Wall clock time and date at job start Tue Mar 31 2020 06:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99770 * 2 1 4 4 H 1.48497 * 109.46812 * 240.00134 * 3 2 1 5 5 H 1.48497 * 109.46798 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46971 * 119.99846 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47402 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47441 * 179.97438 * 10 9 7 12 12 C 1.34778 * 119.99999 * 179.97438 * 11 10 9 13 13 O 1.21588 * 120.00006 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99731 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99933 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.43441 * 34.91718 * 15 14 12 17 17 C 1.53073 * 109.40210 * 154.80615 * 15 14 12 18 18 C 1.53405 * 108.29902 * 168.23913 * 17 15 14 19 19 O 1.42831 * 108.38027 * 295.28511 * 18 17 15 20 20 C 1.35844 * 117.85643 * 49.17711 * 19 18 17 21 21 C 1.39154 * 118.50047 * 162.93448 * 20 19 18 22 22 C 1.37965 * 120.21597 * 179.46023 * 21 20 19 23 23 C 1.38292 * 119.95897 * 0.53717 * 22 21 20 24 24 C 1.38105 * 119.98272 * 359.56747 * 23 22 21 25 25 C 1.38373 * 121.80992 * 342.79911 * 20 19 18 26 26 H 0.96995 * 120.00222 * 0.02562 * 1 2 3 27 27 H 1.09011 * 109.47320 * 59.99855 * 9 7 2 28 28 H 1.09000 * 109.47499 * 300.00095 * 9 7 2 29 29 H 1.08997 * 109.47072 * 59.99887 * 10 9 7 30 30 H 1.09004 * 109.46779 * 299.99775 * 10 9 7 31 31 H 0.96996 * 119.99746 * 0.02562 * 11 10 9 32 32 H 0.97000 * 120.00431 * 0.02562 * 14 12 11 33 33 H 1.08997 * 109.69797 * 287.94728 * 17 15 14 34 34 H 1.09002 * 109.69604 * 48.50044 * 17 15 14 35 35 H 1.08999 * 109.68491 * 55.00600 * 18 17 15 36 36 H 1.09003 * 109.68153 * 175.56546 * 18 17 15 37 37 H 1.08000 * 119.88769 * 359.69487 * 21 20 19 38 38 H 1.07995 * 120.02241 * 180.28516 * 22 21 20 39 39 H 1.08002 * 120.01156 * 179.85422 * 23 22 21 40 40 H 1.07998 * 119.84038 * 180.17395 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1869 -6.0980 0.0007 13 8 3.4028 -6.0979 0.0003 14 7 1.5130 -7.2652 0.0008 15 6 2.2456 -8.5339 -0.0002 16 1 3.1572 -8.4268 0.5875 17 6 1.3689 -9.6278 0.6146 18 6 2.0269 -10.9854 0.3367 19 8 2.0255 -11.2061 -1.0744 20 6 2.4803 -10.2063 -1.8737 21 6 2.8266 -10.5112 -3.1866 22 6 3.2819 -9.5209 -4.0324 23 6 3.4057 -8.2227 -3.5723 24 6 3.0650 -7.9168 -2.2693 25 6 2.6027 -8.9059 -1.4170 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6042 -0.8895 31 1 0.5430 -4.9308 0.0011 32 1 0.5430 -7.2653 0.0007 33 1 1.2876 -9.4721 1.6903 34 1 0.3769 -9.6004 0.1635 35 1 3.0523 -10.9789 0.7062 36 1 1.4625 -11.7752 0.8324 37 1 2.7349 -11.5257 -3.5456 38 1 3.5454 -9.7602 -5.0520 39 1 3.7643 -7.4473 -4.2330 40 1 3.1599 -6.9017 -1.9132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273021958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:34 Heat of formation + Delta-G solvation = -72.467056 kcal Electronic energy + Delta-G solvation = -22581.459456 eV Core-core repulsion = 19167.046656 eV Total energy + Delta-G solvation = -3414.412800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.03614 -40.72481 -38.41988 -37.11319 -36.22701 -34.85106 -33.11518 -31.60918 -31.26482 -30.91691 -27.05487 -25.86677 -24.65006 -23.44639 -22.88714 -22.01148 -21.15945 -19.51502 -18.78549 -18.40858 -17.71272 -17.49154 -16.94546 -16.51508 -16.49117 -15.99730 -15.49729 -15.35477 -15.18008 -15.05483 -14.63252 -14.29451 -14.18383 -14.09405 -13.43737 -13.22248 -12.95203 -12.93173 -12.53957 -12.45300 -12.32315 -12.17546 -11.77596 -11.68853 -11.63675 -11.50721 -11.20841 -10.60220 -10.38172 -9.85807 -9.76854 -9.16600 -8.24214 -6.34653 0.29249 0.43736 1.41743 1.44212 1.51921 1.70858 2.11288 2.34453 2.41318 2.79744 3.10625 3.30885 3.55455 3.64042 3.76799 4.02955 4.15171 4.20259 4.36770 4.47470 4.50369 4.51439 4.55005 4.60393 4.67752 4.85740 4.93431 4.96176 5.05529 5.28474 5.31988 5.37647 5.49614 5.54090 5.58868 5.63608 5.78148 5.81880 6.00379 6.16704 6.45751 6.78430 7.08516 7.34712 7.55924 8.87521 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028034 B = 0.003029 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.555135 B = 9242.173226 C = 9845.978009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.733 5.733 12 C 0.700 3.300 13 O -0.630 6.630 14 N -0.724 5.724 15 C 0.207 3.793 16 H 0.080 0.920 17 C -0.156 4.156 18 C 0.061 3.939 19 O -0.323 6.323 20 C 0.131 3.869 21 C -0.161 4.161 22 C -0.079 4.079 23 C -0.171 4.171 24 C -0.091 4.091 25 C -0.189 4.189 26 H 0.266 0.734 27 H 0.007 0.993 28 H 0.009 0.991 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.406 0.594 32 H 0.411 0.589 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.128 0.872 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 -24.760 -2.082 24.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.037 3.963 11 N -0.387 5.387 12 C 0.400 3.600 13 O -0.512 6.512 14 N -0.380 5.380 15 C 0.101 3.899 16 H 0.098 0.902 17 C -0.194 4.194 18 C -0.014 4.014 19 O -0.238 6.238 20 C 0.085 3.915 21 C -0.180 4.180 22 C -0.097 4.097 23 C -0.189 4.189 24 C -0.109 4.109 25 C -0.191 4.191 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.242 0.758 32 H 0.248 0.752 33 H 0.132 0.868 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.164 0.836 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.146 0.854 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.634 -24.805 -2.101 24.947 hybrid contribution -0.429 1.605 0.109 1.665 sum 1.205 -23.200 -1.992 23.317 Atomic orbital electron populations 1.70049 1.07535 1.28072 1.50956 1.25864 0.95791 1.03068 0.94383 0.85507 0.78320 0.78141 0.79151 1.19363 1.20571 1.19294 1.21441 0.93617 0.91926 1.51647 0.92281 1.19115 0.94213 0.91649 0.96304 1.21067 0.94579 0.81031 0.99594 1.45241 1.10404 1.04430 1.78639 1.16116 0.85277 0.81157 0.77401 1.90873 1.13407 1.87137 1.59776 1.44983 1.10102 1.03134 1.79799 1.19564 0.95995 0.82710 0.91610 0.90203 1.22501 0.99625 0.93326 1.03951 1.23256 1.02388 0.97985 0.77733 1.85977 1.79746 1.38646 1.19384 1.18825 0.94850 0.86183 0.91636 1.20895 1.03923 1.01466 0.91686 1.21265 0.96438 0.91530 1.00480 1.21294 1.03680 0.98109 0.95794 1.21297 0.96027 0.99366 0.94215 1.20357 1.07392 0.93106 0.98229 0.92529 0.97438 0.97269 0.93724 0.93917 0.75834 0.75221 0.86799 0.88948 0.91114 0.83566 0.83192 0.82542 0.85449 0.87415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.41 13.29 21.45 0.28 -54.13 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -30.75 9.11 25.60 0.23 -30.52 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.25 5.09 29.85 0.15 1.40 16 10 C 0.16 7.04 5.61 86.38 0.48 7.53 16 11 N -0.73 -25.74 5.56 -478.54 -2.66 -28.40 16 12 C 0.70 24.05 7.13 179.05 1.28 25.33 16 13 O -0.63 -26.67 14.27 -3.99 -0.06 -26.72 16 14 N -0.72 -17.97 4.86 -461.18 -2.24 -20.21 16 15 C 0.21 4.76 2.70 44.29 0.12 4.88 16 16 H 0.08 2.17 7.57 -2.39 -0.02 2.15 16 17 C -0.16 -2.12 5.67 30.75 0.17 -1.94 16 18 C 0.06 0.75 7.03 72.12 0.51 1.26 16 19 O -0.32 -6.17 10.27 -91.80 -0.94 -7.12 16 20 C 0.13 3.01 6.47 22.52 0.15 3.15 16 21 C -0.16 -3.31 9.94 22.43 0.22 -3.09 16 22 C -0.08 -1.61 10.04 22.22 0.22 -1.39 16 23 C -0.17 -4.38 10.04 22.25 0.22 -4.16 16 24 C -0.09 -2.75 9.08 22.30 0.20 -2.54 16 25 C -0.19 -4.93 5.56 -19.75 -0.11 -5.04 16 26 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 27 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 28 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.41 12.15 8.49 -92.71 -0.79 11.36 16 32 H 0.41 7.70 8.59 -92.71 -0.80 6.90 16 33 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.15 8.11 -2.39 -0.02 1.13 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 39 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.11 3.93 4.70 -2.91 -0.01 3.91 16 Total: -1.00 -71.59 332.71 0.21 -71.38 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.51 Total: 23.72 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 4.32 Total: -4.24 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -4.62 Total: -102.74 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -1.00 Total: -33.84 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -71.59 0.21 -71.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273021958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.089 kcal (2) G-P(sol) polarization free energy of solvation -71.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds