Wall clock time and date at job start Tue Mar 31 2020 06:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00376 * 2 1 4 4 H 1.48502 * 109.47173 * 269.99599 * 3 2 1 5 5 H 1.48501 * 109.46904 * 29.99402 * 3 2 1 6 6 H 1.48498 * 109.47579 * 149.99679 * 3 2 1 7 7 C 1.37883 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99594 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00259 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47309 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47453 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00321 * 179.97438 * 11 10 9 13 13 O 1.21590 * 119.99977 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00206 * 179.97438 * 12 11 10 15 15 C 1.46495 * 120.00114 * 179.97438 * 14 12 11 16 16 H 1.08996 * 110.27087 * 324.38476 * 15 14 12 17 17 C 1.51370 * 110.30254 * 86.45954 * 15 14 12 18 18 C 1.38497 * 130.38714 * 316.08513 * 17 15 14 19 19 C 1.38105 * 120.21744 * 180.02562 * 18 17 15 20 20 C 1.38254 * 119.92991 * 359.97438 * 19 18 17 21 21 C 1.38106 * 119.93740 * 0.02562 * 20 19 18 22 22 C 1.38214 * 109.76507 * 136.11306 * 17 15 14 23 23 C 1.51377 * 109.75557 * 359.97438 * 22 17 15 24 24 C 1.54349 * 105.16920 * 342.81156 * 23 22 17 25 25 H 1.08996 * 110.82045 * 144.56963 * 24 23 22 26 26 O 1.42898 * 110.82644 * 268.12227 * 24 23 22 27 27 H 0.97004 * 119.99789 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47010 * 59.99908 * 9 7 2 29 29 H 1.09000 * 109.47050 * 300.00187 * 9 7 2 30 30 H 1.08999 * 109.47410 * 59.99846 * 10 9 7 31 31 H 1.09000 * 109.46967 * 299.99931 * 10 9 7 32 32 H 0.97005 * 119.99702 * 359.97438 * 11 10 9 33 33 H 0.96996 * 119.99945 * 0.02562 * 14 12 11 34 34 H 1.07999 * 119.89474 * 0.02742 * 18 17 15 35 35 H 1.07998 * 120.03781 * 179.70795 * 19 18 17 36 36 H 1.08009 * 120.03109 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.89397 * 179.97438 * 21 20 19 38 38 H 1.08999 * 110.30108 * 223.89254 * 23 22 17 39 39 H 1.09002 * 110.38530 * 101.77667 * 23 22 17 40 40 H 0.96701 * 113.99810 * 292.97889 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6367 0.0010 11 7 5.4864 -2.6368 0.0022 12 6 6.1603 -3.8039 0.0028 13 8 5.5523 -4.8569 0.0029 14 7 7.5081 -3.8040 0.0034 15 6 8.2405 -5.0727 0.0046 16 1 7.7092 -5.8149 0.6004 17 6 8.4278 -5.5725 -1.4119 18 6 7.5360 -5.6249 -2.4702 19 6 7.9358 -6.1306 -3.6916 20 6 9.2305 -6.5856 -3.8594 21 6 10.1212 -6.5341 -2.8052 22 6 9.7219 -6.0280 -1.5795 23 6 10.4932 -5.8649 -0.2872 24 6 9.6690 -4.8652 0.5516 25 1 9.7180 -5.1158 1.6113 26 8 10.1110 -3.5255 0.3240 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8888 30 1 3.6585 -3.1503 -0.8892 31 1 3.6578 -3.1506 0.8907 32 1 5.9715 -1.7967 0.0025 33 1 7.9931 -2.9640 0.0037 34 1 6.5246 -5.2692 -2.3400 35 1 7.2367 -6.1745 -4.5136 36 1 9.5448 -6.9817 -4.8138 37 1 11.1323 -6.8902 -2.9369 38 1 11.4860 -5.4622 -0.4876 39 1 10.5708 -6.8203 0.2317 40 1 11.0034 -3.3450 0.6499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273190983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:21 Heat of formation + Delta-G solvation = -82.289421 kcal Electronic energy + Delta-G solvation = -22554.088072 eV Core-core repulsion = 19139.249342 eV Total energy + Delta-G solvation = -3414.838730 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.74575 -40.44202 -38.22620 -36.70883 -35.50973 -34.82437 -34.20696 -32.24485 -31.45246 -29.21848 -27.89507 -26.32542 -23.48807 -22.80290 -22.33247 -21.94344 -21.46434 -19.49641 -18.94056 -18.35596 -17.78085 -16.86378 -16.45641 -16.37430 -16.25647 -16.17665 -15.58402 -15.34156 -15.13306 -14.77314 -14.60917 -14.25824 -14.04691 -13.79726 -13.77334 -13.35733 -13.05170 -12.58973 -12.39325 -12.24250 -12.15747 -12.11053 -11.82582 -11.76625 -11.54774 -11.29020 -11.02627 -10.79410 -10.35223 -9.80385 -9.72655 -9.52541 -8.30612 -6.37853 0.36975 0.44472 1.38633 1.41182 1.52715 1.74301 2.14392 2.36522 2.81421 3.03538 3.04294 3.38412 3.48144 3.61721 4.01482 4.05097 4.13625 4.20902 4.32853 4.43390 4.47359 4.57959 4.61898 4.72042 4.74416 4.82752 4.99662 5.09833 5.14134 5.17962 5.40112 5.42624 5.43611 5.52693 5.59139 5.65830 5.70118 6.04316 6.08879 6.22780 6.69155 6.93157 7.15498 7.26525 7.60433 8.86299 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.003264 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.050432 B = 8575.603778 C = 9083.323695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.238 1.238 7 C -0.539 4.539 8 H 0.029 0.971 9 C -0.011 4.011 10 C 0.166 3.834 11 N -0.733 5.733 12 C 0.696 3.304 13 O -0.637 6.637 14 N -0.716 5.716 15 C 0.199 3.801 16 H 0.092 0.908 17 C -0.128 4.128 18 C -0.113 4.113 19 C -0.139 4.139 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.094 4.094 23 C -0.103 4.103 24 C 0.112 3.888 25 H 0.107 0.893 26 O -0.571 6.571 27 H 0.268 0.732 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.408 0.592 33 H 0.415 0.585 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.538 -9.726 -1.635 33.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.161 1.161 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.049 4.049 10 C 0.042 3.958 11 N -0.388 5.388 12 C 0.396 3.604 13 O -0.518 6.518 14 N -0.372 5.372 15 C 0.093 3.907 16 H 0.110 0.890 17 C -0.130 4.130 18 C -0.132 4.132 19 C -0.157 4.157 20 C -0.135 4.135 21 C -0.131 4.131 22 C -0.094 4.094 23 C -0.140 4.140 24 C 0.053 3.947 25 H 0.124 0.876 26 O -0.381 6.381 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.244 0.756 33 H 0.253 0.747 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 30.254 -10.502 -1.871 32.080 hybrid contribution -0.237 1.166 -0.035 1.190 sum 30.018 -9.336 -1.905 31.494 Atomic orbital electron populations 1.70076 1.08557 1.28455 1.51954 1.26077 0.95704 1.03849 0.93630 0.85526 0.79646 0.77317 0.79306 1.19070 1.21053 1.16066 1.21242 0.91491 0.93429 1.51608 0.95293 1.19634 0.94437 0.92793 0.97987 1.20860 0.77083 0.98264 0.99632 1.45142 1.07298 1.07305 1.79098 1.16226 0.82586 0.84007 0.77593 1.90874 1.68961 1.31916 1.60092 1.44759 1.02950 1.10357 1.79165 1.20611 0.92018 0.85515 0.92538 0.89004 1.21014 0.95270 1.00828 0.95852 1.20697 0.98598 1.00019 0.93854 1.21269 0.97773 0.99905 0.96732 1.21393 0.92776 0.99172 1.00136 1.20958 1.00916 0.99796 0.91404 1.20794 0.94127 0.98115 0.96395 1.21858 0.99529 1.01212 0.91382 1.22642 0.89692 0.83208 0.99196 0.87555 1.86331 1.38978 1.27725 1.85019 0.92279 0.94419 0.94843 0.94348 0.93974 0.75610 0.74745 0.89583 0.85380 0.83228 0.83110 0.87084 0.87039 0.74185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 2 C 0.00 0.26 5.47 84.66 0.46 0.73 16 3 Si 0.96 43.24 27.47 68.60 1.88 45.12 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 7 C -0.54 -31.65 9.66 25.60 0.25 -31.40 16 8 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 9 C -0.01 -0.50 4.16 29.85 0.12 -0.37 16 10 C 0.17 7.26 5.61 86.38 0.48 7.74 16 11 N -0.73 -25.66 5.56 -478.55 -2.66 -28.32 16 12 C 0.70 24.97 8.02 179.06 1.44 26.41 16 13 O -0.64 -28.34 15.48 -4.00 -0.06 -28.40 16 14 N -0.72 -19.17 5.07 -458.16 -2.32 -21.49 16 15 C 0.20 4.68 3.11 44.92 0.14 4.82 16 16 H 0.09 2.48 7.64 -2.39 -0.02 2.46 16 17 C -0.13 -3.28 5.78 -19.60 -0.11 -3.39 16 18 C -0.11 -3.39 9.87 22.30 0.22 -3.17 16 19 C -0.14 -3.38 10.05 22.24 0.22 -3.15 16 20 C -0.12 -2.16 10.05 22.24 0.22 -1.93 16 21 C -0.11 -1.85 10.04 22.30 0.22 -1.63 16 22 C -0.09 -1.73 6.14 -19.60 -0.12 -1.85 16 23 C -0.10 -1.02 6.51 30.52 0.20 -0.82 16 24 C 0.11 1.41 4.36 31.52 0.14 1.55 16 25 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 26 O -0.57 -6.56 11.86 -148.98 -1.77 -8.33 16 27 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.04 1.64 7.20 -2.39 -0.02 1.62 16 29 H 0.03 1.45 7.57 -2.39 -0.02 1.44 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.41 11.52 8.49 -92.70 -0.79 10.74 16 33 H 0.41 9.39 7.29 -92.71 -0.68 8.71 16 34 H 0.09 3.15 7.08 -2.91 -0.02 3.13 16 35 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.11 0.57 8.11 -2.39 -0.02 0.55 16 39 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.41 0.60 9.12 -74.06 -0.68 -0.07 16 Total: -1.00 -80.87 334.50 -1.85 -82.72 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -1.11 Total: 25.09 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 3.89 Total: -6.48 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -4.69 Total: -109.72 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -1.83 Total: -36.73 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Total: -80.87 -1.85 -82.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273190983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.428 kcal (2) G-P(sol) polarization free energy of solvation -80.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds