Wall clock time and date at job start Tue Mar 31 2020 06:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00541 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99489 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99511 * 180.02562 * 14 12 11 16 16 H 1.08993 * 110.27545 * 35.61984 * 15 14 12 17 17 C 1.54348 * 110.30049 * 157.79962 * 15 14 12 18 18 C 1.54349 * 102.38733 * 145.26290 * 17 15 14 19 19 C 1.51368 * 105.16174 * 333.66270 * 18 17 15 20 20 C 1.38165 * 109.77994 * 17.18266 * 19 18 17 21 21 C 1.38496 * 119.88433 * 180.02562 * 20 19 18 22 22 C 1.38171 * 120.33025 * 359.96457 * 21 20 19 23 23 C 1.38118 * 120.00003 * 0.03377 * 22 21 20 24 24 C 1.38649 * 119.86971 * 359.97438 * 23 22 21 25 25 O 1.35899 * 119.94757 * 180.02562 * 24 23 22 26 26 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 0.96996 * 119.99606 * 0.02562 * 11 10 9 32 32 H 0.97003 * 120.00377 * 0.02562 * 14 12 11 33 33 H 1.08997 * 110.82628 * 263.49089 * 17 15 14 34 34 H 1.09008 * 110.82371 * 27.03966 * 17 15 14 35 35 H 1.08996 * 110.30385 * 214.74186 * 18 17 15 36 36 H 1.09000 * 110.38805 * 92.62541 * 18 17 15 37 37 H 1.07997 * 119.83577 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.99997 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.06549 * 180.02562 * 23 22 21 40 40 H 0.96697 * 114.00517 * 90.00402 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 7 5.4867 -2.6364 0.0022 12 6 6.1605 -3.8036 0.0037 13 8 5.5527 -4.8566 0.0046 14 7 7.5083 -3.8035 0.0042 15 6 8.2408 -5.0723 0.0052 16 1 7.7101 -5.8153 -0.5900 17 6 9.6695 -4.8663 -0.5414 18 6 10.4930 -5.8645 0.2999 19 6 9.7205 -6.0252 1.5917 20 6 8.4269 -5.5702 1.4226 21 6 7.5341 -5.6202 2.4802 22 6 7.9301 -6.1238 3.7044 23 6 9.2222 -6.5798 3.8783 24 6 10.1195 -6.5315 2.8224 25 8 11.3910 -6.9803 2.9917 26 1 -0.4849 0.8400 -0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8752 -0.6803 -0.8888 29 1 3.6587 -3.1509 -0.8875 30 1 3.6580 -3.1497 0.8925 31 1 5.9716 -1.7964 0.0019 32 1 7.9933 -2.9634 0.0038 33 1 9.7193 -5.1187 -1.6006 34 1 10.0065 -3.8440 -0.3693 35 1 11.4856 -5.4613 0.5004 36 1 10.5712 -6.8216 -0.2157 37 1 6.5233 -5.2640 2.3473 38 1 7.2293 -6.1606 4.5254 39 1 9.5327 -6.9740 4.8347 40 1 11.5071 -7.9188 2.7895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273205196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:15 Heat of formation + Delta-G solvation = -54.343875 kcal Electronic energy + Delta-G solvation = -22289.855592 eV Core-core repulsion = 18876.228672 eV Total energy + Delta-G solvation = -3413.626920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85324 -39.44169 -37.59949 -35.86332 -34.91252 -33.54050 -32.70387 -30.35221 -29.74694 -29.04003 -26.76533 -24.60043 -22.90485 -21.53856 -21.18420 -20.74282 -20.54003 -18.50545 -17.85216 -16.92487 -16.52802 -16.16179 -15.79265 -15.34674 -15.09777 -14.82088 -14.27064 -14.00889 -13.89558 -13.71133 -13.50382 -12.98783 -12.65901 -12.60191 -12.30028 -12.07451 -11.94834 -11.47732 -11.41355 -11.24240 -11.17712 -10.82772 -10.38514 -10.26931 -9.97611 -9.78067 -9.32370 -9.14452 -8.81949 -8.69957 -8.62563 -8.40838 -6.10707 -4.10702 1.08400 1.09966 2.94758 3.25295 3.33044 3.34283 3.44449 3.47983 4.00408 4.07349 4.34477 4.37940 4.55248 4.68563 4.80393 4.89121 4.99024 5.22276 5.27635 5.34900 5.41620 5.49555 5.55084 5.73850 5.78715 5.82780 6.08291 6.18058 6.24736 6.31497 6.37629 6.56639 6.61070 6.63762 6.81557 7.03587 7.24900 7.29368 7.40705 7.67868 8.28623 8.46094 8.89092 8.94332 9.49473 11.02379 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028701 B = 0.002946 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.348818 B = 9500.667346 C = 9838.516823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.149 3.851 11 N -0.742 5.742 12 C 0.699 3.301 13 O -0.592 6.592 14 N -0.745 5.745 15 C 0.204 3.796 16 H 0.105 0.895 17 C -0.124 4.124 18 C -0.073 4.073 19 C -0.122 4.122 20 C -0.090 4.090 21 C -0.090 4.090 22 C -0.107 4.107 23 C -0.143 4.143 24 C 0.108 3.892 25 O -0.499 6.499 26 H 0.265 0.735 27 H 0.021 0.979 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.391 0.609 32 H 0.395 0.605 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.880 -11.706 2.823 27.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.026 3.974 11 N -0.395 5.395 12 C 0.399 3.601 13 O -0.470 6.470 14 N -0.401 5.401 15 C 0.098 3.902 16 H 0.123 0.877 17 C -0.162 4.162 18 C -0.110 4.110 19 C -0.123 4.123 20 C -0.092 4.092 21 C -0.108 4.108 22 C -0.126 4.126 23 C -0.161 4.161 24 C 0.064 3.936 25 O -0.309 6.309 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.224 0.776 32 H 0.229 0.771 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 24.202 -11.970 2.970 27.163 hybrid contribution 0.630 1.230 0.031 1.383 sum 24.832 -10.740 3.002 27.221 Atomic orbital electron populations 1.69904 1.06288 1.27038 1.50483 1.25001 0.94762 0.99138 0.94401 0.86747 0.80255 0.83553 0.78471 1.20248 1.21299 1.19106 1.20919 0.88649 0.94901 1.51567 0.90589 1.19793 0.97920 0.91452 0.96775 1.21372 0.74735 0.99828 1.01471 1.45540 1.08942 1.06262 1.78801 1.16070 0.81304 0.84891 0.77873 1.90910 1.67646 1.30436 1.58016 1.45223 1.05047 1.08463 1.81321 1.20268 0.91989 0.86154 0.91804 0.87734 1.22613 0.92955 1.00400 1.00248 1.20900 0.98731 0.99738 0.91643 1.20780 0.95422 1.01671 0.94440 1.20866 0.93186 0.98913 0.96221 1.20838 1.00042 0.98153 0.91788 1.21002 0.95612 0.98513 0.97430 1.21311 0.93322 1.02546 0.98958 1.17988 0.84047 1.00067 0.91530 1.84812 1.25066 1.30370 1.90658 0.92558 0.96062 0.96478 0.92157 0.92168 0.77579 0.77098 0.89470 0.90137 0.90138 0.89975 0.85439 0.85345 0.85380 0.75873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.02 -0.49 4.16 -27.89 -0.12 -0.61 16 10 C 0.15 3.04 5.61 -4.04 -0.02 3.02 16 11 N -0.74 -12.18 5.56 -65.22 -0.36 -12.54 16 12 C 0.70 11.42 8.02 -86.92 -0.70 10.73 16 13 O -0.59 -11.96 15.48 5.29 0.08 -11.88 16 14 N -0.74 -8.89 5.12 -58.79 -0.30 -9.19 16 15 C 0.20 2.26 3.17 -68.04 -0.22 2.04 16 16 H 0.10 1.33 7.64 -51.93 -0.40 0.93 16 17 C -0.12 -0.94 6.75 -25.32 -0.17 -1.11 16 18 C -0.07 -0.56 6.71 -26.85 -0.18 -0.74 16 19 C -0.12 -1.28 6.11 -104.06 -0.64 -1.92 16 20 C -0.09 -1.09 5.78 -104.22 -0.60 -1.69 16 21 C -0.09 -1.18 9.86 -39.51 -0.39 -1.57 16 22 C -0.11 -1.21 10.04 -39.65 -0.40 -1.60 16 23 C -0.14 -1.47 9.98 -39.47 -0.39 -1.86 16 24 C 0.11 1.12 6.70 -39.17 -0.26 0.86 16 25 O -0.50 -4.34 13.45 -19.42 -0.26 -4.60 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 27 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 28 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.39 5.33 8.49 -40.82 -0.35 4.98 16 32 H 0.40 3.63 8.40 -40.82 -0.34 3.29 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.54 7.80 -51.92 -0.41 0.13 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.13 1.94 7.06 -52.49 -0.37 1.57 16 38 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.39 1.54 9.06 45.56 0.41 1.95 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -34.53 336.16 -8.95 -43.48 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.76 Total: 7.44 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -4.52 Total: -7.54 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.11 Total: -48.34 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.18 Total: -16.49 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.53 -8.95 -43.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273205196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.862 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds