Wall clock time and date at job start Tue Mar 31 2020 06:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 114.00120 * 2 1 4 4 H 1.08999 * 110.53665 * 328.84396 * 3 2 1 5 5 C 1.54889 * 110.48716 * 91.45479 * 3 2 1 6 6 C 1.54882 * 102.91567 * 156.52750 * 5 3 2 7 7 C 1.54460 * 104.10394 * 322.30267 * 6 5 3 8 8 H 1.09002 * 109.90048 * 264.07890 * 7 6 5 9 9 O 1.45199 * 110.12668 * 142.72675 * 7 6 5 10 10 C 1.34707 * 116.99990 * 92.67257 * 9 7 6 11 11 O 1.21460 * 120.00113 * 0.02562 * 10 9 7 12 12 C 1.47769 * 119.99759 * 180.02562 * 10 9 7 13 13 C 1.39969 * 120.02872 * 359.72356 * 12 10 9 14 14 C 1.38322 * 120.35052 * 179.78658 * 13 12 10 15 15 C 1.37765 * 120.41543 * 0.46749 * 14 13 12 16 16 C 1.40755 * 120.05039 * 359.79119 * 15 14 13 17 17 C 1.41437 * 120.17158 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99981 * 155.19371 * 17 16 15 19 19 C 1.39941 * 120.00049 * 335.18578 * 17 16 15 20 20 N 1.30827 * 120.00120 * 342.19733 * 19 17 16 21 21 Si 1.86801 * 119.99791 * 162.19235 * 19 17 16 22 22 H 1.48501 * 109.46984 * 94.66116 * 21 19 17 23 23 H 1.48503 * 109.47040 * 214.65712 * 21 19 17 24 24 H 1.48497 * 109.47179 * 334.65978 * 21 19 17 25 25 C 1.39045 * 120.02952 * 180.02562 * 12 10 9 26 26 C 1.53872 * 106.68481 * 23.34130 * 7 6 5 27 27 H 1.08993 * 109.46691 * 59.99839 * 1 2 3 28 28 H 1.08996 * 109.46572 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46919 * 300.00085 * 1 2 3 30 30 H 1.09001 * 110.75527 * 274.93808 * 5 3 2 31 31 H 1.09000 * 110.75356 * 38.12131 * 5 3 2 32 32 H 1.09006 * 110.48308 * 80.82970 * 6 5 3 33 33 H 1.09007 * 110.48766 * 203.46778 * 6 5 3 34 34 H 1.08000 * 119.82731 * 0.02562 * 13 12 10 35 35 H 1.07997 * 119.79331 * 180.26248 * 14 13 12 36 36 H 1.08004 * 119.96946 * 179.76687 * 15 14 13 37 37 H 0.96995 * 120.00110 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.20733 * 359.94761 * 25 12 10 39 39 H 1.09004 * 110.03205 * 240.87800 * 26 7 6 40 40 H 1.09002 * 110.03664 * 119.44700 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3679 2.0101 -0.5281 5 6 2.2645 1.7857 1.4505 6 6 3.3868 2.8385 1.2749 7 6 4.2882 2.2469 0.1689 8 1 5.1255 1.7132 0.6187 9 8 4.7800 3.3057 -0.6945 10 6 5.9725 3.8473 -0.3795 11 8 6.5849 3.4458 0.5895 12 6 6.5354 4.9299 -1.2130 13 6 5.8328 5.3890 -2.3331 14 6 6.3515 6.4050 -3.1154 15 6 7.5694 6.9702 -2.8070 16 6 8.2931 6.5180 -1.6877 17 6 9.5441 7.0960 -1.3691 18 1 9.9097 7.0662 -0.3533 19 6 10.3081 7.7064 -2.3701 20 7 10.0598 7.4522 -3.6291 21 14 11.6824 8.8845 -1.9084 22 1 12.9704 8.1472 -1.8586 23 1 11.7696 9.9652 -2.9232 24 1 11.3996 9.4774 -0.5767 25 6 7.7665 5.4891 -0.8888 26 6 3.4141 1.2715 -0.6387 27 1 -0.3632 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.3677 2.2430 1.8687 31 1 2.6034 0.9605 2.0767 32 1 2.9681 3.7925 0.9540 33 1 3.9455 2.9590 2.2031 34 1 4.8788 4.9503 -2.5858 35 1 5.7997 6.7553 -3.9752 36 1 7.9694 7.7606 -3.4250 37 1 10.5896 7.8749 -4.3229 38 1 8.3142 5.1353 -0.0278 39 1 3.8267 0.2642 -0.5801 40 1 3.3590 1.5929 -1.6788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282572139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:54 Heat of formation + Delta-G solvation = -127.639586 kcal Electronic energy + Delta-G solvation = -22232.923539 eV Core-core repulsion = 18783.825527 eV Total energy + Delta-G solvation = -3449.098012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16545 -38.83898 -37.44333 -36.36334 -34.80085 -33.75618 -30.10321 -29.90077 -29.02088 -27.88567 -26.16643 -25.39011 -23.35769 -21.08128 -20.92996 -20.43797 -19.91867 -18.04078 -17.07413 -16.70467 -16.19315 -15.72608 -15.19792 -15.12282 -15.03876 -14.63726 -14.11470 -13.82066 -13.43743 -13.21845 -12.98734 -12.69773 -12.47861 -12.13790 -12.06767 -11.70191 -11.57908 -11.52576 -11.23701 -11.16103 -10.88221 -10.77826 -10.68804 -10.56274 -10.36344 -10.19125 -9.78389 -9.65365 -9.54388 -9.26052 -7.73755 -7.61600 -6.86744 -4.47028 1.92166 2.69578 3.03708 3.05962 3.09699 3.13959 3.50769 3.58825 3.88044 4.33297 4.39117 4.54025 4.85929 4.98650 5.05920 5.13417 5.17161 5.27023 5.33505 5.36574 5.46243 5.51893 5.56307 5.72205 5.81850 5.88710 6.01879 6.06871 6.17950 6.32480 6.78020 6.82055 6.90760 6.97530 6.99053 7.11800 7.26313 7.59360 7.77778 7.87254 8.05614 8.45026 8.46140 8.73649 8.77368 10.09244 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043570 B = 0.002835 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.486358 B = 9873.989161 C =10246.058591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.084 3.916 4 H 0.073 0.927 5 C -0.143 4.143 6 C -0.138 4.138 7 C 0.084 3.916 8 H 0.090 0.910 9 O -0.348 6.348 10 C 0.512 3.488 11 O -0.524 6.524 12 C -0.108 4.108 13 C -0.183 4.183 14 C -0.118 4.118 15 C -0.133 4.133 16 C 0.096 3.904 17 C -0.460 4.460 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.910 3.090 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.260 1.260 25 C -0.153 4.153 26 C -0.118 4.118 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.282 0.718 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.171 -7.731 3.874 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.027 3.973 4 H 0.091 0.909 5 C -0.181 4.181 6 C -0.176 4.176 7 C 0.028 3.972 8 H 0.108 0.892 9 O -0.265 6.265 10 C 0.360 3.640 11 O -0.414 6.414 12 C -0.109 4.109 13 C -0.203 4.203 14 C -0.136 4.136 15 C -0.153 4.153 16 C 0.093 3.907 17 C -0.489 4.489 18 H 0.099 0.901 19 C -0.142 4.142 20 N -0.420 5.420 21 Si 0.734 3.266 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.173 4.173 26 C -0.156 4.156 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.804 -7.993 3.925 16.427 hybrid contribution 0.463 0.628 0.175 0.799 sum -13.341 -7.366 4.100 15.781 Atomic orbital electron populations 1.22769 0.81155 1.02640 1.00013 1.87910 1.19612 1.27669 1.94955 1.22989 0.94455 0.84331 0.95561 0.90911 1.22944 0.98755 0.99002 0.97365 1.22758 0.96617 0.99273 0.98942 1.23216 0.96579 0.87307 0.90049 0.89155 1.86697 1.36481 1.49384 1.53983 1.21911 0.77903 0.81122 0.83051 1.90725 1.60458 1.61430 1.28767 1.18682 0.97241 0.97367 0.97584 1.20625 1.00354 1.01979 0.97319 1.20694 0.96632 0.97546 0.98745 1.21596 0.93117 1.00837 0.99701 1.17538 0.92744 0.89365 0.91013 1.19566 1.01697 1.31529 0.96132 0.90065 1.25911 0.98503 0.95467 0.94362 1.69792 1.36704 1.34734 1.00731 0.86262 0.80467 0.80051 0.79792 1.19484 1.19976 1.18329 1.21211 0.94918 0.98384 1.02772 1.22224 0.93232 0.99495 1.00627 0.93964 0.89723 0.94070 0.91062 0.90182 0.90081 0.90321 0.87833 0.88439 0.85845 0.90671 0.87284 0.89292 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.88 101.05 1.10 1.33 16 2 O -0.38 -4.13 10.41 -35.23 -0.37 -4.50 16 3 C 0.08 0.89 3.32 -25.07 -0.08 0.80 16 4 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 5 C -0.14 -1.43 6.61 -24.74 -0.16 -1.60 16 6 C -0.14 -1.71 6.59 -24.97 -0.16 -1.88 16 7 C 0.08 1.22 3.25 -25.51 -0.08 1.13 16 8 H 0.09 1.40 7.15 -51.93 -0.37 1.03 16 9 O -0.35 -6.24 9.04 -40.51 -0.37 -6.61 16 10 C 0.51 10.89 7.89 34.63 0.27 11.16 16 11 O -0.52 -11.90 15.58 -19.23 -0.30 -12.20 16 12 C -0.11 -2.49 5.87 -105.05 -0.62 -3.10 16 13 C -0.18 -3.98 9.62 -38.90 -0.37 -4.35 16 14 C -0.12 -2.62 10.01 -39.72 -0.40 -3.01 16 15 C -0.13 -3.30 8.69 -38.80 -0.34 -3.64 16 16 C 0.10 2.50 5.57 -106.87 -0.59 1.90 16 17 C -0.46 -11.94 9.05 -37.73 -0.34 -12.28 16 18 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 19 C 0.08 1.84 5.13 -17.34 -0.09 1.75 16 20 N -0.79 -19.86 10.97 55.55 0.61 -19.25 16 21 Si 0.91 18.21 29.60 -169.99 -5.03 13.18 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 25 C -0.15 -3.83 9.34 -38.43 -0.36 -4.19 16 26 C -0.12 -1.42 6.38 -25.61 -0.16 -1.58 16 27 H 0.04 0.28 8.10 -51.93 -0.42 -0.14 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 2.01 7.59 -52.49 -0.40 1.61 16 35 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.12 3.12 6.17 -52.48 -0.32 2.80 16 37 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 38 H 0.11 2.72 7.64 -52.49 -0.40 2.32 16 39 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 40 H 0.09 1.07 7.96 -51.93 -0.41 0.66 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -28.12 338.71 -8.41 -36.52 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.66 Total: 5.30 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.39 Total: -17.55 kcal Atomic # 7 Polarization: -19.86 SS G_CDS: 0.61 Total: -19.25 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -1.03 Total: -23.31 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.12 -8.41 -36.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282572139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.117 kcal (2) G-P(sol) polarization free energy of solvation -28.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds