Wall clock time and date at job start Tue Mar 31 2020 06:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99893 * 2 1 4 4 H 1.48502 * 109.47022 * 269.99211 * 3 2 1 5 5 H 1.48490 * 109.47637 * 29.99483 * 3 2 1 6 6 H 1.48506 * 109.46997 * 149.99901 * 3 2 1 7 7 C 1.37875 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47056 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00091 * 180.02562 * 11 10 9 13 13 O 1.21592 * 119.99853 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00148 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99963 * 179.97438 * 14 12 11 16 16 H 1.08998 * 110.34642 * 35.67854 * 15 14 12 17 17 C 1.51360 * 110.30657 * 273.54777 * 15 14 12 18 18 C 1.38500 * 130.39520 * 43.85323 * 17 15 14 19 19 C 1.38105 * 120.21740 * 180.02562 * 18 17 15 20 20 C 1.38255 * 119.93554 * 0.30825 * 19 18 17 21 21 C 1.38106 * 119.93179 * 359.41935 * 20 19 18 22 22 C 1.38224 * 109.75920 * 223.88960 * 17 15 14 23 23 C 1.51365 * 109.75805 * 359.97438 * 22 17 15 24 24 C 1.54346 * 105.17004 * 17.19218 * 23 22 17 25 25 H 1.08996 * 110.82341 * 215.22743 * 24 23 22 26 26 O 1.42904 * 110.82579 * 91.87621 * 24 23 22 27 27 H 0.97002 * 120.00080 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47520 * 60.00031 * 9 7 2 29 29 H 1.09006 * 109.47029 * 299.99386 * 9 7 2 30 30 H 1.09009 * 109.47308 * 59.99949 * 10 9 7 31 31 H 1.09000 * 109.47268 * 299.99817 * 10 9 7 32 32 H 0.96997 * 120.00111 * 0.02562 * 11 10 9 33 33 H 0.96997 * 120.00054 * 359.97438 * 14 12 11 34 34 H 1.08002 * 119.89266 * 0.04895 * 18 17 15 35 35 H 1.08002 * 120.02929 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.03279 * 179.72107 * 20 19 18 37 37 H 1.08003 * 119.89372 * 180.27785 * 21 20 19 38 38 H 1.08994 * 110.30442 * 136.11448 * 23 22 17 39 39 H 1.08999 * 110.30323 * 258.26741 * 23 22 17 40 40 H 0.96695 * 113.99699 * 61.44915 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 7 1.5126 -4.9308 0.0024 12 6 2.1864 -6.0980 0.0041 13 8 3.4024 -6.0981 0.0046 14 7 1.5125 -7.2652 0.0052 15 6 2.2450 -8.5340 0.0065 16 1 3.1534 -8.4465 0.6025 17 6 2.5838 -8.9463 -1.4099 18 6 3.0739 -8.2004 -2.4690 19 6 3.3107 -8.7998 -3.6905 20 6 3.0521 -10.1474 -3.8595 21 6 2.5688 -10.8941 -2.8030 22 6 2.3310 -10.2949 -1.5771 23 6 1.8057 -10.8812 -0.2843 24 6 1.3528 -9.6676 0.5549 25 1 1.5432 -9.8366 1.6147 26 8 -0.0287 -9.3806 0.3287 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5572 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 2.8712 -3.6040 0.8923 31 1 2.8725 -3.6049 -0.8877 32 1 0.5427 -4.9308 0.0016 33 1 0.5426 -7.2652 0.0052 34 1 3.2718 -7.1466 -2.3392 35 1 3.6933 -8.2153 -4.5142 36 1 3.2325 -10.6167 -4.8153 37 1 2.3712 -11.9477 -2.9344 38 1 0.9604 -11.5397 -0.4836 39 1 2.5960 -11.4250 0.2331 40 1 -0.6256 -10.0994 0.5776 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273190984.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:24 Heat of formation + Delta-G solvation = -59.034785 kcal Electronic energy + Delta-G solvation = -22495.250223 eV Core-core repulsion = 19081.419890 eV Total energy + Delta-G solvation = -3413.830333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.77518 -39.08870 -37.47450 -35.01823 -34.36631 -33.30248 -32.71839 -30.97351 -29.42015 -28.43047 -26.71633 -24.48139 -22.68201 -21.44104 -21.24377 -20.69453 -20.27879 -18.18062 -17.51450 -16.74647 -16.27236 -15.87558 -15.54456 -15.20663 -14.91669 -14.60123 -14.48547 -13.91246 -13.61866 -13.50849 -13.26341 -13.12568 -13.06305 -12.68264 -12.25234 -11.85201 -11.55119 -11.40511 -11.14565 -11.00273 -10.95444 -10.60004 -10.47009 -10.27180 -9.89145 -9.51732 -9.22591 -8.97601 -8.83438 -8.68004 -8.44630 -8.18942 -6.05747 -4.08250 1.24241 1.34312 3.05966 3.32040 3.38038 3.42686 3.60989 3.64248 3.85249 4.14315 4.30214 4.43337 4.64366 4.77325 4.83708 4.95275 5.06138 5.17010 5.28897 5.31272 5.36705 5.45738 5.59081 5.68719 5.88147 6.04421 6.34703 6.35860 6.44700 6.48283 6.50715 6.70656 6.82657 6.93401 7.07311 7.28085 7.38380 7.62868 7.68219 7.93819 8.30551 8.53204 8.97023 9.07316 9.56260 11.05948 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025694 B = 0.003069 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.494320 B = 9120.209453 C = 9732.011158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.141 3.859 11 N -0.738 5.738 12 C 0.697 3.303 13 O -0.600 6.600 14 N -0.736 5.736 15 C 0.213 3.787 16 H 0.110 0.890 17 C -0.101 4.101 18 C -0.080 4.080 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.095 4.095 23 C -0.111 4.111 24 C 0.099 3.901 25 H 0.082 0.918 26 O -0.555 6.555 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.394 0.606 33 H 0.405 0.595 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -25.598 -2.004 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.391 5.391 12 C 0.397 3.603 13 O -0.479 6.479 14 N -0.392 5.392 15 C 0.107 3.893 16 H 0.128 0.872 17 C -0.103 4.103 18 C -0.098 4.098 19 C -0.141 4.141 20 C -0.137 4.137 21 C -0.131 4.131 22 C -0.096 4.096 23 C -0.149 4.149 24 C 0.039 3.961 25 H 0.100 0.900 26 O -0.361 6.361 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.227 0.773 33 H 0.241 0.759 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.615 -24.853 -2.187 25.002 hybrid contribution -0.679 0.392 0.033 0.785 sum 0.935 -24.461 -2.154 24.574 Atomic orbital electron populations 1.69963 1.06082 1.26806 1.50509 1.24998 0.94891 0.99387 0.95060 0.86512 0.79842 0.83025 0.78175 1.20583 1.21207 1.19720 1.21059 0.93259 0.90383 1.51160 0.92234 1.19326 0.94269 0.91076 0.97814 1.21576 0.95601 0.80456 1.00556 1.45524 1.09902 1.05256 1.78442 1.16123 0.85679 0.80595 0.77894 1.90883 1.11661 1.86670 1.58704 1.44908 1.10147 1.03352 1.80829 1.20261 0.94723 0.81900 0.92442 0.87197 1.20867 0.99317 0.94121 0.95987 1.20783 0.96790 1.00486 0.91788 1.21110 1.00634 0.95056 0.97302 1.21026 0.99804 0.94302 0.98530 1.20509 1.01076 0.99525 0.92034 1.20333 0.99993 0.94593 0.94688 1.21787 1.01619 0.97940 0.93518 1.22740 0.82192 0.93183 0.97940 0.90045 1.86396 1.15621 1.45331 1.88785 0.92892 0.95978 0.95971 0.92829 0.92865 0.77346 0.75891 0.85715 0.85880 0.86034 0.86492 0.89832 0.89071 0.76830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.12 5.61 -4.04 -0.02 3.09 16 11 N -0.74 -13.71 5.56 -65.22 -0.36 -14.07 16 12 C 0.70 12.71 8.02 -86.92 -0.70 12.01 16 13 O -0.60 -12.92 15.49 5.28 0.08 -12.84 16 14 N -0.74 -10.49 5.07 -58.80 -0.30 -10.79 16 15 C 0.21 2.67 3.10 -68.06 -0.21 2.46 16 16 H 0.11 1.49 7.65 -51.93 -0.40 1.09 16 17 C -0.10 -1.34 5.79 -104.21 -0.60 -1.94 16 18 C -0.08 -1.16 9.87 -39.53 -0.39 -1.55 16 19 C -0.12 -1.49 10.05 -39.62 -0.40 -1.89 16 20 C -0.12 -1.23 10.05 -39.62 -0.40 -1.63 16 21 C -0.11 -1.14 10.04 -39.53 -0.40 -1.53 16 22 C -0.10 -1.03 6.14 -104.20 -0.64 -1.67 16 23 C -0.11 -0.81 6.51 -26.85 -0.17 -0.99 16 24 C 0.10 0.83 4.36 -25.33 -0.11 0.72 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 26 O -0.56 -4.53 11.87 -35.23 -0.42 -4.95 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.39 6.47 8.49 -40.82 -0.35 6.12 16 33 H 0.41 5.25 7.29 -40.82 -0.30 4.95 16 34 H 0.12 2.08 7.08 -52.49 -0.37 1.71 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 38 H 0.08 0.47 8.10 -51.93 -0.42 0.04 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.38 1.37 9.11 45.56 0.41 1.78 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -34.12 338.10 -9.55 -43.66 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -4.76 Total: 9.15 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -4.59 Total: -6.14 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.08 Total: -50.60 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.34 Total: -17.79 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.12 -9.55 -43.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273190984.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.372 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds