Wall clock time and date at job start Tue Mar 31 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99770 * 2 1 4 4 H 1.48497 * 109.46812 * 240.00134 * 3 2 1 5 5 H 1.48497 * 109.46798 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46971 * 119.99846 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47402 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47441 * 179.97438 * 10 9 7 12 12 C 1.34778 * 119.99999 * 179.97438 * 11 10 9 13 13 O 1.21588 * 120.00006 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99731 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99933 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.43441 * 34.91718 * 15 14 12 17 17 C 1.53073 * 109.40210 * 154.80615 * 15 14 12 18 18 C 1.53405 * 108.29902 * 168.23913 * 17 15 14 19 19 O 1.42831 * 108.38027 * 295.28511 * 18 17 15 20 20 C 1.35844 * 117.85643 * 49.17711 * 19 18 17 21 21 C 1.39154 * 118.50047 * 162.93448 * 20 19 18 22 22 C 1.37965 * 120.21597 * 179.46023 * 21 20 19 23 23 C 1.38292 * 119.95897 * 0.53717 * 22 21 20 24 24 C 1.38105 * 119.98272 * 359.56747 * 23 22 21 25 25 C 1.38373 * 121.80992 * 342.79911 * 20 19 18 26 26 H 0.96995 * 120.00222 * 0.02562 * 1 2 3 27 27 H 1.09011 * 109.47320 * 59.99855 * 9 7 2 28 28 H 1.09000 * 109.47499 * 300.00095 * 9 7 2 29 29 H 1.08997 * 109.47072 * 59.99887 * 10 9 7 30 30 H 1.09004 * 109.46779 * 299.99775 * 10 9 7 31 31 H 0.96996 * 119.99746 * 0.02562 * 11 10 9 32 32 H 0.97000 * 120.00431 * 0.02562 * 14 12 11 33 33 H 1.08997 * 109.69797 * 287.94728 * 17 15 14 34 34 H 1.09002 * 109.69604 * 48.50044 * 17 15 14 35 35 H 1.08999 * 109.68491 * 55.00600 * 18 17 15 36 36 H 1.09003 * 109.68153 * 175.56546 * 18 17 15 37 37 H 1.08000 * 119.88769 * 359.69487 * 21 20 19 38 38 H 1.07995 * 120.02241 * 180.28516 * 22 21 20 39 39 H 1.08002 * 120.01156 * 179.85422 * 23 22 21 40 40 H 1.07998 * 119.84038 * 180.17395 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1869 -6.0980 0.0007 13 8 3.4028 -6.0979 0.0003 14 7 1.5130 -7.2652 0.0008 15 6 2.2456 -8.5339 -0.0002 16 1 3.1572 -8.4268 0.5875 17 6 1.3689 -9.6278 0.6146 18 6 2.0269 -10.9854 0.3367 19 8 2.0255 -11.2061 -1.0744 20 6 2.4803 -10.2063 -1.8737 21 6 2.8266 -10.5112 -3.1866 22 6 3.2819 -9.5209 -4.0324 23 6 3.4057 -8.2227 -3.5723 24 6 3.0650 -7.9168 -2.2693 25 6 2.6027 -8.9059 -1.4170 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6042 -0.8895 31 1 0.5430 -4.9308 0.0011 32 1 0.5430 -7.2653 0.0007 33 1 1.2876 -9.4721 1.6903 34 1 0.3769 -9.6004 0.1635 35 1 3.0523 -10.9789 0.7062 36 1 1.4625 -11.7752 0.8324 37 1 2.7349 -11.5257 -3.5456 38 1 3.5454 -9.7602 -5.0520 39 1 3.7643 -7.4473 -4.2330 40 1 3.1599 -6.9017 -1.9132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273021958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:35 Heat of formation + Delta-G solvation = -50.065974 kcal Electronic energy + Delta-G solvation = -22580.488072 eV Core-core repulsion = 19167.046656 eV Total energy + Delta-G solvation = -3413.441417 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.08603 -39.46884 -37.55992 -35.87885 -34.66871 -32.94562 -31.95351 -30.70003 -30.22717 -29.30423 -25.66880 -24.42853 -23.78617 -22.41747 -21.11821 -20.62368 -20.29694 -18.24321 -17.79801 -16.81600 -16.57999 -16.32901 -15.81876 -15.23801 -15.03063 -14.54724 -14.39247 -14.16901 -13.86451 -13.77750 -13.55367 -13.25822 -12.98686 -12.55290 -12.28664 -12.14735 -11.56360 -11.43768 -11.21264 -11.05738 -11.00374 -10.77976 -10.65284 -10.32634 -10.00274 -9.58012 -9.29566 -9.14993 -8.84362 -8.50709 -8.30196 -8.26017 -6.09938 -4.12826 1.22840 1.39654 2.90663 3.11361 3.31016 3.34836 3.38413 3.47222 3.75515 4.28543 4.37994 4.44466 4.53405 4.59256 4.81088 4.93956 5.01302 5.17248 5.21796 5.27145 5.37380 5.39744 5.46593 5.68715 5.71437 5.98694 6.23547 6.25781 6.36824 6.40044 6.50510 6.62803 6.71507 6.75193 6.95068 7.17617 7.29949 7.54754 7.61567 7.88839 8.23581 8.37539 8.88845 8.94502 9.52012 11.01678 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028034 B = 0.003029 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.555135 B = 9242.173226 C = 9845.978009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.737 5.737 12 C 0.699 3.301 13 O -0.593 6.593 14 N -0.744 5.744 15 C 0.210 3.790 16 H 0.100 0.900 17 C -0.167 4.167 18 C 0.067 3.933 19 O -0.318 6.318 20 C 0.134 3.866 21 C -0.159 4.159 22 C -0.085 4.085 23 C -0.157 4.157 24 C -0.063 4.063 25 C -0.176 4.176 26 H 0.263 0.737 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.394 0.606 32 H 0.396 0.604 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 -23.066 -2.046 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.390 5.390 12 C 0.399 3.601 13 O -0.473 6.473 14 N -0.400 5.400 15 C 0.104 3.896 16 H 0.118 0.882 17 C -0.205 4.205 18 C -0.009 4.009 19 O -0.233 6.233 20 C 0.088 3.912 21 C -0.177 4.177 22 C -0.103 4.103 23 C -0.175 4.175 24 C -0.081 4.081 25 C -0.178 4.178 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.227 0.773 32 H 0.230 0.770 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.971 -23.062 -2.072 23.239 hybrid contribution -0.516 1.179 0.109 1.292 sum 1.455 -21.883 -1.963 22.019 Atomic orbital electron populations 1.69944 1.06096 1.26994 1.50318 1.24993 0.94891 0.99402 0.94970 0.86567 0.79515 0.82629 0.78803 1.20088 1.21255 1.20095 1.21010 0.93236 0.90364 1.51458 0.92261 1.19318 0.94237 0.91054 0.97807 1.21613 0.95655 0.80338 1.00689 1.45569 1.09945 1.05289 1.78182 1.16069 0.85754 0.80495 0.77806 1.90899 1.11570 1.86549 1.58260 1.45168 1.09381 1.04056 1.81383 1.19399 0.95818 0.82332 0.92004 0.88194 1.22511 1.00273 0.94745 1.02959 1.22926 1.01489 0.97270 0.79186 1.85975 1.80129 1.39220 1.17943 1.18692 0.95201 0.86382 0.90897 1.20514 1.04892 1.00318 0.91995 1.20946 0.97662 0.92632 0.99102 1.21125 1.03306 0.96765 0.96285 1.21407 0.93679 1.00253 0.92760 1.20273 1.06949 0.92713 0.97909 0.92788 0.95979 0.95985 0.92713 0.92724 0.77312 0.77013 0.88919 0.89788 0.91406 0.87045 0.85478 0.85609 0.85911 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 10 C 0.14 2.95 5.61 -4.04 -0.02 2.93 16 11 N -0.74 -12.67 5.56 -65.23 -0.36 -13.03 16 12 C 0.70 11.72 7.13 -86.92 -0.62 11.10 16 13 O -0.59 -12.06 14.27 5.29 0.08 -11.99 16 14 N -0.74 -9.32 4.86 -59.74 -0.29 -9.61 16 15 C 0.21 2.47 2.70 -69.01 -0.19 2.29 16 16 H 0.10 1.33 7.57 -51.93 -0.39 0.94 16 17 C -0.17 -1.33 5.67 -26.48 -0.15 -1.48 16 18 C 0.07 0.51 7.03 37.37 0.26 0.77 16 19 O -0.32 -3.44 10.27 -19.25 -0.20 -3.64 16 20 C 0.13 1.63 6.47 -39.19 -0.25 1.38 16 21 C -0.16 -1.79 9.94 -39.34 -0.39 -2.19 16 22 C -0.09 -0.94 10.04 -39.66 -0.40 -1.34 16 23 C -0.16 -2.00 10.04 -39.61 -0.40 -2.40 16 24 C -0.06 -0.92 9.08 -39.53 -0.36 -1.28 16 25 C -0.18 -2.32 5.56 -104.44 -0.58 -2.90 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.39 5.85 8.49 -40.82 -0.35 5.50 16 32 H 0.40 3.93 8.59 -40.82 -0.35 3.58 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.14 2.37 4.70 -52.49 -0.25 2.12 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -32.55 332.71 -9.22 -41.77 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.53 Total: 6.60 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -3.65 Total: -6.10 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.08 Total: -47.95 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.12 Total: -15.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.55 -9.22 -41.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273021958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.298 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds