Wall clock time and date at job start Tue Mar 31 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00389 * 2 1 4 4 H 1.48503 * 109.47432 * 270.00318 * 3 2 1 5 5 H 1.48504 * 109.46822 * 30.00286 * 3 2 1 6 6 H 1.48498 * 109.47073 * 150.00126 * 3 2 1 7 7 C 1.37880 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00347 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46815 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.46703 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99704 * 185.14237 * 11 10 9 13 13 H 1.09000 * 109.24923 * 326.37135 * 12 11 10 14 14 C 1.52734 * 109.25180 * 85.83886 * 12 11 10 15 15 C 1.53334 * 108.37028 * 171.35709 * 14 12 11 16 16 C 1.52734 * 108.37683 * 290.07753 * 15 14 12 17 17 C 1.50627 * 110.58895 * 51.05938 * 16 15 14 18 18 C 1.38914 * 117.75527 * 162.52809 * 17 16 15 19 19 C 1.37930 * 120.55268 * 179.78504 * 18 17 16 20 20 C 1.38262 * 119.76870 * 359.97438 * 19 18 17 21 21 N 1.48016 * 120.11545 * 180.08226 * 20 19 18 22 22 O 1.21801 * 120.00070 * 0.02562 * 21 20 19 23 23 O 1.21803 * 120.00180 * 180.02562 * 21 20 19 24 24 C 1.37931 * 119.77298 * 0.10680 * 20 19 18 25 25 C 1.37664 * 122.56942 * 342.46431 * 17 16 15 26 26 H 0.97006 * 119.99907 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47494 * 59.99921 * 9 7 2 28 28 H 1.09008 * 109.46881 * 299.99318 * 9 7 2 29 29 H 1.08998 * 109.46660 * 299.99282 * 10 9 7 30 30 H 1.09000 * 109.47285 * 59.99177 * 10 9 7 31 31 H 1.00898 * 111.00307 * 61.19033 * 11 10 9 32 32 H 1.08996 * 109.69044 * 291.08123 * 14 12 11 33 33 H 1.09000 * 109.68332 * 51.60701 * 14 12 11 34 34 H 1.08997 * 109.68439 * 49.80327 * 15 14 12 35 35 H 1.09002 * 109.68142 * 170.35474 * 15 14 12 36 36 H 1.09005 * 109.25142 * 171.34403 * 16 15 14 37 37 H 1.09002 * 109.25315 * 290.77040 * 16 15 14 38 38 H 1.08008 * 119.71999 * 359.76099 * 18 17 16 39 39 H 1.07992 * 120.11852 * 179.97438 * 19 18 17 40 40 H 1.08001 * 119.73408 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 7 1.5105 -4.9343 -0.0020 12 6 2.4301 -6.0732 0.1212 13 1 3.3644 -5.8375 -0.3884 14 6 2.7143 -6.3335 1.5991 15 6 3.4942 -7.6484 1.7170 16 6 2.5541 -8.7992 1.3639 17 6 1.8679 -8.5381 0.0487 18 6 1.2780 -9.6164 -0.5985 19 6 0.6304 -9.4420 -1.8038 20 6 0.5668 -8.1836 -2.3731 21 7 -0.1278 -7.9874 -3.6654 22 8 -0.6451 -8.9353 -4.2289 23 8 -0.1822 -6.8780 -4.1653 24 6 1.1532 -7.1118 -1.7330 25 6 1.8077 -7.2858 -0.5200 26 1 -0.4850 0.8401 0.0004 27 1 0.6245 -2.5563 -0.8919 28 1 0.6239 -2.5575 0.8881 29 1 2.8723 -3.6041 -0.8910 30 1 2.8712 -3.6048 0.8890 31 1 0.9369 -5.0203 -0.8276 32 1 3.3083 -5.5164 2.0083 33 1 1.7743 -6.4134 2.1452 34 1 4.3376 -7.6382 1.0265 35 1 3.8564 -7.7702 2.7378 36 1 3.1280 -9.7232 1.2926 37 1 1.8029 -8.9028 2.1469 38 1 1.3273 -10.5997 -0.1544 39 1 0.1746 -10.2853 -2.3011 40 1 1.1035 -6.1292 -2.1785 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278633741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:03 Heat of formation + Delta-G solvation = -13.134840 kcal Electronic energy + Delta-G solvation = -22624.228639 eV Core-core repulsion = 19212.388677 eV Total energy + Delta-G solvation = -3411.839962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.33194 -41.51042 -38.20385 -37.73199 -36.52649 -35.12261 -33.18040 -32.18207 -30.99891 -29.21209 -27.40050 -26.12207 -24.46890 -23.72664 -22.98694 -22.28707 -21.07923 -19.84899 -19.68215 -18.67412 -18.54265 -17.44444 -16.87962 -16.72167 -16.40337 -16.01352 -15.52937 -15.07164 -14.98656 -14.47646 -14.40831 -14.24038 -13.75731 -13.63254 -13.23089 -12.98480 -12.94338 -12.84660 -12.75485 -12.46581 -12.41687 -12.37816 -12.09921 -11.95547 -11.69166 -11.45434 -11.40259 -11.22254 -10.59790 -10.37034 -10.25869 -9.36439 -8.22403 -6.34657 -1.29988 -0.12201 0.23444 0.33334 1.39059 1.40892 1.51870 2.17646 2.38835 3.11330 3.13575 3.19660 3.37307 3.50302 3.71327 3.74944 3.97703 4.10334 4.22977 4.28063 4.34643 4.45638 4.49321 4.57690 4.59586 4.69864 4.83529 4.90574 4.97445 5.01894 5.07272 5.20861 5.23077 5.31478 5.39122 5.45180 5.49814 5.60938 5.74439 6.04794 6.18639 6.33435 6.41009 6.82610 7.35134 8.89941 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.003936 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.871599 B = 7112.795421 C = 8706.328126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.032 3.968 10 C 0.085 3.915 11 N -0.694 5.694 12 C 0.124 3.876 13 H 0.057 0.943 14 C -0.108 4.108 15 C -0.116 4.116 16 C -0.086 4.086 17 C -0.005 4.005 18 C -0.102 4.102 19 C -0.053 4.053 20 C -0.066 4.066 21 N 0.032 4.968 22 O -0.145 6.145 23 O -0.224 6.224 24 C -0.069 4.069 25 C -0.081 4.081 26 H 0.264 0.736 27 H -0.016 1.016 28 H -0.005 1.005 29 H 0.018 0.982 30 H 0.069 0.931 31 H 0.332 0.668 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.195 0.805 39 H 0.174 0.826 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.512 -25.313 3.662 26.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.005 4.005 10 C -0.044 4.044 11 N -0.327 5.327 12 C 0.015 3.985 13 H 0.074 0.926 14 C -0.146 4.146 15 C -0.154 4.154 16 C -0.122 4.122 17 C -0.006 4.006 18 C -0.120 4.120 19 C -0.072 4.072 20 C -0.149 4.149 21 N 0.545 4.455 22 O -0.369 6.369 23 O -0.426 6.426 24 C -0.088 4.088 25 C -0.082 4.082 26 H 0.073 0.927 27 H 0.003 0.997 28 H 0.014 0.986 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.124 0.876 38 H 0.212 0.788 39 H 0.192 0.808 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.575 -25.141 4.929 26.716 hybrid contribution -0.126 1.764 -1.890 2.588 sum 7.449 -23.377 3.039 24.723 Atomic orbital electron populations 1.70119 1.07964 1.27842 1.51339 1.26000 0.95733 1.03498 0.94532 0.85404 0.78724 0.78186 0.78463 1.19912 1.20690 1.18376 1.21599 0.93579 0.92097 1.51053 0.91898 1.18906 0.94321 0.92445 0.94859 1.21850 0.95451 0.87929 0.99132 1.60785 1.23982 1.01703 1.46192 1.20499 0.93539 0.86705 0.97770 0.92574 1.21600 1.01153 0.98833 0.93051 1.21605 0.97718 0.92389 1.03698 1.20813 0.99089 1.00641 0.91652 1.20537 0.92647 0.90844 0.96612 1.21706 0.96171 1.01274 0.92889 1.21361 0.95946 0.94224 0.95689 1.21145 1.08048 0.98650 0.87086 1.43995 0.98634 0.99945 1.02890 1.94443 1.45592 1.33398 1.63464 1.94608 1.66781 1.12005 1.69167 1.20990 0.94568 0.98252 0.95030 1.19740 0.99100 0.96301 0.93086 0.92745 0.99743 0.98634 0.96347 0.91275 0.84774 0.91874 0.91337 0.91249 0.88492 0.86145 0.87621 0.78779 0.80829 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.18 13.29 21.45 0.28 -57.89 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.03 1.75 5.28 29.85 0.16 1.91 16 10 C 0.08 3.56 5.38 86.31 0.46 4.02 16 11 N -0.69 -24.58 6.27 -496.01 -3.11 -27.69 16 12 C 0.12 3.23 2.52 44.06 0.11 3.34 16 13 H 0.06 1.50 7.82 -2.39 -0.02 1.48 16 14 C -0.11 -2.30 5.40 30.62 0.17 -2.13 16 15 C -0.12 -1.39 5.98 30.62 0.18 -1.21 16 16 C -0.09 -0.70 5.67 29.74 0.17 -0.54 16 17 C -0.01 -0.08 5.74 -19.86 -0.11 -0.19 16 18 C -0.10 -1.09 9.61 22.36 0.21 -0.87 16 19 C -0.05 -0.86 9.56 22.20 0.21 -0.65 16 20 C -0.07 -1.67 6.85 36.31 0.25 -1.42 16 21 N 0.03 0.98 4.45 -46.62 -0.21 0.78 16 22 O -0.14 -4.26 18.47 18.89 0.35 -3.91 16 23 O -0.22 -8.19 18.45 18.88 0.35 -7.84 16 24 C -0.07 -1.84 8.35 22.36 0.19 -1.65 16 25 C -0.08 -1.82 5.55 -19.86 -0.11 -1.93 16 26 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 27 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.00 -0.29 8.14 -2.38 -0.02 -0.30 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 2.78 7.54 -2.39 -0.02 2.76 16 31 H 0.33 12.20 6.10 -89.70 -0.55 11.65 16 32 H 0.06 1.47 7.65 -2.39 -0.02 1.46 16 33 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 34 H 0.07 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.12 0.26 8.13 -2.38 -0.02 0.24 16 37 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.20 0.27 8.05 -2.91 -0.02 0.25 16 39 H 0.17 2.04 7.63 -2.91 -0.02 2.01 16 40 H 0.13 3.98 6.10 -2.91 -0.02 3.96 16 Total: -1.00 -73.64 334.22 2.78 -70.86 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.51 Total: 11.01 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 2.58 Total: -32.07 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -3.03 Total: -84.80 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.70 Total: -11.76 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -73.64 2.78 -70.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278633741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.727 kcal (2) G-P(sol) polarization free energy of solvation -73.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds