Wall clock time and date at job start Tue Mar 31 2020 06:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99893 * 2 1 4 4 H 1.48502 * 109.47022 * 269.99211 * 3 2 1 5 5 H 1.48490 * 109.47637 * 29.99483 * 3 2 1 6 6 H 1.48506 * 109.46997 * 149.99901 * 3 2 1 7 7 C 1.37875 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47056 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00091 * 180.02562 * 11 10 9 13 13 O 1.21592 * 119.99853 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00148 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99963 * 179.97438 * 14 12 11 16 16 H 1.08998 * 110.34642 * 35.67854 * 15 14 12 17 17 C 1.51360 * 110.30657 * 273.54777 * 15 14 12 18 18 C 1.38500 * 130.39520 * 43.85323 * 17 15 14 19 19 C 1.38105 * 120.21740 * 180.02562 * 18 17 15 20 20 C 1.38255 * 119.93554 * 0.30825 * 19 18 17 21 21 C 1.38106 * 119.93179 * 359.41935 * 20 19 18 22 22 C 1.38224 * 109.75920 * 223.88960 * 17 15 14 23 23 C 1.51365 * 109.75805 * 359.97438 * 22 17 15 24 24 C 1.54346 * 105.17004 * 17.19218 * 23 22 17 25 25 H 1.08996 * 110.82341 * 215.22743 * 24 23 22 26 26 O 1.42904 * 110.82579 * 91.87621 * 24 23 22 27 27 H 0.97002 * 120.00080 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47520 * 60.00031 * 9 7 2 29 29 H 1.09006 * 109.47029 * 299.99386 * 9 7 2 30 30 H 1.09009 * 109.47308 * 59.99949 * 10 9 7 31 31 H 1.09000 * 109.47268 * 299.99817 * 10 9 7 32 32 H 0.96997 * 120.00111 * 0.02562 * 11 10 9 33 33 H 0.96997 * 120.00054 * 359.97438 * 14 12 11 34 34 H 1.08002 * 119.89266 * 0.04895 * 18 17 15 35 35 H 1.08002 * 120.02929 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.03279 * 179.72107 * 20 19 18 37 37 H 1.08003 * 119.89372 * 180.27785 * 21 20 19 38 38 H 1.08994 * 110.30442 * 136.11448 * 23 22 17 39 39 H 1.08999 * 110.30323 * 258.26741 * 23 22 17 40 40 H 0.96695 * 113.99699 * 61.44915 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 7 1.5126 -4.9308 0.0024 12 6 2.1864 -6.0980 0.0041 13 8 3.4024 -6.0981 0.0046 14 7 1.5125 -7.2652 0.0052 15 6 2.2450 -8.5340 0.0065 16 1 3.1534 -8.4465 0.6025 17 6 2.5838 -8.9463 -1.4099 18 6 3.0739 -8.2004 -2.4690 19 6 3.3107 -8.7998 -3.6905 20 6 3.0521 -10.1474 -3.8595 21 6 2.5688 -10.8941 -2.8030 22 6 2.3310 -10.2949 -1.5771 23 6 1.8057 -10.8812 -0.2843 24 6 1.3528 -9.6676 0.5549 25 1 1.5432 -9.8366 1.6147 26 8 -0.0287 -9.3806 0.3287 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5572 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 2.8712 -3.6040 0.8923 31 1 2.8725 -3.6049 -0.8877 32 1 0.5427 -4.9308 0.0016 33 1 0.5426 -7.2652 0.0052 34 1 3.2718 -7.1466 -2.3392 35 1 3.6933 -8.2153 -4.5142 36 1 3.2325 -10.6167 -4.8153 37 1 2.3712 -11.9477 -2.9344 38 1 0.9604 -11.5397 -0.4836 39 1 2.5960 -11.4250 0.2331 40 1 -0.6256 -10.0994 0.5776 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273190984.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:23 Heat of formation + Delta-G solvation = -84.756116 kcal Electronic energy + Delta-G solvation = -22496.365584 eV Core-core repulsion = 19081.419890 eV Total energy + Delta-G solvation = -3414.945694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.74403 -40.43005 -38.22933 -36.66152 -35.50377 -34.84307 -34.18701 -32.06660 -31.17016 -29.21013 -27.81125 -26.36300 -23.49433 -23.08992 -22.30495 -21.93609 -21.46302 -19.49446 -18.52762 -18.24687 -17.78569 -16.85756 -16.50262 -16.41120 -16.31765 -16.23340 -15.62540 -15.20950 -15.04323 -14.81217 -14.28879 -14.25354 -14.03048 -13.80870 -13.73961 -13.22349 -12.94578 -12.58180 -12.53144 -12.39078 -12.24908 -12.15049 -11.82666 -11.68342 -11.51348 -11.21094 -11.03290 -10.61131 -10.33050 -9.79057 -9.71620 -9.52373 -8.24427 -6.35106 0.37139 0.44670 1.41236 1.42256 1.53698 1.76813 2.14939 2.40979 2.81484 3.04015 3.10122 3.39747 3.48934 3.61723 4.00794 4.04075 4.13820 4.20938 4.41512 4.50139 4.50607 4.58711 4.62212 4.72196 4.82526 4.84624 4.99863 5.09669 5.17572 5.30318 5.43024 5.50686 5.52776 5.57781 5.59438 5.70292 5.78070 6.05267 6.09285 6.16376 6.77868 6.92656 7.14348 7.34179 7.60312 8.87673 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025694 B = 0.003069 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.494320 B = 9120.209453 C = 9732.011158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.735 5.735 12 C 0.697 3.303 13 O -0.636 6.636 14 N -0.717 5.717 15 C 0.199 3.801 16 H 0.093 0.907 17 C -0.128 4.128 18 C -0.113 4.113 19 C -0.138 4.138 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.094 4.094 23 C -0.102 4.102 24 C 0.111 3.889 25 H 0.106 0.894 26 O -0.572 6.572 27 H 0.266 0.734 28 H 0.006 0.994 29 H 0.009 0.991 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.405 0.595 33 H 0.413 0.587 34 H 0.085 0.915 35 H 0.129 0.871 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 -28.040 -1.897 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.038 3.962 11 N -0.389 5.389 12 C 0.396 3.604 13 O -0.518 6.518 14 N -0.374 5.374 15 C 0.093 3.907 16 H 0.110 0.890 17 C -0.130 4.130 18 C -0.132 4.132 19 C -0.156 4.156 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.095 4.095 23 C -0.139 4.139 24 C 0.051 3.949 25 H 0.123 0.877 26 O -0.382 6.382 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.240 0.760 33 H 0.251 0.749 34 H 0.104 0.896 35 H 0.147 0.853 36 H 0.168 0.832 37 H 0.170 0.830 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 1.074 -27.358 -2.076 27.458 hybrid contribution -0.554 1.067 -0.042 1.203 sum 0.520 -26.291 -2.118 26.382 Atomic orbital electron populations 1.70067 1.07569 1.28025 1.50974 1.25892 0.95824 1.03149 0.94353 0.85418 0.78623 0.78307 0.78540 1.19755 1.20377 1.19017 1.21458 0.93594 0.91868 1.51620 0.92293 1.19121 0.94201 0.91698 0.96260 1.21062 0.94589 0.81084 0.99476 1.45240 1.10298 1.04519 1.78882 1.16219 0.85252 0.81295 0.77586 1.90852 1.13399 1.87247 1.60275 1.44783 1.10496 1.02874 1.79205 1.20603 0.95310 0.82149 0.92611 0.88953 1.21012 1.00449 0.95690 0.95811 1.20702 0.99520 0.99092 0.93895 1.21271 1.01235 0.96440 0.96670 1.21397 0.98625 0.93308 1.00125 1.20961 0.99592 1.01123 0.91325 1.20796 0.98792 0.93467 0.96431 1.21867 1.03135 0.97598 0.91332 1.22673 0.81795 0.91224 0.99163 0.87665 1.86338 1.15762 1.47019 1.89103 0.92512 0.97525 0.97283 0.93748 0.94091 0.76032 0.74908 0.89621 0.85317 0.83152 0.83033 0.86958 0.86930 0.74229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 2 C 0.01 0.37 5.46 84.65 0.46 0.84 16 3 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -31.50 9.11 25.60 0.23 -31.27 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.30 5.09 29.85 0.15 1.46 16 10 C 0.16 7.49 5.61 86.38 0.48 7.97 16 11 N -0.73 -28.41 5.56 -478.52 -2.66 -31.07 16 12 C 0.70 26.53 8.02 179.05 1.44 27.96 16 13 O -0.64 -28.95 15.49 -4.01 -0.06 -29.02 16 14 N -0.72 -20.86 5.07 -458.21 -2.32 -23.18 16 15 C 0.20 4.96 3.10 44.91 0.14 5.10 16 16 H 0.09 2.59 7.65 -2.39 -0.02 2.57 16 17 C -0.13 -3.41 5.79 -19.60 -0.11 -3.52 16 18 C -0.11 -3.50 9.87 22.30 0.22 -3.28 16 19 C -0.14 -3.43 10.05 22.24 0.22 -3.21 16 20 C -0.12 -2.20 10.05 22.24 0.22 -1.98 16 21 C -0.11 -1.89 10.04 22.30 0.22 -1.67 16 22 C -0.09 -1.80 6.14 -19.59 -0.12 -1.92 16 23 C -0.10 -1.09 6.51 30.52 0.20 -0.89 16 24 C 0.11 1.56 4.36 31.50 0.14 1.70 16 25 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 26 O -0.57 -7.71 11.87 -148.98 -1.77 -9.48 16 27 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 28 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.01 0.48 8.14 -2.38 -0.02 0.47 16 30 H 0.04 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.40 13.71 8.49 -92.71 -0.79 12.93 16 33 H 0.41 10.61 7.29 -92.71 -0.68 9.94 16 34 H 0.09 3.21 7.08 -2.91 -0.02 3.19 16 35 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.11 0.63 8.10 -2.39 -0.02 0.61 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.41 1.36 9.11 -74.06 -0.67 0.69 16 Total: -1.00 -76.50 338.10 -1.66 -78.16 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -1.05 Total: 25.90 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 3.90 Total: -2.71 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.70 Total: -109.39 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -1.83 Total: -38.50 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -76.50 -1.66 -78.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273190984.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.595 kcal (2) G-P(sol) polarization free energy of solvation -76.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds