Wall clock time and date at job start Tue Mar 31 2020 06:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47267 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99966 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00531 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99906 * 180.02562 * 12 11 10 15 15 C 1.46506 * 120.00271 * 180.02562 * 14 12 11 16 16 H 1.08995 * 110.26232 * 325.69873 * 15 14 12 17 17 C 1.54343 * 110.30347 * 203.62449 * 15 14 12 18 18 C 1.54346 * 102.38498 * 214.73386 * 17 15 14 19 19 C 1.51359 * 105.16437 * 26.33600 * 18 17 15 20 20 C 1.38340 * 109.80687 * 342.73633 * 19 18 17 21 21 C 1.38359 * 119.86165 * 179.89807 * 20 19 18 22 22 C 1.38174 * 120.38033 * 0.17732 * 21 20 19 23 23 C 1.38120 * 119.99946 * 359.91299 * 22 21 20 24 24 C 1.38651 * 119.86875 * 359.97438 * 23 22 21 25 25 O 1.35899 * 119.95014 * 180.02562 * 24 23 22 26 26 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 27 27 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 28 28 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 29 29 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 30 30 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 31 31 H 0.96999 * 119.99984 * 0.02562 * 11 10 9 32 32 H 0.96999 * 120.00043 * 359.97438 * 14 12 11 33 33 H 1.08999 * 110.82467 * 332.95439 * 17 15 14 34 34 H 1.09003 * 110.82156 * 96.31431 * 17 15 14 35 35 H 1.08993 * 110.30663 * 145.25624 * 18 17 15 36 36 H 1.09007 * 110.30370 * 267.41342 * 18 17 15 37 37 H 1.07994 * 119.78572 * 180.08986 * 21 20 19 38 38 H 1.08000 * 120.00414 * 179.89235 * 22 21 20 39 39 H 1.07995 * 120.06911 * 179.97438 * 23 22 21 40 40 H 0.96696 * 114.00830 * 269.98426 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2452 -3.6621 -0.0122 11 7 1.5126 -4.9308 -0.0116 12 6 2.1865 -6.0980 -0.0171 13 8 3.4023 -6.0981 -0.0222 14 7 1.5126 -7.2652 -0.0171 15 6 2.2450 -8.5340 -0.0226 16 1 3.1631 -8.4374 -0.6021 17 6 1.3620 -9.6596 -0.6018 18 6 1.8001 -10.8846 0.2287 19 6 2.3029 -10.3158 1.5382 20 6 2.5608 -8.9643 1.3940 21 6 3.0303 -8.2338 2.4711 22 6 3.2470 -8.8471 3.6902 23 6 2.9930 -10.1965 3.8392 24 6 2.5202 -10.9330 2.7639 25 8 2.2692 -12.2608 2.9088 26 1 -0.4849 0.8401 0.0041 27 1 0.6280 -2.5591 0.8866 28 1 0.6206 -2.5548 -0.8933 29 1 2.8685 -3.6025 -0.9044 30 1 2.8753 -3.6063 0.8756 31 1 0.5427 -4.9308 -0.0080 32 1 0.5426 -7.2652 -0.0127 33 1 0.3054 -9.4429 -0.4448 34 1 1.5717 -9.8105 -1.6608 35 1 0.9514 -11.5455 0.4046 36 1 2.5993 -11.4217 -0.2821 37 1 3.2298 -7.1785 2.3576 38 1 3.6153 -8.2714 4.5264 39 1 3.1624 -10.6771 4.7914 40 1 3.0267 -12.8282 2.7108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273205188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:12 Heat of formation + Delta-G solvation = -83.646541 kcal Electronic energy + Delta-G solvation = -22224.482629 eV Core-core repulsion = 18809.585049 eV Total energy + Delta-G solvation = -3414.897579 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.74115 -40.61144 -38.40049 -36.78060 -36.40868 -34.88376 -34.43162 -31.57540 -30.69641 -29.82393 -27.72342 -26.35850 -23.66624 -23.10630 -22.35792 -21.90337 -21.67855 -19.54271 -18.92269 -18.43692 -17.53564 -17.06161 -16.70378 -16.50038 -16.44907 -16.04271 -15.88138 -15.17740 -15.13121 -14.79029 -14.61127 -14.27037 -13.91714 -13.42014 -13.21656 -13.05320 -12.94725 -12.78807 -12.70144 -12.51803 -12.25512 -12.22518 -11.88352 -11.66302 -11.54919 -11.49560 -11.19168 -10.60597 -10.34963 -9.77738 -9.64119 -9.50973 -8.24285 -6.34526 0.23720 0.28257 1.41747 1.42366 1.53781 1.78511 2.16549 2.41234 2.62431 3.10580 3.28179 3.31081 3.44392 3.61495 3.99749 4.09678 4.16654 4.19230 4.46277 4.51659 4.52259 4.54394 4.64885 4.83380 4.86678 4.92999 5.03476 5.11800 5.15980 5.31500 5.36944 5.45367 5.47136 5.52105 5.59408 5.65255 5.78951 5.84876 6.04612 6.17176 6.78772 6.87172 7.13078 7.34837 7.60981 8.87732 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031260 B = 0.002786 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.508176 B =10049.572370 C =10522.133074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.734 5.734 12 C 0.699 3.301 13 O -0.634 6.634 14 N -0.725 5.725 15 C 0.198 3.802 16 H 0.085 0.915 17 C -0.113 4.113 18 C -0.067 4.067 19 C -0.124 4.124 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.145 4.145 24 C 0.111 3.889 25 O -0.503 6.503 26 H 0.266 0.734 27 H 0.007 0.993 28 H 0.009 0.991 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.406 0.594 32 H 0.411 0.589 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.150 0.850 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 -26.343 2.598 26.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.038 3.962 11 N -0.389 5.389 12 C 0.398 3.602 13 O -0.516 6.516 14 N -0.381 5.381 15 C 0.092 3.908 16 H 0.103 0.897 17 C -0.151 4.151 18 C -0.104 4.104 19 C -0.125 4.125 20 C -0.110 4.110 21 C -0.137 4.137 22 C -0.131 4.131 23 C -0.163 4.163 24 C 0.066 3.934 25 O -0.316 6.316 26 H 0.075 0.925 27 H 0.025 0.975 28 H 0.027 0.973 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.241 0.759 32 H 0.248 0.752 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.192 -26.032 2.727 26.266 hybrid contribution 0.057 1.254 0.140 1.263 sum 2.248 -24.778 2.867 25.044 Atomic orbital electron populations 1.70061 1.07544 1.27999 1.51052 1.25875 0.95802 1.03099 0.94411 0.85442 0.78624 0.78428 0.78550 1.19700 1.20488 1.19083 1.21469 0.93598 0.91922 1.51493 0.92317 1.19117 0.94215 0.91669 0.96292 1.21048 0.94566 0.81130 0.99496 1.45236 1.10362 1.04477 1.78804 1.16185 0.85255 0.81236 0.77479 1.90864 1.13530 1.87223 1.59995 1.45068 1.10064 1.03283 1.79674 1.20478 0.96319 0.82442 0.91531 0.89699 1.22641 0.99950 0.91465 1.01040 1.20967 1.02044 0.97522 0.89907 1.21124 1.01127 0.94488 0.95781 1.20993 0.99321 0.94484 0.96156 1.20709 0.99957 0.99546 0.93440 1.21139 0.99859 0.94989 0.97148 1.21553 1.00512 0.94403 0.99851 1.18093 0.99217 0.84725 0.91368 1.84756 1.41995 1.13499 1.91339 0.92535 0.97452 0.97264 0.93794 0.94056 0.75875 0.75248 0.88838 0.87547 0.88816 0.88243 0.88717 0.84267 0.83270 0.73277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -30.85 9.11 25.60 0.23 -30.62 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.26 5.09 29.85 0.15 1.41 16 10 C 0.16 7.16 5.61 86.38 0.48 7.64 16 11 N -0.73 -26.25 5.56 -478.55 -2.66 -28.92 16 12 C 0.70 24.43 8.13 179.06 1.46 25.89 16 13 O -0.63 -27.42 15.63 -3.98 -0.06 -27.48 16 14 N -0.73 -18.13 5.10 -458.17 -2.34 -20.47 16 15 C 0.20 4.47 3.18 44.92 0.14 4.61 16 16 H 0.09 2.27 7.60 -2.39 -0.02 2.25 16 17 C -0.11 -1.51 6.76 31.51 0.21 -1.30 16 18 C -0.07 -0.88 6.71 30.51 0.20 -0.67 16 19 C -0.12 -2.46 6.11 -19.46 -0.12 -2.57 16 20 C -0.11 -2.67 5.79 -19.60 -0.11 -2.78 16 21 C -0.12 -3.31 9.91 22.28 0.22 -3.09 16 22 C -0.11 -2.60 10.04 22.23 0.22 -2.38 16 23 C -0.14 -2.82 9.98 22.34 0.22 -2.60 16 24 C 0.11 2.11 6.70 22.54 0.15 2.26 16 25 O -0.50 -7.42 13.45 -92.41 -1.24 -8.66 16 26 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.41 12.35 8.49 -92.71 -0.79 11.57 16 32 H 0.41 7.76 8.42 -92.71 -0.78 6.98 16 33 H 0.09 1.04 7.81 -2.39 -0.02 1.02 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 0.98 8.14 -2.38 -0.02 0.97 16 37 H 0.09 3.20 7.30 -2.91 -0.02 3.18 16 38 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 39 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 40 H 0.41 2.06 9.06 -74.06 -0.67 1.39 16 Total: -1.00 -73.91 340.31 -1.21 -75.12 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -1.15 Total: 22.20 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 3.93 Total: -3.35 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -4.71 Total: -103.77 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.30 Total: -36.14 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -73.91 -1.21 -75.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273205188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.524 kcal (2) G-P(sol) polarization free energy of solvation -73.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds