Wall clock time and date at job start Tue Mar 31 2020 06:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 114.00120 * 2 1 4 4 H 1.08999 * 110.53665 * 328.84396 * 3 2 1 5 5 C 1.54889 * 110.48716 * 91.45479 * 3 2 1 6 6 C 1.54882 * 102.91567 * 156.52750 * 5 3 2 7 7 C 1.54460 * 104.10394 * 322.30267 * 6 5 3 8 8 H 1.09002 * 109.90048 * 264.07890 * 7 6 5 9 9 O 1.45199 * 110.12668 * 142.72675 * 7 6 5 10 10 C 1.34707 * 116.99990 * 92.67257 * 9 7 6 11 11 O 1.21460 * 120.00113 * 0.02562 * 10 9 7 12 12 C 1.47769 * 119.99759 * 180.02562 * 10 9 7 13 13 C 1.39969 * 120.02872 * 359.72356 * 12 10 9 14 14 C 1.38322 * 120.35052 * 179.78658 * 13 12 10 15 15 C 1.37765 * 120.41543 * 0.46749 * 14 13 12 16 16 C 1.40755 * 120.05039 * 359.79119 * 15 14 13 17 17 C 1.41437 * 120.17158 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99981 * 155.19371 * 17 16 15 19 19 C 1.39941 * 120.00049 * 335.18578 * 17 16 15 20 20 N 1.30827 * 120.00120 * 342.19733 * 19 17 16 21 21 Si 1.86801 * 119.99791 * 162.19235 * 19 17 16 22 22 H 1.48501 * 109.46984 * 94.66116 * 21 19 17 23 23 H 1.48503 * 109.47040 * 214.65712 * 21 19 17 24 24 H 1.48497 * 109.47179 * 334.65978 * 21 19 17 25 25 C 1.39045 * 120.02952 * 180.02562 * 12 10 9 26 26 C 1.53872 * 106.68481 * 23.34130 * 7 6 5 27 27 H 1.08993 * 109.46691 * 59.99839 * 1 2 3 28 28 H 1.08996 * 109.46572 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46919 * 300.00085 * 1 2 3 30 30 H 1.09001 * 110.75527 * 274.93808 * 5 3 2 31 31 H 1.09000 * 110.75356 * 38.12131 * 5 3 2 32 32 H 1.09006 * 110.48308 * 80.82970 * 6 5 3 33 33 H 1.09007 * 110.48766 * 203.46778 * 6 5 3 34 34 H 1.08000 * 119.82731 * 0.02562 * 13 12 10 35 35 H 1.07997 * 119.79331 * 180.26248 * 14 13 12 36 36 H 1.08004 * 119.96946 * 179.76687 * 15 14 13 37 37 H 0.96995 * 120.00110 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.20733 * 359.94761 * 25 12 10 39 39 H 1.09004 * 110.03205 * 240.87800 * 26 7 6 40 40 H 1.09002 * 110.03664 * 119.44700 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3679 2.0101 -0.5281 5 6 2.2645 1.7857 1.4505 6 6 3.3868 2.8385 1.2749 7 6 4.2882 2.2469 0.1689 8 1 5.1255 1.7132 0.6187 9 8 4.7800 3.3057 -0.6945 10 6 5.9725 3.8473 -0.3795 11 8 6.5849 3.4458 0.5895 12 6 6.5354 4.9299 -1.2130 13 6 5.8328 5.3890 -2.3331 14 6 6.3515 6.4050 -3.1154 15 6 7.5694 6.9702 -2.8070 16 6 8.2931 6.5180 -1.6877 17 6 9.5441 7.0960 -1.3691 18 1 9.9097 7.0662 -0.3533 19 6 10.3081 7.7064 -2.3701 20 7 10.0598 7.4522 -3.6291 21 14 11.6824 8.8845 -1.9084 22 1 12.9704 8.1472 -1.8586 23 1 11.7696 9.9652 -2.9232 24 1 11.3996 9.4774 -0.5767 25 6 7.7665 5.4891 -0.8888 26 6 3.4141 1.2715 -0.6387 27 1 -0.3632 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.3677 2.2430 1.8687 31 1 2.6034 0.9605 2.0767 32 1 2.9681 3.7925 0.9540 33 1 3.9455 2.9590 2.2031 34 1 4.8788 4.9503 -2.5858 35 1 5.7997 6.7553 -3.9752 36 1 7.9694 7.7606 -3.4250 37 1 10.5896 7.8749 -4.3229 38 1 8.3142 5.1353 -0.0278 39 1 3.8267 0.2642 -0.5801 40 1 3.3590 1.5929 -1.6788 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282572139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:54 Heat of formation + Delta-G solvation = -141.232603 kcal Electronic energy + Delta-G solvation = -22233.512976 eV Core-core repulsion = 18783.825527 eV Total energy + Delta-G solvation = -3449.687449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.65181 -39.91315 -39.11426 -37.71115 -36.00302 -35.58814 -31.94968 -31.72096 -29.93769 -28.86111 -27.29607 -26.85719 -25.02980 -22.74263 -22.08651 -21.81679 -21.27030 -19.74770 -18.43713 -17.75063 -17.62888 -17.20241 -16.80302 -16.51619 -16.28160 -15.86145 -15.43133 -15.15269 -14.81821 -14.60324 -14.26972 -14.15797 -13.85175 -13.63065 -13.32183 -13.03209 -12.91274 -12.82976 -12.59543 -12.42483 -12.31358 -12.27080 -12.05914 -11.87175 -11.63544 -11.48738 -11.45394 -11.31312 -11.08455 -10.51117 -9.59727 -9.50808 -8.70129 -6.42003 0.11376 0.89017 1.39245 1.44815 1.53917 1.66191 1.80706 2.20902 2.68980 2.76789 3.38905 3.46231 3.60116 3.75435 4.03511 4.15286 4.20323 4.32329 4.37050 4.41755 4.49845 4.55966 4.58896 4.61568 4.79663 4.82149 4.90603 4.91727 4.94185 5.00392 5.04932 5.11546 5.15699 5.23833 5.38237 5.45886 5.75204 5.92199 5.96113 6.19199 6.27014 6.54432 6.78510 6.83750 6.86971 8.28498 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043570 B = 0.002835 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.486358 B = 9873.989161 C =10246.058591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.089 3.911 4 H 0.086 0.914 5 C -0.133 4.133 6 C -0.136 4.136 7 C 0.074 3.926 8 H 0.075 0.925 9 O -0.342 6.342 10 C 0.518 3.482 11 O -0.545 6.545 12 C -0.116 4.116 13 C -0.170 4.170 14 C -0.113 4.113 15 C -0.150 4.150 16 C 0.070 3.930 17 C -0.499 4.499 18 H 0.074 0.926 19 C 0.038 3.962 20 N -0.821 5.821 21 Si 0.983 3.017 22 H -0.264 1.264 23 H -0.261 1.261 24 H -0.261 1.261 25 C -0.179 4.179 26 C -0.115 4.115 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.292 0.708 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.049 -7.812 3.391 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.031 3.969 4 H 0.104 0.896 5 C -0.170 4.170 6 C -0.174 4.174 7 C 0.019 3.981 8 H 0.094 0.906 9 O -0.258 6.258 10 C 0.366 3.634 11 O -0.437 6.437 12 C -0.117 4.117 13 C -0.189 4.189 14 C -0.131 4.131 15 C -0.169 4.169 16 C 0.068 3.932 17 C -0.528 4.528 18 H 0.092 0.908 19 C -0.177 4.177 20 N -0.447 5.447 21 Si 0.803 3.197 22 H -0.189 1.189 23 H -0.185 1.185 24 H -0.185 1.185 25 C -0.199 4.199 26 C -0.152 4.152 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.720 -8.094 3.431 18.011 hybrid contribution 0.898 0.524 0.309 1.085 sum -14.822 -7.570 3.740 17.058 Atomic orbital electron populations 1.22984 0.79400 1.03874 1.00993 1.87881 1.21548 1.27605 1.95062 1.22927 0.93609 0.84791 0.95568 0.89580 1.22901 0.98545 0.98197 0.97394 1.22746 0.96933 1.00042 0.97704 1.23594 0.96815 0.86847 0.90829 0.90649 1.86653 1.34567 1.50022 1.54594 1.21584 0.78679 0.80767 0.82358 1.90711 1.61362 1.62070 1.29597 1.18910 0.96785 0.97727 0.98280 1.20977 1.00976 1.00996 0.95972 1.21049 0.95703 0.96880 0.99501 1.21632 0.94343 1.01380 0.99566 1.17848 0.93424 0.89964 0.91956 1.19788 1.02715 1.33812 0.96484 0.90791 1.26712 1.00670 0.96353 0.93968 1.69815 1.37918 1.35355 1.01611 0.85179 0.77125 0.77828 0.79529 1.18929 1.18496 1.18452 1.21181 0.96317 0.99352 1.03000 1.22207 0.93987 0.98648 1.00387 0.93091 0.88501 0.92953 0.88852 0.90198 0.89965 0.90989 0.84679 0.84924 0.86726 0.89706 0.88735 0.89063 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.88 113.37 1.23 1.52 16 2 O -0.40 -7.67 10.41 -148.98 -1.55 -9.22 16 3 C 0.09 1.64 3.32 31.67 0.11 1.75 16 4 H 0.09 1.37 7.86 -2.39 -0.02 1.35 16 5 C -0.13 -2.34 6.61 31.88 0.21 -2.13 16 6 C -0.14 -3.20 6.59 31.73 0.21 -2.99 16 7 C 0.07 2.08 3.25 31.38 0.10 2.18 16 8 H 0.08 2.36 7.15 -2.39 -0.02 2.34 16 9 O -0.34 -11.90 9.04 -56.17 -0.51 -12.41 16 10 C 0.52 22.09 7.89 70.34 0.56 22.65 16 11 O -0.55 -25.38 15.58 19.97 0.31 -25.07 16 12 C -0.12 -5.38 5.87 -20.14 -0.12 -5.50 16 13 C -0.17 -7.11 9.62 22.71 0.22 -6.89 16 14 C -0.11 -4.87 10.01 22.18 0.22 -4.65 16 15 C -0.15 -7.52 8.69 22.77 0.20 -7.32 16 16 C 0.07 3.80 5.57 -21.32 -0.12 3.68 16 17 C -0.50 -26.96 9.05 23.47 0.21 -26.74 16 18 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 19 C 0.04 1.90 5.13 85.26 0.44 2.34 16 20 N -0.82 -41.52 10.97 21.83 0.24 -41.28 16 21 Si 0.98 37.57 29.60 68.60 2.03 39.60 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 24 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 25 C -0.18 -9.31 9.34 23.02 0.21 -9.09 16 26 C -0.11 -2.57 6.38 31.32 0.20 -2.37 16 27 H 0.05 0.53 8.10 -2.39 -0.02 0.51 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.92 8.08 -2.38 -0.02 1.90 16 33 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.14 4.78 7.59 -2.91 -0.02 4.76 16 35 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 36 H 0.11 5.89 6.17 -2.91 -0.02 5.88 16 37 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 38 H 0.09 5.04 7.64 -2.91 -0.02 5.02 16 39 H 0.09 2.00 8.07 -2.38 -0.02 1.98 16 40 H 0.09 2.00 7.96 -2.39 -0.02 1.98 16 Total: -1.00 -61.75 338.71 5.44 -56.32 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 1.03 Total: 25.64 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 3.88 Total: -33.58 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.24 Total: -41.28 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -1.75 Total: -46.70 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -61.75 5.44 -56.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282572139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.917 kcal (2) G-P(sol) polarization free energy of solvation -61.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds