Wall clock time and date at job start Tue Mar 31 2020 06:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00300 * 2 1 4 4 H 1.48492 * 109.47195 * 239.99884 * 3 2 1 5 5 H 1.48498 * 109.46968 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47153 * 119.99784 * 3 2 1 7 7 C 1.37879 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99634 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47081 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47048 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00027 * 179.97438 * 11 10 9 13 13 O 1.21582 * 119.99991 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00127 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99976 * 180.02562 * 14 12 11 16 16 H 1.09000 * 109.69505 * 34.44686 * 15 14 12 17 17 C 1.53406 * 109.72614 * 273.87511 * 15 14 12 18 18 O 1.42839 * 108.37595 * 175.58989 * 17 15 14 19 19 C 1.35840 * 117.91867 * 48.98792 * 18 17 15 20 20 C 1.39144 * 118.49891 * 162.60557 * 19 18 17 21 21 C 1.37973 * 120.21556 * 179.80842 * 20 19 18 22 22 C 1.38293 * 119.95529 * 0.29554 * 21 20 19 23 23 C 1.38104 * 119.98565 * 0.10127 * 22 21 20 24 24 C 1.38378 * 121.80214 * 343.16503 * 19 18 17 25 25 C 1.50764 * 121.40968 * 0.07743 * 24 19 18 26 26 H 0.97003 * 119.99621 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47026 * 60.00163 * 9 7 2 28 28 H 1.08997 * 109.47364 * 299.99999 * 9 7 2 29 29 H 1.08996 * 109.47075 * 60.00171 * 10 9 7 30 30 H 1.08997 * 109.47003 * 300.00199 * 10 9 7 31 31 H 0.96996 * 120.00538 * 0.02562 * 11 10 9 32 32 H 0.96997 * 119.99861 * 0.02562 * 14 12 11 33 33 H 1.08993 * 109.68607 * 295.30788 * 17 15 14 34 34 H 1.08995 * 109.68507 * 55.83607 * 17 15 14 35 35 H 1.08002 * 119.89570 * 0.09286 * 20 19 18 36 36 H 1.07998 * 120.02386 * 180.27041 * 21 20 19 37 37 H 1.08003 * 120.00895 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.84633 * 179.97438 * 23 22 21 39 39 H 1.09005 * 109.43534 * 102.45869 * 25 24 19 40 40 H 1.09003 * 109.43883 * 222.33001 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0024 12 6 2.1865 -6.0980 0.0031 13 8 3.4023 -6.0981 0.0036 14 7 1.5126 -7.2652 0.0031 15 6 2.2451 -8.5339 0.0044 16 1 3.1612 -8.4286 0.5856 17 6 2.5897 -8.9343 -1.4359 18 8 3.3899 -10.1168 -1.3953 19 6 2.9575 -11.1514 -0.6286 20 6 3.4985 -12.4139 -0.8509 21 6 3.0878 -13.4891 -0.0900 22 6 2.1311 -13.3141 0.8932 23 6 1.5861 -12.0640 1.1111 24 6 1.9937 -10.9811 0.3496 25 6 1.3713 -9.6335 0.6133 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8902 29 1 2.8711 -3.6040 0.8923 30 1 2.8725 -3.6048 -0.8877 31 1 0.5427 -4.9308 0.0016 32 1 0.5426 -7.2652 0.0023 33 1 1.6729 -9.1304 -1.9918 34 1 3.1461 -8.1302 -1.9173 35 1 4.2456 -12.5519 -1.6185 36 1 3.5129 -14.4668 -0.2622 37 1 1.8093 -14.1550 1.4896 38 1 0.8388 -11.9299 1.8791 39 1 0.3787 -9.5982 0.1642 40 1 1.2880 -9.4765 1.6887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273120786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:38 Heat of formation + Delta-G solvation = -77.050974 kcal Electronic energy + Delta-G solvation = -21943.751714 eV Core-core repulsion = 18529.140140 eV Total energy + Delta-G solvation = -3414.611574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.92439 -40.83687 -38.48257 -37.03321 -36.26927 -34.84780 -33.66282 -31.68167 -31.22966 -30.13375 -26.85671 -26.70223 -24.48352 -23.48317 -22.86281 -21.99567 -21.26320 -19.45272 -18.85081 -18.44731 -17.95311 -17.09470 -16.65492 -16.64139 -16.45004 -16.00714 -15.58962 -15.27000 -15.17758 -14.91754 -14.75027 -14.39954 -14.24329 -14.07261 -13.99732 -13.21384 -12.94779 -12.76264 -12.54053 -12.50408 -12.38517 -12.21202 -11.88071 -11.72012 -11.67148 -11.50682 -11.22996 -10.59816 -10.41549 -9.82003 -9.73690 -9.12699 -8.23581 -6.33541 0.36044 0.47123 1.42155 1.44595 1.51606 1.58337 2.08855 2.32007 2.42153 2.80789 3.11291 3.28255 3.48520 3.56535 3.84196 3.88341 4.03251 4.26608 4.36030 4.44039 4.47315 4.52611 4.53343 4.61073 4.68490 4.83474 4.87914 4.91110 5.10076 5.29888 5.33946 5.36217 5.50503 5.51433 5.60485 5.61071 5.79045 5.88290 5.99846 6.17757 6.44476 6.79412 7.09049 7.35570 7.54766 8.87978 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.053467 B = 0.002344 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.557480 B =11941.300839 C =12221.051811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.729 5.729 12 C 0.699 3.301 13 O -0.637 6.637 14 N -0.720 5.720 15 C 0.136 3.864 16 H 0.071 0.929 17 C 0.054 3.946 18 O -0.331 6.331 19 C 0.100 3.900 20 C -0.166 4.166 21 C -0.088 4.088 22 C -0.153 4.153 23 C -0.086 4.086 24 C -0.167 4.167 25 C -0.075 4.075 26 H 0.266 0.734 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.409 0.591 32 H 0.417 0.583 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.132 0.868 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.109 0.891 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.485 -27.896 0.901 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.384 5.384 12 C 0.399 3.601 13 O -0.519 6.519 14 N -0.378 5.378 15 C 0.029 3.971 16 H 0.089 0.911 17 C -0.022 4.022 18 O -0.244 6.244 19 C 0.056 3.944 20 C -0.184 4.184 21 C -0.106 4.106 22 C -0.171 4.171 23 C -0.104 4.104 24 C -0.169 4.169 25 C -0.112 4.112 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.245 0.755 32 H 0.255 0.745 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.149 0.851 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.127 0.873 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.366 -27.748 0.782 27.761 hybrid contribution -0.470 1.354 -0.093 1.436 sum -0.837 -26.394 0.689 26.416 Atomic orbital electron populations 1.70046 1.07460 1.28033 1.50967 1.25857 0.95817 1.03030 0.94462 0.85514 0.78315 0.78217 0.79102 1.19408 1.20591 1.19388 1.21440 0.93597 0.91961 1.51574 0.92358 1.19121 0.94212 0.91531 0.96450 1.21084 0.94643 0.81081 0.99632 1.45188 1.10495 1.04249 1.78469 1.16156 0.85133 0.81278 0.77562 1.90891 1.13824 1.87213 1.59927 1.44739 1.10273 1.02688 1.80110 1.21236 0.96484 0.82889 0.96463 0.91095 1.23397 0.96360 0.85066 0.97421 1.86012 1.49746 1.23547 1.65094 1.19153 0.95640 0.87925 0.91721 1.20860 1.03964 0.90071 1.03518 1.21291 0.96341 0.98687 0.94305 1.21417 0.98208 0.97983 0.99525 1.21217 0.99268 0.91612 0.98269 1.19887 1.00941 0.97058 0.98991 1.20728 0.99012 0.88215 1.03253 0.92548 0.97174 0.97191 0.93872 0.93804 0.75535 0.74548 0.89626 0.88944 0.85051 0.82946 0.83162 0.83347 0.87296 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.88 13.29 21.45 0.28 -53.59 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -30.48 9.11 25.60 0.23 -30.25 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.22 5.09 29.85 0.15 1.37 16 10 C 0.16 6.87 5.61 86.38 0.48 7.36 16 11 N -0.73 -24.68 5.56 -478.55 -2.66 -27.34 16 12 C 0.70 23.38 8.55 179.05 1.53 24.91 16 13 O -0.64 -27.38 16.00 -3.97 -0.06 -27.45 16 14 N -0.72 -16.19 5.10 -457.05 -2.33 -18.52 16 15 C 0.14 3.04 2.69 45.15 0.12 3.16 16 16 H 0.07 2.08 7.57 -2.39 -0.02 2.06 16 17 C 0.05 1.26 6.63 72.12 0.48 1.74 16 18 O -0.33 -8.58 10.27 -91.75 -0.94 -9.52 16 19 C 0.10 2.23 6.47 22.52 0.15 2.37 16 20 C -0.17 -3.13 9.94 22.42 0.22 -2.90 16 21 C -0.09 -1.22 10.04 22.22 0.22 -0.99 16 22 C -0.15 -1.89 10.04 22.25 0.22 -1.66 16 23 C -0.09 -1.18 9.67 22.30 0.22 -0.97 16 24 C -0.17 -3.02 5.75 -19.75 -0.11 -3.13 16 25 C -0.07 -1.14 5.36 29.89 0.16 -0.98 16 26 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.41 11.37 8.49 -92.71 -0.79 10.58 16 32 H 0.42 6.22 8.59 -92.71 -0.80 5.42 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.11 1.14 8.10 -2.38 -0.02 1.12 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -71.95 339.50 0.33 -71.62 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.52 Total: 18.35 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 4.54 Total: 0.88 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -4.71 Total: -99.45 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.01 Total: -36.97 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -71.95 0.33 -71.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273120786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.436 kcal (2) G-P(sol) polarization free energy of solvation -71.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds