Wall clock time and date at job start Tue Mar 31 2020 06:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00090 * 2 1 4 4 H 1.48493 * 109.47363 * 269.99508 * 3 2 1 5 5 H 1.48497 * 109.46991 * 30.00143 * 3 2 1 6 6 H 1.48502 * 109.46824 * 149.99531 * 3 2 1 7 7 C 1.37879 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00262 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47135 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47030 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00078 * 180.02562 * 11 10 9 13 13 O 1.21589 * 119.99855 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00129 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00176 * 180.02562 * 14 12 11 16 16 H 1.09003 * 110.26894 * 32.92076 * 15 14 12 17 17 C 1.51372 * 110.30184 * 270.74769 * 15 14 12 18 18 C 1.38496 * 130.39033 * 44.22379 * 17 15 14 19 19 C 1.38107 * 120.21222 * 180.19377 * 18 17 15 20 20 C 1.38258 * 119.93364 * 359.43709 * 19 18 17 21 21 C 1.38098 * 119.93458 * 0.28615 * 20 19 18 22 22 C 1.38213 * 109.75568 * 223.88831 * 17 15 14 23 23 C 1.51369 * 109.76209 * 359.97438 * 22 17 15 24 24 C 1.54340 * 110.30465 * 154.99762 * 15 14 12 25 25 H 1.08995 * 110.82393 * 27.04281 * 24 15 14 26 26 O 1.42898 * 110.82125 * 263.49593 * 24 15 14 27 27 H 0.96998 * 119.99846 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46817 * 59.99598 * 9 7 2 29 29 H 1.08999 * 109.47052 * 299.99583 * 9 7 2 30 30 H 1.09007 * 109.46837 * 60.00164 * 10 9 7 31 31 H 1.09002 * 109.47505 * 300.00280 * 10 9 7 32 32 H 0.96993 * 120.00108 * 0.02562 * 11 10 9 33 33 H 0.96996 * 120.00373 * 359.97438 * 14 12 11 34 34 H 1.07996 * 119.89823 * 359.90821 * 18 17 15 35 35 H 1.08002 * 120.03557 * 179.72298 * 19 18 17 36 36 H 1.08003 * 120.02920 * 180.25876 * 20 19 18 37 37 H 1.07995 * 119.89222 * 180.02562 * 21 20 19 38 38 H 1.09000 * 110.29982 * 136.11091 * 23 22 17 39 39 H 1.08990 * 110.30539 * 258.26561 * 23 22 17 40 40 H 0.96703 * 113.99750 * 185.57877 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5126 -4.9308 0.0012 12 6 2.1865 -6.0981 0.0018 13 8 3.4024 -6.0981 0.0023 14 7 1.5126 -7.2652 0.0018 15 6 2.2450 -8.5340 0.0031 16 1 3.1767 -8.4316 0.5595 17 6 2.5248 -8.9804 -1.4160 18 6 2.9765 -8.2616 -2.5103 19 6 3.1579 -8.8891 -3.7272 20 6 2.8989 -10.2415 -3.8514 21 6 2.4539 -10.9610 -2.7599 22 6 2.2659 -10.3323 -1.5402 23 6 1.7950 -10.8872 -0.2129 24 6 1.3762 -9.6534 0.6147 25 1 0.3161 -9.4381 0.4807 26 8 1.6872 -9.8399 1.9969 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5568 0.8903 30 1 2.8718 -3.6044 0.8906 31 1 2.8719 -3.6044 -0.8894 32 1 0.5427 -4.9308 0.0011 33 1 0.5426 -7.2653 0.0018 34 1 3.1833 -7.2061 -2.4130 35 1 3.5060 -8.3248 -4.5798 36 1 3.0442 -10.7346 -4.8012 37 1 2.2523 -12.0175 -2.8576 38 1 0.9423 -11.5499 -0.3612 39 1 2.6063 -11.4190 0.2839 40 1 1.2301 -10.5878 2.4055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273190980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:19 Heat of formation + Delta-G solvation = -60.576633 kcal Electronic energy + Delta-G solvation = -22353.398223 eV Core-core repulsion = 18939.501030 eV Total energy + Delta-G solvation = -3413.897193 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79207 -39.15276 -37.51424 -35.16036 -34.52764 -33.32636 -32.74137 -31.05187 -29.45818 -28.32351 -26.74936 -24.50390 -22.71329 -21.44445 -21.29586 -20.76665 -20.47170 -18.24022 -17.54413 -16.79414 -16.33268 -16.12526 -15.47371 -15.07136 -14.84209 -14.54136 -14.42668 -13.93339 -13.75521 -13.55148 -13.51161 -13.25312 -12.89785 -12.72088 -12.36690 -12.24036 -11.58681 -11.16841 -11.12483 -11.01477 -10.99599 -10.61087 -10.54299 -10.29595 -9.91803 -9.53884 -9.24474 -9.07138 -8.92183 -8.74254 -8.46980 -8.23695 -6.07290 -4.09739 1.15592 1.26511 3.00716 3.31259 3.37292 3.42120 3.56193 3.64634 3.69060 4.06566 4.38646 4.44761 4.63324 4.68075 4.83994 4.89339 5.00411 5.04790 5.23517 5.29878 5.37446 5.44126 5.56931 5.69937 5.82617 5.97192 6.27909 6.32051 6.40907 6.42674 6.42920 6.63362 6.80343 6.85656 7.02906 7.24235 7.28116 7.59222 7.65883 7.92129 8.28092 8.45384 8.95068 9.02212 9.54898 11.04428 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.003041 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.100205 B = 9205.029015 C = 9949.820450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.700 3.300 13 O -0.594 6.594 14 N -0.743 5.743 15 C 0.211 3.789 16 H 0.114 0.886 17 C -0.102 4.102 18 C -0.079 4.079 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.096 4.096 23 C -0.111 4.111 24 C 0.100 3.900 25 H 0.077 0.923 26 O -0.552 6.552 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.393 0.607 33 H 0.394 0.606 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.631 -25.348 -3.208 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.391 5.391 12 C 0.400 3.600 13 O -0.473 6.473 14 N -0.399 5.399 15 C 0.104 3.896 16 H 0.132 0.868 17 C -0.104 4.104 18 C -0.097 4.097 19 C -0.139 4.139 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.097 4.097 23 C -0.149 4.149 24 C 0.040 3.960 25 H 0.095 0.905 26 O -0.357 6.357 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.742 -24.636 -3.288 24.866 hybrid contribution -0.886 0.463 -0.048 1.001 sum -0.144 -24.173 -3.336 24.403 Atomic orbital electron populations 1.69959 1.06088 1.26824 1.50516 1.24997 0.94895 0.99401 0.95031 0.86508 0.79861 0.82994 0.78180 1.20576 1.21197 1.19700 1.21059 0.93279 0.90367 1.51174 0.92216 1.19323 0.94258 0.91082 0.97789 1.21592 0.95625 0.80375 1.00644 1.45531 1.09843 1.05274 1.78461 1.16050 0.85702 0.80427 0.77822 1.90897 1.11625 1.86528 1.58228 1.45103 1.09173 1.04140 1.81440 1.19992 0.96643 0.81515 0.91402 0.86825 1.20736 1.00005 0.94232 0.95400 1.20759 0.96888 1.00564 0.91517 1.21123 1.00497 0.94876 0.97434 1.21050 0.99643 0.94386 0.98398 1.20537 1.01039 0.99622 0.91767 1.20306 1.00412 0.94470 0.94525 1.21750 1.01990 0.98116 0.93014 1.22634 0.98027 0.93699 0.81623 0.90497 1.86598 1.72006 1.54664 1.22464 0.92887 0.96003 0.95964 0.92763 0.92802 0.77413 0.77178 0.85690 0.85737 0.85893 0.86306 0.90056 0.88839 0.77067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 11 N -0.74 -13.35 5.56 -65.22 -0.36 -13.72 16 12 C 0.70 12.59 8.29 -86.92 -0.72 11.87 16 13 O -0.59 -12.97 15.77 5.29 0.08 -12.89 16 14 N -0.74 -10.08 5.10 -58.79 -0.30 -10.38 16 15 C 0.21 2.71 2.96 -68.05 -0.20 2.50 16 16 H 0.11 1.80 7.52 -51.93 -0.39 1.41 16 17 C -0.10 -1.30 5.79 -104.21 -0.60 -1.90 16 18 C -0.08 -1.07 10.00 -39.53 -0.40 -1.47 16 19 C -0.12 -1.37 10.05 -39.62 -0.40 -1.76 16 20 C -0.12 -1.12 10.05 -39.63 -0.40 -1.52 16 21 C -0.11 -1.04 10.04 -39.54 -0.40 -1.44 16 22 C -0.10 -0.99 6.14 -104.20 -0.64 -1.63 16 23 C -0.11 -0.85 6.51 -26.84 -0.17 -1.02 16 24 C 0.10 0.90 4.14 -25.31 -0.10 0.79 16 25 H 0.08 0.57 7.82 -51.93 -0.41 0.16 16 26 O -0.55 -5.06 13.39 -35.23 -0.47 -5.54 16 27 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.39 6.13 8.49 -40.82 -0.35 5.78 16 33 H 0.39 4.22 8.43 -40.82 -0.34 3.87 16 34 H 0.13 1.96 7.56 -52.49 -0.40 1.57 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.38 1.55 9.11 45.56 0.42 1.96 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -34.45 341.16 -9.62 -44.06 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.81 Total: 8.04 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -4.61 Total: -5.69 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.07 Total: -49.68 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.39 Total: -18.42 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.45 -9.62 -44.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273190980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.514 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds