Wall clock time and date at job start Tue Mar 31 2020 06:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00541 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99489 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99511 * 180.02562 * 14 12 11 16 16 H 1.08993 * 110.27545 * 35.61984 * 15 14 12 17 17 C 1.54348 * 110.30049 * 157.79962 * 15 14 12 18 18 C 1.54349 * 102.38733 * 145.26290 * 17 15 14 19 19 C 1.51368 * 105.16174 * 333.66270 * 18 17 15 20 20 C 1.38165 * 109.77994 * 17.18266 * 19 18 17 21 21 C 1.38496 * 119.88433 * 180.02562 * 20 19 18 22 22 C 1.38171 * 120.33025 * 359.96457 * 21 20 19 23 23 C 1.38118 * 120.00003 * 0.03377 * 22 21 20 24 24 C 1.38649 * 119.86971 * 359.97438 * 23 22 21 25 25 O 1.35899 * 119.94757 * 180.02562 * 24 23 22 26 26 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 0.96996 * 119.99606 * 0.02562 * 11 10 9 32 32 H 0.97003 * 120.00377 * 0.02562 * 14 12 11 33 33 H 1.08997 * 110.82628 * 263.49089 * 17 15 14 34 34 H 1.09008 * 110.82371 * 27.03966 * 17 15 14 35 35 H 1.08996 * 110.30385 * 214.74186 * 18 17 15 36 36 H 1.09000 * 110.38805 * 92.62541 * 18 17 15 37 37 H 1.07997 * 119.83577 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.99997 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.06549 * 180.02562 * 23 22 21 40 40 H 0.96697 * 114.00517 * 90.00402 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 7 5.4867 -2.6364 0.0022 12 6 6.1605 -3.8036 0.0037 13 8 5.5527 -4.8566 0.0046 14 7 7.5083 -3.8035 0.0042 15 6 8.2408 -5.0723 0.0052 16 1 7.7101 -5.8153 -0.5900 17 6 9.6695 -4.8663 -0.5414 18 6 10.4930 -5.8645 0.2999 19 6 9.7205 -6.0252 1.5917 20 6 8.4269 -5.5702 1.4226 21 6 7.5341 -5.6202 2.4802 22 6 7.9301 -6.1238 3.7044 23 6 9.2222 -6.5798 3.8783 24 6 10.1195 -6.5315 2.8224 25 8 11.3910 -6.9803 2.9917 26 1 -0.4849 0.8400 -0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8752 -0.6803 -0.8888 29 1 3.6587 -3.1509 -0.8875 30 1 3.6580 -3.1497 0.8925 31 1 5.9716 -1.7964 0.0019 32 1 7.9933 -2.9634 0.0038 33 1 9.7193 -5.1187 -1.6006 34 1 10.0065 -3.8440 -0.3693 35 1 11.4856 -5.4613 0.5004 36 1 10.5712 -6.8216 -0.2157 37 1 6.5233 -5.2640 2.3473 38 1 7.2293 -6.1606 4.5254 39 1 9.5327 -6.9740 4.8347 40 1 11.5071 -7.9188 2.7895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273205196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:15 Heat of formation + Delta-G solvation = -81.062178 kcal Electronic energy + Delta-G solvation = -22291.014185 eV Core-core repulsion = 18876.228672 eV Total energy + Delta-G solvation = -3414.785513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.75188 -40.62176 -38.40696 -36.80060 -36.43519 -34.86933 -34.44585 -31.96287 -30.74501 -29.85175 -27.80421 -26.32358 -23.66737 -22.82705 -22.37885 -21.91962 -21.67326 -19.53695 -18.95466 -18.87186 -17.54337 -17.08345 -16.71871 -16.46123 -16.27260 -16.03169 -15.90550 -15.29559 -15.17744 -14.78868 -14.65458 -14.56016 -13.93269 -13.42104 -13.34559 -13.07279 -13.02801 -12.79464 -12.69261 -12.24777 -12.17538 -12.15793 -11.86624 -11.76132 -11.55211 -11.52727 -11.25986 -10.78586 -10.36537 -9.79590 -9.64674 -9.51193 -8.29813 -6.37073 0.23354 0.28379 1.39163 1.42027 1.53239 1.76053 2.16239 2.37103 2.62002 3.05242 3.27520 3.31000 3.43288 3.61392 3.99731 4.09749 4.16936 4.19622 4.35242 4.45425 4.51180 4.54338 4.64151 4.76128 4.83266 4.93022 5.03433 5.11147 5.14616 5.18259 5.36829 5.41849 5.44229 5.46592 5.47003 5.64495 5.67570 5.84707 6.03657 6.23537 6.70348 6.86718 7.14481 7.27426 7.61423 8.87093 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028701 B = 0.002946 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.348818 B = 9500.667346 C = 9838.516823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.237 1.237 7 C -0.539 4.539 8 H 0.028 0.972 9 C -0.011 4.011 10 C 0.166 3.834 11 N -0.733 5.733 12 C 0.698 3.302 13 O -0.635 6.635 14 N -0.724 5.724 15 C 0.198 3.802 16 H 0.084 0.916 17 C -0.112 4.112 18 C -0.068 4.068 19 C -0.124 4.124 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.145 4.145 24 C 0.110 3.890 25 O -0.503 6.503 26 H 0.268 0.732 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.409 0.591 32 H 0.412 0.588 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.138 0.862 39 H 0.149 0.851 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.131 -10.580 2.640 31.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.160 1.160 7 C -0.577 4.577 8 H 0.047 0.953 9 C -0.049 4.049 10 C 0.041 3.959 11 N -0.388 5.388 12 C 0.398 3.602 13 O -0.516 6.516 14 N -0.380 5.380 15 C 0.092 3.908 16 H 0.102 0.898 17 C -0.150 4.150 18 C -0.105 4.105 19 C -0.125 4.125 20 C -0.109 4.109 21 C -0.136 4.136 22 C -0.132 4.132 23 C -0.163 4.163 24 C 0.066 3.934 25 O -0.316 6.316 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.245 0.755 32 H 0.249 0.751 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.156 0.844 39 H 0.166 0.834 40 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 28.538 -10.853 2.783 30.659 hybrid contribution -0.696 0.714 0.131 1.006 sum 27.842 -10.139 2.915 29.774 Atomic orbital electron populations 1.70077 1.08595 1.28434 1.52018 1.26088 0.95694 1.03886 0.93675 0.85521 0.79611 0.77273 0.79347 1.18895 1.21309 1.16049 1.21255 0.91599 0.93378 1.51511 0.95327 1.19633 0.94337 0.92881 0.98014 1.20850 0.77211 0.98173 0.99642 1.45137 1.07251 1.07366 1.79026 1.16194 0.82586 0.83960 0.77490 1.90886 1.68964 1.32000 1.59790 1.45039 1.03316 1.09958 1.79645 1.20474 0.93739 0.85045 0.91493 0.89835 1.22638 0.89779 1.01392 1.01157 1.20978 0.98725 1.00679 0.90137 1.21080 0.94977 1.00760 0.95675 1.20990 0.93930 0.99749 0.96249 1.20759 0.99035 1.00327 0.93527 1.21140 0.96597 0.98441 0.97058 1.21548 0.92752 1.02034 1.00015 1.18095 0.84511 0.99448 0.91389 1.84754 1.23818 1.32359 1.90665 0.92323 0.94629 0.94548 0.94049 0.94295 0.75465 0.75068 0.87520 0.88619 0.88811 0.88345 0.88662 0.84382 0.83352 0.73287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.96 42.47 27.47 68.60 1.88 44.35 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.24 -9.34 6.54 99.48 0.65 -8.69 16 7 C -0.54 -31.05 9.66 25.60 0.25 -30.80 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C -0.01 -0.48 4.16 29.85 0.12 -0.36 16 10 C 0.17 6.92 5.61 86.38 0.48 7.41 16 11 N -0.73 -23.55 5.56 -478.53 -2.66 -26.21 16 12 C 0.70 22.90 8.02 179.05 1.44 24.33 16 13 O -0.63 -26.78 15.48 -3.98 -0.06 -26.84 16 14 N -0.72 -16.45 5.12 -458.16 -2.34 -18.79 16 15 C 0.20 4.19 3.17 44.92 0.14 4.33 16 16 H 0.08 2.14 7.64 -2.39 -0.02 2.12 16 17 C -0.11 -1.33 6.75 31.51 0.21 -1.11 16 18 C -0.07 -0.82 6.71 30.52 0.20 -0.61 16 19 C -0.12 -2.35 6.11 -19.50 -0.12 -2.46 16 20 C -0.11 -2.55 5.78 -19.60 -0.11 -2.67 16 21 C -0.12 -3.23 9.86 22.32 0.22 -3.01 16 22 C -0.11 -2.58 10.04 22.23 0.22 -2.36 16 23 C -0.15 -2.77 9.98 22.34 0.22 -2.54 16 24 C 0.11 2.04 6.70 22.54 0.15 2.19 16 25 O -0.50 -7.15 13.45 -92.42 -1.24 -8.40 16 26 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 27 H 0.04 1.51 7.20 -2.39 -0.02 1.49 16 28 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.41 10.17 8.49 -92.71 -0.79 9.38 16 32 H 0.41 6.54 8.40 -92.71 -0.78 5.76 16 33 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 0.88 7.80 -2.38 -0.02 0.86 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.10 3.17 7.06 -2.91 -0.02 3.15 16 38 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 40 H 0.41 1.89 9.06 -74.06 -0.67 1.22 16 Total: -1.00 -78.72 336.16 -1.43 -80.15 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -1.20 Total: 22.11 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 3.90 Total: -6.99 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -4.71 Total: -104.38 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.30 Total: -35.24 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.35 kcal Total: -78.72 -1.43 -80.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273205196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.917 kcal (2) G-P(sol) polarization free energy of solvation -78.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds