Wall clock time and date at job start Tue Mar 31 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00090 * 2 1 4 4 H 1.48493 * 109.47363 * 269.99508 * 3 2 1 5 5 H 1.48497 * 109.46991 * 30.00143 * 3 2 1 6 6 H 1.48502 * 109.46824 * 149.99531 * 3 2 1 7 7 C 1.37879 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00262 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47135 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47030 * 179.97438 * 10 9 7 12 12 C 1.34780 * 120.00078 * 180.02562 * 11 10 9 13 13 O 1.21589 * 119.99855 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00129 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00176 * 180.02562 * 14 12 11 16 16 H 1.09003 * 110.26894 * 32.92076 * 15 14 12 17 17 C 1.51372 * 110.30184 * 270.74769 * 15 14 12 18 18 C 1.38496 * 130.39033 * 44.22379 * 17 15 14 19 19 C 1.38107 * 120.21222 * 180.19377 * 18 17 15 20 20 C 1.38258 * 119.93364 * 359.43709 * 19 18 17 21 21 C 1.38098 * 119.93458 * 0.28615 * 20 19 18 22 22 C 1.38213 * 109.75568 * 223.88831 * 17 15 14 23 23 C 1.51369 * 109.76209 * 359.97438 * 22 17 15 24 24 C 1.54340 * 110.30465 * 154.99762 * 15 14 12 25 25 H 1.08995 * 110.82393 * 27.04281 * 24 15 14 26 26 O 1.42898 * 110.82125 * 263.49593 * 24 15 14 27 27 H 0.96998 * 119.99846 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46817 * 59.99598 * 9 7 2 29 29 H 1.08999 * 109.47052 * 299.99583 * 9 7 2 30 30 H 1.09007 * 109.46837 * 60.00164 * 10 9 7 31 31 H 1.09002 * 109.47505 * 300.00280 * 10 9 7 32 32 H 0.96993 * 120.00108 * 0.02562 * 11 10 9 33 33 H 0.96996 * 120.00373 * 359.97438 * 14 12 11 34 34 H 1.07996 * 119.89823 * 359.90821 * 18 17 15 35 35 H 1.08002 * 120.03557 * 179.72298 * 19 18 17 36 36 H 1.08003 * 120.02920 * 180.25876 * 20 19 18 37 37 H 1.07995 * 119.89222 * 180.02562 * 21 20 19 38 38 H 1.09000 * 110.29982 * 136.11091 * 23 22 17 39 39 H 1.08990 * 110.30539 * 258.26561 * 23 22 17 40 40 H 0.96703 * 113.99750 * 185.57877 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5126 -4.9308 0.0012 12 6 2.1865 -6.0981 0.0018 13 8 3.4024 -6.0981 0.0023 14 7 1.5126 -7.2652 0.0018 15 6 2.2450 -8.5340 0.0031 16 1 3.1767 -8.4316 0.5595 17 6 2.5248 -8.9804 -1.4160 18 6 2.9765 -8.2616 -2.5103 19 6 3.1579 -8.8891 -3.7272 20 6 2.8989 -10.2415 -3.8514 21 6 2.4539 -10.9610 -2.7599 22 6 2.2659 -10.3323 -1.5402 23 6 1.7950 -10.8872 -0.2129 24 6 1.3762 -9.6534 0.6147 25 1 0.3161 -9.4381 0.4807 26 8 1.6872 -9.8399 1.9969 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5568 0.8903 30 1 2.8718 -3.6044 0.8906 31 1 2.8719 -3.6044 -0.8894 32 1 0.5427 -4.9308 0.0011 33 1 0.5426 -7.2653 0.0018 34 1 3.1833 -7.2061 -2.4130 35 1 3.5060 -8.3248 -4.5798 36 1 3.0442 -10.7346 -4.8012 37 1 2.2523 -12.0175 -2.8576 38 1 0.9423 -11.5499 -0.3612 39 1 2.6063 -11.4190 0.2839 40 1 1.2301 -10.5878 2.4055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273190980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:18 Heat of formation + Delta-G solvation = -86.946770 kcal Electronic energy + Delta-G solvation = -22354.541718 eV Core-core repulsion = 18939.501030 eV Total energy + Delta-G solvation = -3415.040688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76685 -40.47372 -38.27827 -36.70391 -35.78777 -34.85739 -34.20731 -32.10016 -31.19624 -29.09750 -27.85160 -26.37771 -23.51521 -23.08955 -22.29838 -22.00951 -21.66575 -19.56927 -18.55023 -18.27247 -17.80089 -17.08458 -16.57874 -16.50436 -16.32797 -16.02832 -15.39913 -15.15025 -15.04487 -14.89732 -14.46483 -14.27890 -14.16945 -13.86602 -13.63186 -13.23123 -13.11696 -12.94932 -12.53472 -12.41881 -12.24098 -11.90104 -11.80640 -11.70390 -11.53609 -11.29989 -11.08998 -10.61351 -10.40142 -9.82889 -9.76726 -9.55486 -8.24776 -6.35154 0.32384 0.42055 1.41196 1.42045 1.53426 1.71831 2.11928 2.40772 2.78667 2.98035 3.09923 3.27382 3.39931 3.70922 3.92236 4.07858 4.10653 4.21663 4.34279 4.43072 4.49570 4.54553 4.60728 4.67164 4.81999 4.84166 4.95098 5.06482 5.14125 5.28958 5.39205 5.49577 5.50926 5.57712 5.57932 5.65288 5.77377 5.98249 6.05732 6.16141 6.77636 6.89501 7.08294 7.34069 7.56077 8.87255 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.003041 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.100205 B = 9205.029015 C = 9949.820450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.161 3.839 11 N -0.732 5.732 12 C 0.699 3.301 13 O -0.636 6.636 14 N -0.723 5.723 15 C 0.202 3.798 16 H 0.075 0.925 17 C -0.127 4.127 18 C -0.109 4.109 19 C -0.133 4.133 20 C -0.112 4.112 21 C -0.108 4.108 22 C -0.094 4.094 23 C -0.100 4.100 24 C 0.110 3.890 25 H 0.100 0.900 26 O -0.573 6.573 27 H 0.266 0.734 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.407 0.593 33 H 0.411 0.589 34 H 0.087 0.913 35 H 0.133 0.867 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -27.731 -3.574 28.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.012 4.012 10 C 0.037 3.963 11 N -0.387 5.387 12 C 0.399 3.601 13 O -0.518 6.518 14 N -0.379 5.379 15 C 0.096 3.904 16 H 0.093 0.907 17 C -0.129 4.129 18 C -0.128 4.128 19 C -0.151 4.151 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.095 4.095 23 C -0.138 4.138 24 C 0.051 3.949 25 H 0.118 0.882 26 O -0.383 6.383 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.242 0.758 33 H 0.248 0.752 34 H 0.106 0.894 35 H 0.150 0.850 36 H 0.171 0.829 37 H 0.172 0.828 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -0.181 -27.081 -3.645 27.326 hybrid contribution -0.616 1.119 0.049 1.278 sum -0.796 -25.962 -3.597 26.222 Atomic orbital electron populations 1.70059 1.07517 1.28023 1.50966 1.25872 0.95822 1.03082 0.94356 0.85433 0.78610 0.78386 0.78557 1.19700 1.20379 1.19134 1.21460 0.93578 0.91921 1.51633 0.92388 1.19115 0.94169 0.91569 0.96356 1.21072 0.94653 0.81117 0.99462 1.45207 1.10352 1.04357 1.78773 1.16157 0.85217 0.81243 0.77453 1.90864 1.13692 1.87208 1.60019 1.44928 1.09960 1.03228 1.79779 1.20191 0.96070 0.82115 0.92037 0.90733 1.20764 1.01511 0.95821 0.94786 1.20674 0.99408 0.99216 0.93496 1.21296 1.00863 0.96197 0.96762 1.21433 0.98191 0.93402 0.99994 1.20976 0.99440 1.01240 0.90909 1.20669 0.99384 0.93218 0.96185 1.21766 1.03498 0.97626 0.90871 1.22571 0.98087 0.92520 0.81751 0.88196 1.86550 1.72898 1.56273 1.22579 0.92502 0.97283 0.97263 0.94006 0.93956 0.75797 0.75232 0.89437 0.84957 0.82862 0.82788 0.86435 0.88145 0.74344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.93 13.29 21.45 0.28 -54.64 16 2 C 0.01 0.42 5.46 84.65 0.46 0.89 16 3 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.55 -31.35 9.11 25.60 0.23 -31.12 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.32 5.09 29.85 0.15 1.47 16 10 C 0.16 7.37 5.61 86.38 0.48 7.86 16 11 N -0.73 -27.51 5.56 -478.53 -2.66 -30.17 16 12 C 0.70 26.38 8.29 179.05 1.48 27.86 16 13 O -0.64 -29.60 15.77 -4.00 -0.06 -29.66 16 14 N -0.72 -20.06 5.10 -458.18 -2.34 -22.40 16 15 C 0.20 5.26 2.96 44.91 0.13 5.39 16 16 H 0.07 2.53 7.52 -2.39 -0.02 2.51 16 17 C -0.13 -3.26 5.79 -19.60 -0.11 -3.37 16 18 C -0.11 -3.16 10.00 22.30 0.22 -2.93 16 19 C -0.13 -3.01 10.05 22.24 0.22 -2.78 16 20 C -0.11 -1.88 10.05 22.24 0.22 -1.66 16 21 C -0.11 -1.64 10.04 22.30 0.22 -1.42 16 22 C -0.09 -1.71 6.14 -19.59 -0.12 -1.84 16 23 C -0.10 -1.17 6.51 30.52 0.20 -0.97 16 24 C 0.11 1.74 4.14 31.51 0.13 1.87 16 25 H 0.10 1.13 7.82 -2.39 -0.02 1.11 16 26 O -0.57 -9.41 13.39 -148.98 -2.00 -11.41 16 27 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.04 2.00 8.14 -2.38 -0.02 1.99 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.41 12.93 8.49 -92.71 -0.79 12.14 16 33 H 0.41 8.54 8.43 -92.71 -0.78 7.76 16 34 H 0.09 3.09 7.56 -2.91 -0.02 3.07 16 35 H 0.13 2.60 8.06 -2.91 -0.02 2.57 16 36 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.10 1.10 8.10 -2.39 -0.02 1.08 16 40 H 0.40 2.09 9.11 -74.06 -0.67 1.42 16 Total: -1.00 -77.67 341.16 -1.97 -79.64 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -1.16 Total: 23.03 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 3.94 Total: -0.75 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -4.71 Total: -107.22 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -2.06 Total: -41.07 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -77.67 -1.97 -79.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273190980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.310 kcal (2) G-P(sol) polarization free energy of solvation -77.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds