Wall clock time and date at job start Tue Mar 31 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99970 * 2 1 4 4 H 1.08997 * 109.47166 * 28.36688 * 3 2 1 5 5 C 1.50695 * 109.46999 * 268.36710 * 3 2 1 6 6 O 1.20823 * 120.00161 * 359.97438 * 5 3 2 7 7 O 1.34234 * 120.00214 * 179.97438 * 5 3 2 8 8 C 1.45201 * 117.00256 * 179.97438 * 7 5 3 9 9 C 1.50694 * 109.46992 * 179.97438 * 8 7 5 10 10 C 1.38632 * 119.75330 * 269.72951 * 9 8 7 11 11 C 1.37622 * 120.25203 * 179.72027 * 10 9 8 12 12 C 1.40722 * 119.73885 * 0.57672 * 11 10 9 13 13 C 1.41393 * 120.24079 * 179.67989 * 12 11 10 14 14 H 1.07997 * 120.00259 * 205.65572 * 13 12 11 15 15 C 1.39949 * 119.99832 * 25.65315 * 13 12 11 16 16 N 1.30823 * 120.00278 * 14.60442 * 15 13 12 17 17 Si 1.86802 * 119.99625 * 194.60055 * 15 13 12 18 18 H 1.48498 * 109.47269 * 90.00395 * 17 15 13 19 19 H 1.48505 * 109.47059 * 210.00227 * 17 15 13 20 20 H 1.48499 * 109.47462 * 330.00056 * 17 15 13 21 21 C 1.40715 * 119.51095 * 359.69846 * 12 11 10 22 22 C 1.37613 * 119.75014 * 0.02562 * 21 12 11 23 23 C 1.53002 * 109.46964 * 148.36861 * 3 2 1 24 24 C 1.53001 * 117.50021 * 3.84897 * 23 3 2 25 25 C 1.52995 * 117.50049 * 295.18856 * 23 3 2 26 26 H 1.09001 * 109.47488 * 304.66302 * 1 2 3 27 27 H 1.09005 * 109.47428 * 64.66236 * 1 2 3 28 28 H 1.09002 * 109.47321 * 184.66130 * 1 2 3 29 29 H 1.08998 * 109.47349 * 300.00561 * 8 7 5 30 30 H 1.09003 * 109.46499 * 60.00610 * 8 7 5 31 31 H 1.07999 * 119.87365 * 359.97438 * 10 9 8 32 32 H 1.07993 * 120.13122 * 180.28040 * 11 10 9 33 33 H 0.97001 * 119.99983 * 179.97438 * 16 15 13 34 34 H 1.08008 * 120.12214 * 179.97438 * 21 12 11 35 35 H 1.07996 * 119.87908 * 179.97438 * 22 21 12 36 36 H 1.09002 * 115.55109 * 149.52125 * 23 3 2 37 37 H 1.08997 * 117.49673 * 359.97438 * 24 23 3 38 38 H 1.09000 * 117.49918 * 145.02038 * 24 23 3 39 39 H 1.09000 * 117.50427 * 214.98348 * 25 23 3 40 40 H 1.08999 * 117.49800 * 0.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3319 2.0052 0.4882 5 6 2.2515 1.7479 -1.4202 6 8 1.9564 1.0198 -2.3382 7 8 2.7941 2.9509 -1.6655 8 6 2.9984 3.3106 -3.0573 9 6 3.6113 4.6850 -3.1362 10 6 2.7916 5.8004 -3.2130 11 6 3.3404 7.0608 -3.2796 12 6 4.7392 7.2138 -3.2818 13 6 5.3143 8.5034 -3.3568 14 1 6.3062 8.6294 -3.7651 15 6 4.5982 9.6164 -2.9019 16 7 3.5364 9.4509 -2.1558 17 14 5.1587 11.3385 -3.3600 18 1 4.5075 11.7496 -4.6297 19 1 4.7807 12.2856 -2.2805 20 1 6.6334 11.3493 -3.5340 21 6 5.5614 6.0742 -3.2093 22 6 4.9907 4.8240 -3.1376 23 6 3.3396 1.2718 0.7565 24 6 3.8290 -0.0858 1.2650 25 6 3.2934 0.9541 2.2524 26 1 -0.3634 0.5845 0.8453 27 1 -0.3634 0.4398 -0.9288 28 1 -0.3634 -1.0243 0.0835 29 1 3.6660 2.5872 -3.5254 30 1 2.0402 3.3101 -3.5770 31 1 1.7184 5.6801 -3.2165 32 1 2.7000 7.9286 -3.3349 33 1 3.0403 10.2224 -1.8403 34 1 6.6362 6.1802 -3.2107 35 1 5.6197 3.9478 -3.0823 36 1 4.0924 1.9829 0.4162 37 1 3.2035 -0.9548 1.0609 38 1 4.9037 -0.2677 1.2594 39 1 4.0159 1.4558 2.8962 40 1 2.3159 0.7686 2.6975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279907937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:15 Heat of formation + Delta-G solvation = -104.427758 kcal Electronic energy + Delta-G solvation = -22296.271676 eV Core-core repulsion = 18848.180204 eV Total energy + Delta-G solvation = -3448.091472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.74796 -39.79700 -39.22669 -37.57099 -36.94311 -35.68266 -32.67331 -31.25481 -30.48158 -28.78939 -27.27026 -25.54083 -23.25846 -23.00335 -22.87426 -21.88904 -21.51570 -19.27768 -18.98217 -18.30115 -17.70965 -17.27747 -16.92362 -16.73923 -16.19023 -15.70247 -15.59845 -15.35604 -15.02491 -14.39057 -14.23624 -13.94998 -13.88965 -13.73312 -13.53545 -12.85958 -12.71814 -12.67534 -12.58576 -12.49682 -12.27674 -12.18485 -12.02460 -11.73303 -11.53419 -11.38532 -11.29646 -11.14144 -11.09483 -10.63217 -9.45027 -9.32576 -8.66498 -6.41525 0.69776 1.04430 1.09683 1.38591 1.42605 1.52474 1.77697 2.19722 2.56657 2.73446 2.91055 3.48494 3.65733 3.79820 3.85541 4.05517 4.06841 4.08319 4.22791 4.38757 4.43393 4.46029 4.50122 4.50932 4.53171 4.78589 4.84478 4.99449 5.00241 5.11424 5.22014 5.29205 5.34896 5.38281 5.43052 5.64166 5.84805 5.86789 6.05028 6.12803 6.30937 6.63739 6.69365 6.88206 6.95977 8.29237 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025479 B = 0.003083 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.693245 B = 9080.065017 C = 9293.016604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.366 6.366 3 C 0.136 3.864 4 H 0.123 0.877 5 C 0.436 3.564 6 O -0.533 6.533 7 O -0.356 6.356 8 C 0.140 3.860 9 C -0.229 4.229 10 C -0.082 4.082 11 C -0.190 4.190 12 C 0.088 3.912 13 C -0.492 4.492 14 H 0.079 0.921 15 C 0.034 3.966 16 N -0.821 5.821 17 Si 0.986 3.014 18 H -0.262 1.262 19 H -0.267 1.267 20 H -0.258 1.258 21 C -0.242 4.242 22 C -0.066 4.066 23 C -0.182 4.182 24 C -0.162 4.162 25 C -0.145 4.145 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.290 0.710 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 -12.096 7.928 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.284 6.284 3 C 0.076 3.924 4 H 0.141 0.859 5 C 0.280 3.720 6 O -0.423 6.423 7 O -0.273 6.273 8 C 0.067 3.933 9 C -0.230 4.230 10 C -0.100 4.100 11 C -0.209 4.209 12 C 0.085 3.915 13 C -0.521 4.521 14 H 0.098 0.902 15 C -0.182 4.182 16 N -0.446 5.446 17 Si 0.807 3.193 18 H -0.187 1.187 19 H -0.192 1.192 20 H -0.181 1.181 21 C -0.262 4.262 22 C -0.084 4.084 23 C -0.200 4.200 24 C -0.199 4.199 25 C -0.182 4.182 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.129 0.871 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.429 -12.337 7.761 15.233 hybrid contribution -0.093 1.055 -0.660 1.248 sum -4.522 -11.281 7.101 14.076 Atomic orbital electron populations 1.23161 0.78898 1.04946 1.00769 1.87984 1.21962 1.24593 1.93824 1.21150 0.97542 0.87015 0.86686 0.85932 1.25131 0.73376 0.79290 0.94230 1.90607 1.49188 1.54771 1.47770 1.86691 1.72970 1.34844 1.32760 1.21577 0.99906 0.93537 0.78250 1.18978 0.93533 0.92484 1.17990 1.20780 0.98107 0.92504 0.98622 1.21317 0.95523 0.95882 1.08212 1.18050 0.92472 0.93477 0.87490 1.19942 1.02892 0.91931 1.37336 0.90242 1.26818 0.93903 1.05630 0.91843 1.69860 1.15905 1.34791 1.24072 0.85135 0.79829 0.75372 0.78981 1.18668 1.19160 1.18140 1.21191 0.98385 0.92786 1.13798 1.20698 0.93880 0.96508 0.97356 1.22248 0.96169 1.03171 0.98436 1.22979 1.01775 0.92547 1.02591 1.23087 1.03985 1.01601 0.89524 0.91184 0.94935 0.87092 0.91154 0.91456 0.87589 0.87496 0.89923 0.87854 0.86543 0.86713 0.87889 0.87916 0.86980 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.87 113.37 1.23 1.54 16 2 O -0.37 -8.67 8.24 -129.90 -1.07 -9.74 16 3 C 0.14 3.35 2.98 29.85 0.09 3.44 16 4 H 0.12 2.47 7.70 -2.39 -0.02 2.46 16 5 C 0.44 14.32 7.29 71.23 0.52 14.84 16 6 O -0.53 -20.16 16.25 28.40 0.46 -19.70 16 7 O -0.36 -12.94 9.98 -51.46 -0.51 -13.45 16 8 C 0.14 5.25 5.58 71.23 0.40 5.65 16 9 C -0.23 -9.97 5.54 -19.68 -0.11 -10.08 16 10 C -0.08 -3.82 9.67 22.22 0.21 -3.60 16 11 C -0.19 -9.96 8.69 22.73 0.20 -9.77 16 12 C 0.09 4.70 5.57 -21.29 -0.12 4.58 16 13 C -0.49 -26.09 9.07 23.46 0.21 -25.88 16 14 H 0.08 4.04 7.89 -2.91 -0.02 4.02 16 15 C 0.03 1.65 5.20 85.26 0.44 2.10 16 16 N -0.82 -42.10 10.84 21.83 0.24 -41.86 16 17 Si 0.99 37.22 29.58 68.60 2.03 39.25 16 18 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 19 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 20 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 21 C -0.24 -11.81 9.80 22.73 0.22 -11.59 16 22 C -0.07 -2.92 9.67 22.22 0.21 -2.70 16 23 C -0.18 -4.09 5.69 -10.79 -0.06 -4.15 16 24 C -0.16 -3.09 9.87 30.62 0.30 -2.79 16 25 C -0.15 -2.37 10.24 30.62 0.31 -2.06 16 26 H 0.07 0.87 7.98 -2.39 -0.02 0.85 16 27 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 30 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 31 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.11 5.83 6.12 -2.91 -0.02 5.82 16 33 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 34 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 35 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 36 H 0.11 2.89 7.91 -2.39 -0.02 2.87 16 37 H 0.10 2.07 7.03 -2.39 -0.02 2.05 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -62.80 345.88 6.25 -56.55 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 1.03 Total: 29.44 kcal Atomic # 6 Polarization: -44.55 SS G_CDS: 4.07 Total: -40.48 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.24 Total: -41.86 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.12 Total: -42.90 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -62.80 6.25 -56.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279907937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.876 kcal (2) G-P(sol) polarization free energy of solvation -62.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds