6 2.4819 -10.2086 1.8650 21 6 2.8291 -10.5153 3.1771 22 6 3.2901 -9.5271 4.0224 23 6 3.4086 -8.2272 3.5654 24 6 3.0670 -7.9197 2.2631 25 6 2.6040 -8.9077 1.4098 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6242 -2.5575 0.8880 29 1 2.8714 -3.6046 0.8890 30 1 2.8728 -3.6038 -0.8910 31 1 0.5430 -4.9308 -0.0039 32 1 0.5431 -7.2652 -0.0049 33 1 0.3772 -9.6006 -0.1693 34 1 1.2858 -9.4694 -1.6971 35 1 1.4620 -11.7741 -0.8423 36 1 3.0517 -10.9781 -0.7171 37 1 2.7378 -11.5302 3.5349 38 1 3.5583 -9.7685 5.0403 39 1 3.7723 -7.4537 4.2255 40 1 3.1608 -6.9039 1.9084 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273021955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:31 Heat of formation + Delta-G solvation = -72.492368 kcal Electronic energy + Delta-G solvation = -22581.386565 eV Core-core repulsion = 19166.972667 eV Total energy + Delta-G solvation = -3414.413898 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.03649 -40.72475 -38.41992 -37.11304 -36.22680 -34.85164 -33.11501 -31.60903 -31.26441 -30.91676 -27.05568 -25.86735 -24.65030 -23.44637 -22.88794 -22.01107 -21.15925 -19.51483 -18.78566 -18.41096 -17.71298 -17.49222 -16.94578 -16.51337 -16.48888 -15.99682 -15.49831 -15.35455 -15.18005 -15.05396 -14.63271 -14.30141 -14.18428 -14.09308 -13.43714 -13.21667 -12.95433 -12.94606 -12.52804 -12.45124 -12.32512 -12.18086 -11.77532 -11.68817 -11.63588 -11.49923 -11.20303 -10.60704 -10.38127 -9.85751 -9.76888 -9.16561 -8.24369 -6.34670 0.29295 0.43749 1.41758 1.42282 1.53595 1.70896 2.11291 2.34410 2.41233 2.79837 3.10564 3.30893 3.55469 3.64050 3.76782 4.02955 4.15222 4.20301 4.36766 4.47485 4.50397 4.51481 4.55024 4.60400 4.67771 4.85784 4.93460 4.96175 5.05541 5.28531 5.32051 5.37658 5.49747 5.54134 5.58897 5.63637 5.78224 5.81913 6.00387 6.16692 6.45792 6.78583 7.08529 7.34761 7.55945 8.87549 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028045 B = 0.003028 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.153546 B = 9243.611148 C = 9847.515878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.162 3.838 11 N -0.733 5.733 12 C 0.700 3.300 13 O -0.630 6.630 14 N -0.724 5.724 15 C 0.207 3.793 16 H 0.080 0.920 17 C -0.156 4.156 18 C 0.061 3.939 19 O -0.323 6.323 20 C 0.131 3.869 21 C -0.161 4.161 22 C -0.079 4.079 23 C -0.171 4.171 24 C -0.091 4.091 25 C -0.189 4.189 26 H 0.266 0.734 27 H 0.009 0.991 28 H 0.007 0.993 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.406 0.594 32 H 0.411 0.589 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.147 0.853 36 H 0.071 0.929 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.128 0.872 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.770 -24.776 2.051 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.037 3.963 11 N -0.387 5.387 12 C 0.400 3.600 13 O -0.512 6.512 14 N -0.380 5.380 15 C 0.101 3.899 16 H 0.098 0.902 17 C -0.194 4.194 18 C -0.014 4.014 19 O -0.238 6.238 20 C 0.085 3.915 21 C -0.180 4.180 22 C -0.097 4.097 23 C -0.189 4.189 24 C -0.109 4.109 25 C -0.191 4.191 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.242 0.758 32 H 0.248 0.752 33 H 0.110 0.890 34 H 0.132 0.868 35 H 0.164 0.836 36 H 0.089 0.911 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.146 0.854 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.643 -24.822 2.074 24.963 hybrid contribution -0.437 1.610 -0.120 1.672 sum 1.205 -23.213 1.955 23.326 Atomic orbital electron populations 1.70056 1.07526 1.27995 1.51034 1.25860 0.95793 1.03069 0.94411 0.85452 0.78638 0.78466 0.78541 1.19725 1.20519 1.19073 1.21463 0.93605 0.91913 1.51511 0.92303 1.19122 0.94217 0.91658 0.96316 1.21067 0.94578 0.81032 0.99592 1.45243 1.10402 1.04428 1.78640 1.16118 0.85277 0.81159 0.77402 1.90874 1.13408 1.87138 1.59775 1.44982 1.10102 1.03132 1.79799 1.19563 0.95987 0.82707 0.91617 0.90204 1.22503 0.99618 0.93334 1.03951 1.23252 1.02393 0.97972 0.77746 1.85974 1.79741 1.38668 1.19368 1.18822 0.94848 0.86195 0.91625 1.20892 1.03878 1.01487 0.91713 1.21267 0.96434 0.91527 1.00486 1.21294 1.03683 0.98085 0.95819 1.21298 0.96038 0.99379 0.94187 1.20356 1.07386 0.93104 0.98243 0.92542 0.97265 0.97415 0.93926 0.93721 0.75831 0.75219 0.88953 0.86794 0.83571 0.91113 0.83190 0.82541 0.85449 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.36 13.29 21.44 0.28 -54.07 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -30.66 9.11 25.60 0.23 -30.43 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.24 5.09 29.85 0.15 1.39 16 10 C 0.16 7.04 5.61 86.38 0.48 7.53 16 11 N -0.73 -25.73 5.56 -478.52 -2.66 -28.39 16 12 C 0.70 24.04 7.13 179.05 1.28 25.32 16 13 O -0.63 -26.67 14.27 -4.00 -0.06 -26.72 16 14 N -0.72 -17.97 4.86 -461.17 -2.24 -20.21 16 15 C 0.21 4.76 2.70 44.29 0.12 4.88 16 16 H 0.08 2.17 7.57 -2.39 -0.02 2.15 16 17 C -0.16 -2.12 5.67 30.76 0.17 -1.94 16 18 C 0.06 0.75 7.03 72.12 0.51 1.26 16 19 O -0.32 -6.17 10.27 -91.77 -0.94 -7.12 16 20 C 0.13 3.01 6.47 22.52 0.15 3.15 16 21 C -0.16 -3.31 9.94 22.42 0.22 -3.09 16 22 C -0.08 -1.61 10.04 22.22 0.22 -1.39 16 23 C -0.17 -4.38 10.05 22.25 0.22 -4.16 16 24 C -0.09 -2.75 9.08 22.30 0.20 -2.54 16 25 C -0.19 -4.93 5.56 -19.75 -0.11 -5.04 16 26 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 27 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.41 12.14 8.49 -92.71 -0.79 11.35 16 32 H 0.41 7.69 8.59 -92.71 -0.80 6.90 16 33 H 0.09 1.15 8.11 -2.39 -0.02 1.13 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 39 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.11 3.93 4.70 -2.91 -0.01 3.92 16 Total: -1.00 -71.60 332.71 0.21 -71.39 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.51 Total: 23.57 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 4.32 Total: -4.19 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -4.62 Total: -102.67 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -1.00 Total: -33.84 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -71.60 0.21 -71.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273021955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.103 kcal (2) G-P(sol) polarization free energy of solvation -71.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds