Wall clock time and date at job start Tue Mar 31 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00389 * 2 1 4 4 H 1.48503 * 109.47432 * 270.00318 * 3 2 1 5 5 H 1.48504 * 109.46822 * 30.00286 * 3 2 1 6 6 H 1.48498 * 109.47073 * 150.00126 * 3 2 1 7 7 C 1.37880 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00347 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46815 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.46703 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99704 * 185.14237 * 11 10 9 13 13 H 1.09000 * 109.24923 * 326.37135 * 12 11 10 14 14 C 1.52734 * 109.25180 * 85.83886 * 12 11 10 15 15 C 1.53334 * 108.37028 * 171.35709 * 14 12 11 16 16 C 1.52734 * 108.37683 * 290.07753 * 15 14 12 17 17 C 1.50627 * 110.58895 * 51.05938 * 16 15 14 18 18 C 1.38914 * 117.75527 * 162.52809 * 17 16 15 19 19 C 1.37930 * 120.55268 * 179.78504 * 18 17 16 20 20 C 1.38262 * 119.76870 * 359.97438 * 19 18 17 21 21 N 1.48016 * 120.11545 * 180.08226 * 20 19 18 22 22 O 1.21801 * 120.00070 * 0.02562 * 21 20 19 23 23 O 1.21803 * 120.00180 * 180.02562 * 21 20 19 24 24 C 1.37931 * 119.77298 * 0.10680 * 20 19 18 25 25 C 1.37664 * 122.56942 * 342.46431 * 17 16 15 26 26 H 0.97006 * 119.99907 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47494 * 59.99921 * 9 7 2 28 28 H 1.09008 * 109.46881 * 299.99318 * 9 7 2 29 29 H 1.08998 * 109.46660 * 299.99282 * 10 9 7 30 30 H 1.09000 * 109.47285 * 59.99177 * 10 9 7 31 31 H 1.00898 * 111.00307 * 61.19033 * 11 10 9 32 32 H 1.08996 * 109.69044 * 291.08123 * 14 12 11 33 33 H 1.09000 * 109.68332 * 51.60701 * 14 12 11 34 34 H 1.08997 * 109.68439 * 49.80327 * 15 14 12 35 35 H 1.09002 * 109.68142 * 170.35474 * 15 14 12 36 36 H 1.09005 * 109.25142 * 171.34403 * 16 15 14 37 37 H 1.09002 * 109.25315 * 290.77040 * 16 15 14 38 38 H 1.08008 * 119.71999 * 359.76099 * 18 17 16 39 39 H 1.07992 * 120.11852 * 179.97438 * 19 18 17 40 40 H 1.08001 * 119.73408 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 7 1.5105 -4.9343 -0.0020 12 6 2.4301 -6.0732 0.1212 13 1 3.3644 -5.8375 -0.3884 14 6 2.7143 -6.3335 1.5991 15 6 3.4942 -7.6484 1.7170 16 6 2.5541 -8.7992 1.3639 17 6 1.8679 -8.5381 0.0487 18 6 1.2780 -9.6164 -0.5985 19 6 0.6304 -9.4420 -1.8038 20 6 0.5668 -8.1836 -2.3731 21 7 -0.1278 -7.9874 -3.6654 22 8 -0.6451 -8.9353 -4.2289 23 8 -0.1822 -6.8780 -4.1653 24 6 1.1532 -7.1118 -1.7330 25 6 1.8077 -7.2858 -0.5200 26 1 -0.4850 0.8401 0.0004 27 1 0.6245 -2.5563 -0.8919 28 1 0.6239 -2.5575 0.8881 29 1 2.8723 -3.6041 -0.8910 30 1 2.8712 -3.6048 0.8890 31 1 0.9369 -5.0203 -0.8276 32 1 3.3083 -5.5164 2.0083 33 1 1.7743 -6.4134 2.1452 34 1 4.3376 -7.6382 1.0265 35 1 3.8564 -7.7702 2.7378 36 1 3.1280 -9.7232 1.2926 37 1 1.8029 -8.9028 2.1469 38 1 1.3273 -10.5997 -0.1544 39 1 0.1746 -10.2853 -2.3011 40 1 1.1035 -6.1292 -2.1785 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278633741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:03 Heat of formation + Delta-G solvation = 5.235660 kcal Electronic energy + Delta-G solvation = -22623.432035 eV Core-core repulsion = 19212.388677 eV Total energy + Delta-G solvation = -3411.043358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.23900 -40.62858 -37.11971 -36.57249 -35.42109 -33.28657 -31.83119 -31.29256 -29.65573 -27.92835 -26.31176 -24.41630 -23.50142 -22.81513 -21.88554 -20.61304 -20.16921 -18.79963 -18.62514 -17.55046 -16.61949 -16.28889 -16.01035 -15.53816 -14.90254 -14.73789 -14.48224 -14.21911 -13.72478 -13.54950 -13.26887 -12.94267 -12.50414 -12.27791 -12.13512 -11.99478 -11.59714 -11.38432 -11.21444 -11.18444 -11.15793 -10.99503 -10.90616 -10.62722 -10.52598 -10.07011 -9.57088 -9.44797 -9.42087 -9.15549 -8.37414 -7.99998 -6.01348 -4.04600 -0.27682 0.68226 1.22573 1.33644 2.99300 3.31271 3.37590 3.40113 4.03886 4.10225 4.25157 4.32787 4.47038 4.49605 4.57509 4.75996 4.86117 5.04341 5.09968 5.18710 5.26856 5.34781 5.37570 5.46986 5.49569 5.56782 5.63990 5.81673 5.94837 6.07201 6.10687 6.18700 6.22205 6.34723 6.36804 6.89508 7.30787 7.59712 7.60815 7.71077 7.85026 8.03194 8.39110 9.02403 9.59507 11.09996 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.003936 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.871599 B = 7112.795421 C = 8706.328126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.064 3.936 11 N -0.686 5.686 12 C 0.124 3.876 13 H 0.060 0.940 14 C -0.108 4.108 15 C -0.122 4.122 16 C -0.087 4.087 17 C -0.018 4.018 18 C -0.121 4.121 19 C -0.061 4.061 20 C -0.045 4.045 21 N 0.029 4.971 22 O -0.167 6.167 23 O -0.155 6.155 24 C -0.051 4.051 25 C -0.066 4.066 26 H 0.261 0.739 27 H 0.015 0.985 28 H 0.026 0.974 29 H 0.018 0.982 30 H 0.062 0.938 31 H 0.336 0.664 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.596 -22.327 1.881 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.063 4.063 11 N -0.319 5.319 12 C 0.014 3.986 13 H 0.078 0.922 14 C -0.147 4.147 15 C -0.160 4.160 16 C -0.124 4.124 17 C -0.019 4.019 18 C -0.140 4.140 19 C -0.080 4.080 20 C -0.128 4.128 21 N 0.548 4.452 22 O -0.382 6.382 23 O -0.372 6.372 24 C -0.071 4.071 25 C -0.068 4.068 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.157 0.843 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.628 -22.264 3.164 23.181 hybrid contribution 0.497 1.027 -1.410 1.814 sum 6.125 -21.237 1.754 22.172 Atomic orbital electron populations 1.69970 1.06048 1.26665 1.50365 1.24994 0.94825 0.99220 0.95212 0.86590 0.79795 0.83464 0.78116 1.20647 1.21176 1.19905 1.21141 0.92927 0.90950 1.51246 0.92771 1.19057 0.93971 0.90221 0.97880 1.22278 0.97029 0.88111 0.98905 1.60849 1.23220 1.01540 1.46284 1.20422 0.94548 0.87523 0.96099 0.92207 1.21593 1.01196 0.96785 0.95080 1.21614 0.97928 0.94274 1.02216 1.20655 0.98819 0.99802 0.93141 1.20116 0.93909 0.91945 0.95887 1.21190 0.98636 0.99769 0.94380 1.20924 0.96616 0.95279 0.95217 1.20958 1.06726 0.97209 0.87926 1.43627 0.98930 1.00443 1.02151 1.94506 1.46684 1.33783 1.63186 1.94597 1.63904 1.11206 1.67480 1.21103 0.93025 0.98901 0.94024 1.19833 0.98080 0.95521 0.93319 0.92927 0.96699 0.95597 0.96325 0.91970 0.84304 0.90626 0.90365 0.91530 0.90610 0.89890 0.89201 0.83692 0.83088 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.67 5.28 -27.88 -0.15 0.52 16 10 C 0.06 1.29 5.38 -3.82 -0.02 1.27 16 11 N -0.69 -11.46 6.27 -108.13 -0.68 -12.14 16 12 C 0.12 1.60 2.52 -69.03 -0.17 1.43 16 13 H 0.06 0.78 7.82 -51.93 -0.41 0.38 16 14 C -0.11 -1.21 5.40 -26.69 -0.14 -1.36 16 15 C -0.12 -0.96 5.98 -26.70 -0.16 -1.12 16 16 C -0.09 -0.59 5.67 -28.06 -0.16 -0.75 16 17 C -0.02 -0.16 5.74 -104.62 -0.60 -0.76 16 18 C -0.12 -0.95 9.61 -39.44 -0.38 -1.33 16 19 C -0.06 -0.59 9.56 -39.69 -0.38 -0.97 16 20 C -0.05 -0.57 6.85 -80.05 -0.55 -1.12 16 21 N 0.03 0.44 4.45 33.91 0.15 0.59 16 22 O -0.17 -2.48 18.47 -29.46 -0.54 -3.02 16 23 O -0.15 -2.56 18.45 -29.46 -0.54 -3.10 16 24 C -0.05 -0.65 8.35 -39.44 -0.33 -0.98 16 25 C -0.07 -0.77 5.55 -104.61 -0.58 -1.35 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.72 8.14 -51.92 -0.42 0.29 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 1.22 7.54 -51.93 -0.39 0.82 16 31 H 0.34 5.61 6.10 -39.29 -0.24 5.37 16 32 H 0.08 0.90 7.65 -51.93 -0.40 0.50 16 33 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.15 0.67 8.05 -52.48 -0.42 0.25 16 39 H 0.15 1.20 7.63 -52.49 -0.40 0.80 16 40 H 0.15 2.08 6.10 -52.49 -0.32 1.76 16 LS Contribution 334.22 15.07 5.04 5.04 Total: -1.00 -31.52 334.22 -10.39 -41.91 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.50 Total: 0.25 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -4.03 Total: -19.92 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.21 Total: -37.68 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -1.09 Total: -6.13 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.52 -10.39 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278633741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.144 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds