Wall clock time and date at job start Tue Mar 31 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99970 * 2 1 4 4 H 1.08997 * 109.47166 * 28.36688 * 3 2 1 5 5 C 1.50695 * 109.46999 * 268.36710 * 3 2 1 6 6 O 1.20823 * 120.00161 * 359.97438 * 5 3 2 7 7 O 1.34234 * 120.00214 * 179.97438 * 5 3 2 8 8 C 1.45201 * 117.00256 * 179.97438 * 7 5 3 9 9 C 1.50694 * 109.46992 * 179.97438 * 8 7 5 10 10 C 1.38632 * 119.75330 * 269.72951 * 9 8 7 11 11 C 1.37622 * 120.25203 * 179.72027 * 10 9 8 12 12 C 1.40722 * 119.73885 * 0.57672 * 11 10 9 13 13 C 1.41393 * 120.24079 * 179.67989 * 12 11 10 14 14 H 1.07997 * 120.00259 * 205.65572 * 13 12 11 15 15 C 1.39949 * 119.99832 * 25.65315 * 13 12 11 16 16 N 1.30823 * 120.00278 * 14.60442 * 15 13 12 17 17 Si 1.86802 * 119.99625 * 194.60055 * 15 13 12 18 18 H 1.48498 * 109.47269 * 90.00395 * 17 15 13 19 19 H 1.48505 * 109.47059 * 210.00227 * 17 15 13 20 20 H 1.48499 * 109.47462 * 330.00056 * 17 15 13 21 21 C 1.40715 * 119.51095 * 359.69846 * 12 11 10 22 22 C 1.37613 * 119.75014 * 0.02562 * 21 12 11 23 23 C 1.53002 * 109.46964 * 148.36861 * 3 2 1 24 24 C 1.53001 * 117.50021 * 3.84897 * 23 3 2 25 25 C 1.52995 * 117.50049 * 295.18856 * 23 3 2 26 26 H 1.09001 * 109.47488 * 304.66302 * 1 2 3 27 27 H 1.09005 * 109.47428 * 64.66236 * 1 2 3 28 28 H 1.09002 * 109.47321 * 184.66130 * 1 2 3 29 29 H 1.08998 * 109.47349 * 300.00561 * 8 7 5 30 30 H 1.09003 * 109.46499 * 60.00610 * 8 7 5 31 31 H 1.07999 * 119.87365 * 359.97438 * 10 9 8 32 32 H 1.07993 * 120.13122 * 180.28040 * 11 10 9 33 33 H 0.97001 * 119.99983 * 179.97438 * 16 15 13 34 34 H 1.08008 * 120.12214 * 179.97438 * 21 12 11 35 35 H 1.07996 * 119.87908 * 179.97438 * 22 21 12 36 36 H 1.09002 * 115.55109 * 149.52125 * 23 3 2 37 37 H 1.08997 * 117.49673 * 359.97438 * 24 23 3 38 38 H 1.09000 * 117.49918 * 145.02038 * 24 23 3 39 39 H 1.09000 * 117.50427 * 214.98348 * 25 23 3 40 40 H 1.08999 * 117.49800 * 0.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3319 2.0052 0.4882 5 6 2.2515 1.7479 -1.4202 6 8 1.9564 1.0198 -2.3382 7 8 2.7941 2.9509 -1.6655 8 6 2.9984 3.3106 -3.0573 9 6 3.6113 4.6850 -3.1362 10 6 2.7916 5.8004 -3.2130 11 6 3.3404 7.0608 -3.2796 12 6 4.7392 7.2138 -3.2818 13 6 5.3143 8.5034 -3.3568 14 1 6.3062 8.6294 -3.7651 15 6 4.5982 9.6164 -2.9019 16 7 3.5364 9.4509 -2.1558 17 14 5.1587 11.3385 -3.3600 18 1 4.5075 11.7496 -4.6297 19 1 4.7807 12.2856 -2.2805 20 1 6.6334 11.3493 -3.5340 21 6 5.5614 6.0742 -3.2093 22 6 4.9907 4.8240 -3.1376 23 6 3.3396 1.2718 0.7565 24 6 3.8290 -0.0858 1.2650 25 6 3.2934 0.9541 2.2524 26 1 -0.3634 0.5845 0.8453 27 1 -0.3634 0.4398 -0.9288 28 1 -0.3634 -1.0243 0.0835 29 1 3.6660 2.5872 -3.5254 30 1 2.0402 3.3101 -3.5770 31 1 1.7184 5.6801 -3.2165 32 1 2.7000 7.9286 -3.3349 33 1 3.0403 10.2224 -1.8403 34 1 6.6362 6.1802 -3.2107 35 1 5.6197 3.9478 -3.0823 36 1 4.0924 1.9829 0.4162 37 1 3.2035 -0.9548 1.0609 38 1 4.9037 -0.2677 1.2594 39 1 4.0159 1.4558 2.8962 40 1 2.3159 0.7686 2.6975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279907937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:16 Heat of formation + Delta-G solvation = -91.407094 kcal Electronic energy + Delta-G solvation = -22295.707057 eV Core-core repulsion = 18848.180204 eV Total energy + Delta-G solvation = -3447.526853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.43620 -38.55527 -37.59083 -36.40758 -35.76295 -33.86804 -30.92518 -29.44994 -29.28499 -27.20405 -26.30465 -23.83523 -22.46233 -21.74693 -21.09428 -20.48103 -20.04377 -17.74111 -17.40050 -17.09736 -16.47618 -15.92427 -15.68060 -15.31246 -14.78631 -14.60876 -14.04246 -13.74561 -13.70543 -13.33198 -12.73460 -12.43775 -12.30597 -12.03886 -11.80899 -11.73225 -11.61946 -11.49943 -11.20151 -11.02441 -10.96199 -10.76373 -10.57127 -10.44285 -10.29099 -10.15318 -9.77944 -9.54336 -9.45290 -9.25991 -7.57690 -7.44583 -6.84735 -4.48535 2.32722 2.42130 2.89420 2.99251 3.02459 3.05209 3.20668 3.59320 3.74747 3.85336 4.44735 4.53457 4.73883 4.80063 5.01920 5.11867 5.15974 5.26212 5.35068 5.49225 5.56914 5.60214 5.65633 5.69169 5.79445 6.01458 6.05624 6.15437 6.23738 6.29828 6.75465 6.82928 6.86567 6.97064 7.17047 7.25961 7.50668 7.72305 7.94968 7.99500 8.06818 8.18369 8.53352 8.77980 8.85521 10.08248 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025479 B = 0.003083 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.693245 B = 9080.065017 C = 9293.016604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.354 6.354 3 C 0.129 3.871 4 H 0.102 0.898 5 C 0.437 3.563 6 O -0.507 6.507 7 O -0.347 6.347 8 C 0.135 3.865 9 C -0.233 4.233 10 C -0.077 4.077 11 C -0.167 4.167 12 C 0.118 3.882 13 C -0.456 4.456 14 H 0.080 0.920 15 C 0.073 3.927 16 N -0.789 5.789 17 Si 0.912 3.088 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.228 4.228 22 C -0.065 4.065 23 C -0.159 4.159 24 C -0.162 4.162 25 C -0.167 4.167 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.282 0.718 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.058 -11.419 6.749 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.272 6.272 3 C 0.070 3.930 4 H 0.120 0.880 5 C 0.278 3.722 6 O -0.395 6.395 7 O -0.264 6.264 8 C 0.063 3.937 9 C -0.235 4.235 10 C -0.096 4.096 11 C -0.187 4.187 12 C 0.115 3.885 13 C -0.485 4.485 14 H 0.098 0.902 15 C -0.145 4.145 16 N -0.414 5.414 17 Si 0.737 3.263 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.248 4.248 22 C -0.083 4.083 23 C -0.177 4.177 24 C -0.199 4.199 25 C -0.204 4.204 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.140 0.860 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.147 0.853 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.204 -11.635 6.571 14.008 hybrid contribution -0.093 1.033 -0.319 1.085 sum -4.296 -10.602 6.252 13.036 Atomic orbital electron populations 1.22934 0.80403 1.03237 1.00509 1.87985 1.20263 1.24880 1.94093 1.21045 0.96330 0.86351 0.89303 0.88017 1.24241 0.74711 0.80465 0.92735 1.90623 1.48036 1.54342 1.46534 1.86721 1.72431 1.33575 1.33654 1.21741 0.99523 0.94964 0.77427 1.18691 0.93484 0.91427 1.19883 1.20550 0.96912 0.92863 0.99268 1.21349 0.95597 0.95401 1.06330 1.17698 0.91822 0.92435 0.86544 1.19689 1.02248 0.90945 1.35615 0.90205 1.25967 0.94068 1.01857 0.92602 1.69810 1.14892 1.33237 1.23467 0.86242 0.80287 0.80686 0.79125 1.19198 1.20200 1.18539 1.20985 0.97915 0.92433 1.13433 1.20393 0.93300 0.96185 0.98453 1.22290 0.96777 1.02221 0.96416 1.22927 1.01285 0.93237 1.02417 1.22978 1.03098 1.03294 0.91051 0.93615 0.93435 0.89047 0.92070 0.92123 0.89360 0.86003 0.90687 0.88694 0.89282 0.85308 0.87482 0.88691 0.88226 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.87 101.05 1.10 1.35 16 2 O -0.35 -4.54 8.24 -55.19 -0.45 -5.00 16 3 C 0.13 1.71 2.98 -27.88 -0.08 1.62 16 4 H 0.10 1.15 7.70 -51.93 -0.40 0.75 16 5 C 0.44 7.40 7.29 36.00 0.26 7.66 16 6 O -0.51 -9.77 16.25 -25.47 -0.41 -10.18 16 7 O -0.35 -6.49 9.98 -39.27 -0.39 -6.88 16 8 C 0.14 2.62 5.58 36.00 0.20 2.82 16 9 C -0.23 -5.16 5.54 -104.33 -0.58 -5.74 16 10 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 11 C -0.17 -4.27 8.69 -38.87 -0.34 -4.61 16 12 C 0.12 3.07 5.57 -106.82 -0.60 2.48 16 13 C -0.46 -11.77 9.07 -37.74 -0.34 -12.11 16 14 H 0.08 1.97 7.89 -52.49 -0.41 1.56 16 15 C 0.07 1.79 5.20 -17.34 -0.09 1.70 16 16 N -0.79 -19.83 10.84 55.55 0.60 -19.23 16 17 Si 0.91 18.10 29.58 -169.99 -5.03 13.07 16 18 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 19 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 21 C -0.23 -5.50 9.80 -38.87 -0.38 -5.88 16 22 C -0.06 -1.45 9.67 -39.66 -0.38 -1.83 16 23 C -0.16 -1.92 5.69 -90.62 -0.52 -2.43 16 24 C -0.16 -1.71 9.87 -26.69 -0.26 -1.97 16 25 C -0.17 -1.60 10.24 -26.70 -0.27 -1.87 16 26 H 0.05 0.35 7.98 -51.93 -0.41 -0.06 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 30 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 31 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.12 3.19 6.12 -52.49 -0.32 2.87 16 33 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 34 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.13 1.68 7.91 -51.93 -0.41 1.27 16 37 H 0.11 1.17 7.03 -51.93 -0.36 0.81 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -28.84 345.88 -8.82 -37.66 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.68 Total: 6.35 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -2.66 Total: -21.00 kcal Atomic # 7 Polarization: -19.83 SS G_CDS: 0.60 Total: -19.23 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.26 Total: -22.07 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.84 -8.82 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279907937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.744 kcal (2) G-P(sol) polarization free energy of solvation -28.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds