Wall clock time and date at job start Tue Mar 31 2020 06:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00300 * 2 1 4 4 H 1.48492 * 109.47195 * 239.99884 * 3 2 1 5 5 H 1.48498 * 109.46968 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47153 * 119.99784 * 3 2 1 7 7 C 1.37879 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99634 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47081 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47048 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00027 * 179.97438 * 11 10 9 13 13 O 1.21582 * 119.99991 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00127 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99976 * 180.02562 * 14 12 11 16 16 H 1.09000 * 109.69505 * 34.44686 * 15 14 12 17 17 C 1.53406 * 109.72614 * 273.87511 * 15 14 12 18 18 O 1.42839 * 108.37595 * 175.58989 * 17 15 14 19 19 C 1.35840 * 117.91867 * 48.98792 * 18 17 15 20 20 C 1.39144 * 118.49891 * 162.60557 * 19 18 17 21 21 C 1.37973 * 120.21556 * 179.80842 * 20 19 18 22 22 C 1.38293 * 119.95529 * 0.29554 * 21 20 19 23 23 C 1.38104 * 119.98565 * 0.10127 * 22 21 20 24 24 C 1.38378 * 121.80214 * 343.16503 * 19 18 17 25 25 C 1.50764 * 121.40968 * 0.07743 * 24 19 18 26 26 H 0.97003 * 119.99621 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47026 * 60.00163 * 9 7 2 28 28 H 1.08997 * 109.47364 * 299.99999 * 9 7 2 29 29 H 1.08996 * 109.47075 * 60.00171 * 10 9 7 30 30 H 1.08997 * 109.47003 * 300.00199 * 10 9 7 31 31 H 0.96996 * 120.00538 * 0.02562 * 11 10 9 32 32 H 0.96997 * 119.99861 * 0.02562 * 14 12 11 33 33 H 1.08993 * 109.68607 * 295.30788 * 17 15 14 34 34 H 1.08995 * 109.68507 * 55.83607 * 17 15 14 35 35 H 1.08002 * 119.89570 * 0.09286 * 20 19 18 36 36 H 1.07998 * 120.02386 * 180.27041 * 21 20 19 37 37 H 1.08003 * 120.00895 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.84633 * 179.97438 * 23 22 21 39 39 H 1.09005 * 109.43534 * 102.45869 * 25 24 19 40 40 H 1.09003 * 109.43883 * 222.33001 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0024 12 6 2.1865 -6.0980 0.0031 13 8 3.4023 -6.0981 0.0036 14 7 1.5126 -7.2652 0.0031 15 6 2.2451 -8.5339 0.0044 16 1 3.1612 -8.4286 0.5856 17 6 2.5897 -8.9343 -1.4359 18 8 3.3899 -10.1168 -1.3953 19 6 2.9575 -11.1514 -0.6286 20 6 3.4985 -12.4139 -0.8509 21 6 3.0878 -13.4891 -0.0900 22 6 2.1311 -13.3141 0.8932 23 6 1.5861 -12.0640 1.1111 24 6 1.9937 -10.9811 0.3496 25 6 1.3713 -9.6335 0.6133 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8902 29 1 2.8711 -3.6040 0.8923 30 1 2.8725 -3.6048 -0.8877 31 1 0.5427 -4.9308 0.0016 32 1 0.5426 -7.2652 0.0023 33 1 1.6729 -9.1304 -1.9918 34 1 3.1461 -8.1302 -1.9173 35 1 4.2456 -12.5519 -1.6185 36 1 3.5129 -14.4668 -0.2622 37 1 1.8093 -14.1550 1.4896 38 1 0.8388 -11.9299 1.8791 39 1 0.3787 -9.5982 0.1642 40 1 1.2880 -9.4765 1.6887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273120786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:38 Heat of formation + Delta-G solvation = -54.820365 kcal Electronic energy + Delta-G solvation = -21942.787722 eV Core-core repulsion = 18529.140140 eV Total energy + Delta-G solvation = -3413.647582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.06859 -39.57019 -37.72177 -35.83598 -34.70914 -33.04015 -32.59195 -30.58910 -30.17369 -28.86103 -26.07145 -24.86284 -23.50648 -22.73790 -21.12027 -20.64105 -20.40579 -18.13407 -18.07741 -17.06647 -16.40385 -16.09632 -15.75256 -15.37530 -14.88364 -14.67195 -14.53901 -14.23474 -14.09290 -13.78064 -13.53605 -13.32839 -13.17353 -13.15469 -12.28776 -12.09909 -11.75702 -11.62656 -11.21544 -11.10748 -11.00096 -10.91785 -10.66124 -10.33612 -10.02194 -9.58457 -9.29724 -9.19938 -9.09418 -8.52668 -8.41093 -8.29591 -6.10351 -4.13089 1.00594 1.15043 2.72932 3.18711 3.31011 3.34733 3.38469 3.45175 3.48438 4.27062 4.34151 4.39992 4.47284 4.59084 4.67563 4.82284 4.86655 5.04915 5.14203 5.20942 5.26771 5.32263 5.42707 5.60028 5.70893 5.75870 6.00163 6.15083 6.22754 6.25273 6.36715 6.37605 6.53532 6.74606 6.93415 7.12086 7.23045 7.53928 7.60974 7.88470 8.22614 8.35613 8.87598 8.93871 9.51698 11.01232 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.053467 B = 0.002344 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.557480 B =11941.300839 C =12221.051811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.736 5.736 12 C 0.698 3.302 13 O -0.593 6.593 14 N -0.745 5.745 15 C 0.133 3.867 16 H 0.103 0.897 17 C 0.052 3.948 18 O -0.309 6.309 19 C 0.133 3.867 20 C -0.150 4.150 21 C -0.088 4.088 22 C -0.155 4.155 23 C -0.082 4.082 24 C -0.157 4.157 25 C -0.085 4.085 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.394 0.606 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 -26.453 0.199 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.389 5.389 12 C 0.398 3.602 13 O -0.471 6.471 14 N -0.403 5.403 15 C 0.026 3.974 16 H 0.121 0.879 17 C -0.025 4.025 18 O -0.222 6.222 19 C 0.088 3.912 20 C -0.168 4.168 21 C -0.106 4.106 22 C -0.173 4.173 23 C -0.100 4.100 24 C -0.158 4.158 25 C -0.122 4.122 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.227 0.773 32 H 0.231 0.769 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.102 0.898 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.663 -26.254 0.077 26.263 hybrid contribution -0.769 1.046 0.114 1.303 sum -0.107 -25.208 0.191 25.209 Atomic orbital electron populations 1.69946 1.06088 1.26984 1.50335 1.24999 0.94910 0.99425 0.94982 0.86559 0.79503 0.82590 0.78808 1.20095 1.21265 1.20091 1.21010 0.93247 0.90348 1.51429 0.92251 1.19320 0.94237 0.91055 0.97808 1.21622 0.95668 0.80290 1.00750 1.45546 1.09919 1.05257 1.78204 1.16081 0.85695 0.80470 0.77985 1.90915 1.11649 1.86505 1.58078 1.45028 1.09376 1.04034 1.81829 1.21260 0.96970 0.82588 0.96572 0.87933 1.23493 0.96043 0.85511 0.97425 1.86059 1.48892 1.23008 1.64229 1.18813 0.93978 0.87843 0.90562 1.20626 1.03574 0.89853 1.02775 1.20945 0.96566 0.98196 0.94877 1.21012 0.99098 0.97299 0.99927 1.20894 0.98964 0.91896 0.98250 1.19709 1.01016 0.96116 0.99000 1.20753 0.98783 0.90013 1.02663 0.92797 0.95963 0.95974 0.92700 0.92677 0.77303 0.76913 0.91629 0.86702 0.85163 0.85454 0.85871 0.85724 0.89790 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 10 C 0.14 2.95 5.61 -4.04 -0.02 2.92 16 11 N -0.74 -12.52 5.56 -65.23 -0.36 -12.89 16 12 C 0.70 11.68 8.55 -86.92 -0.74 10.94 16 13 O -0.59 -12.42 16.00 5.29 0.08 -12.34 16 14 N -0.74 -8.76 5.10 -58.43 -0.30 -9.05 16 15 C 0.13 1.51 2.69 -67.68 -0.18 1.33 16 16 H 0.10 1.45 7.57 -51.93 -0.39 1.05 16 17 C 0.05 0.59 6.63 37.37 0.25 0.84 16 18 O -0.31 -3.88 10.27 -19.24 -0.20 -4.07 16 19 C 0.13 1.50 6.47 -39.19 -0.25 1.24 16 20 C -0.15 -1.45 9.94 -39.34 -0.39 -1.84 16 21 C -0.09 -0.69 10.04 -39.66 -0.40 -1.09 16 22 C -0.16 -1.19 10.04 -39.61 -0.40 -1.59 16 23 C -0.08 -0.68 9.67 -39.53 -0.38 -1.06 16 24 C -0.16 -1.54 5.75 -104.44 -0.60 -2.14 16 25 C -0.08 -0.73 5.36 -27.81 -0.15 -0.88 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.39 5.66 8.49 -40.82 -0.35 5.31 16 32 H 0.40 3.43 8.59 -40.82 -0.35 3.08 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 339.50 15.07 5.12 5.12 Total: -1.00 -32.78 339.50 -9.47 -42.25 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.70 Total: 4.23 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -3.82 Total: -4.31 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.08 Total: -47.19 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.11 Total: -16.41 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.78 -9.47 -42.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273120786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.571 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds