Wall clock time and date at job start Tue Mar 31 2020 06:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99993 * 2 1 4 4 H 1.09004 * 110.81957 * 31.87783 * 3 2 1 5 5 C 1.54895 * 110.75529 * 268.54847 * 3 2 1 6 6 C 1.54263 * 104.19473 * 203.74247 * 5 3 2 7 7 C 1.53877 * 106.60168 * 23.61031 * 6 5 3 8 8 H 1.09002 * 110.02967 * 240.67158 * 7 6 5 9 9 O 1.45196 * 110.03573 * 119.28550 * 7 6 5 10 10 C 1.34705 * 116.99980 * 91.45576 * 9 7 6 11 11 O 1.21464 * 120.00367 * 359.97438 * 10 9 7 12 12 C 1.47770 * 119.99818 * 180.02562 * 10 9 7 13 13 C 1.39971 * 120.03042 * 0.02562 * 12 10 9 14 14 C 1.38314 * 120.35140 * 180.02562 * 13 12 10 15 15 C 1.37761 * 120.41890 * 359.97438 * 14 13 12 16 16 C 1.40749 * 120.05048 * 359.97438 * 15 14 13 17 17 C 1.41437 * 120.17255 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00030 * 155.19659 * 17 16 15 19 19 C 1.39939 * 120.00100 * 335.18757 * 17 16 15 20 20 N 1.30828 * 120.00251 * 342.19668 * 19 17 16 21 21 Si 1.86800 * 120.00026 * 162.19256 * 19 17 16 22 22 H 1.48503 * 109.47503 * 94.65883 * 21 19 17 23 23 H 1.48499 * 109.47419 * 214.66080 * 21 19 17 24 24 H 1.48507 * 109.46910 * 334.65970 * 21 19 17 25 25 C 1.39048 * 120.03121 * 179.97438 * 12 10 9 26 26 C 1.54266 * 106.59720 * 359.97438 * 7 6 5 27 27 H 1.08998 * 109.47113 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46718 * 299.99786 * 1 2 3 29 29 H 1.08999 * 109.47005 * 60.00177 * 1 2 3 30 30 H 1.08996 * 110.48540 * 85.06420 * 5 3 2 31 31 H 1.08996 * 110.59678 * 322.47382 * 5 3 2 32 32 H 1.08998 * 110.03447 * 264.32196 * 6 5 3 33 33 H 1.09004 * 110.03331 * 142.89167 * 6 5 3 34 34 H 1.08004 * 119.82185 * 359.97438 * 13 12 10 35 35 H 1.08003 * 119.78718 * 179.97438 * 14 13 12 36 36 H 1.08001 * 119.97015 * 179.97438 * 15 14 13 37 37 H 0.96998 * 120.00082 * 180.02562 * 20 19 17 38 38 H 1.08003 * 120.20146 * 0.26255 * 25 12 10 39 39 H 1.08997 * 110.48631 * 95.06916 * 26 7 6 40 40 H 1.09002 * 110.48541 * 217.71621 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3774 2.0113 0.5381 5 6 2.2670 1.7920 -1.4480 6 6 3.3891 2.8404 -1.3014 7 6 4.1316 2.5099 0.0052 8 1 4.0637 3.3503 0.6961 9 8 5.5239 2.2092 -0.2763 10 6 6.3931 3.2372 -0.2297 11 8 5.9988 4.3544 0.0382 12 6 7.8263 3.0060 -0.5057 13 6 8.2812 1.7192 -0.8162 14 6 9.6213 1.4952 -1.0751 15 6 10.5236 2.5353 -1.0312 16 6 10.0848 3.8364 -0.7219 17 6 11.0088 4.9062 -0.6766 18 1 10.6710 5.9189 -0.8405 19 6 12.3608 4.6527 -0.4194 20 7 12.7228 3.5148 0.1152 21 14 13.6487 5.9389 -0.8393 22 1 13.9333 6.7650 0.3614 23 1 14.8952 5.2649 -1.2832 24 1 13.1414 6.8096 -1.9302 25 6 8.7241 4.0668 -0.4584 26 6 3.4345 1.2725 0.6074 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.3686 2.2501 -1.8614 31 1 2.5970 0.9655 -2.0773 32 1 2.9602 3.8409 -1.2443 33 1 4.0740 2.7750 -2.1468 34 1 7.5822 0.8967 -0.8528 35 1 9.9624 0.4985 -1.3133 36 1 11.5684 2.3521 -1.2343 37 1 13.6599 3.3392 0.2938 38 1 8.3782 5.0608 -0.2160 39 1 3.9535 0.3607 0.3119 40 1 3.3883 1.3515 1.6935 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282572142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:57 Heat of formation + Delta-G solvation = -126.930791 kcal Electronic energy + Delta-G solvation = -22230.846672 eV Core-core repulsion = 18781.779396 eV Total energy + Delta-G solvation = -3449.067276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.17475 -38.83258 -37.44035 -36.37871 -34.81425 -33.74816 -30.09423 -29.89186 -29.01732 -27.91070 -26.18024 -25.38057 -23.36558 -21.11455 -20.93371 -20.46427 -19.77474 -17.97119 -17.26205 -16.44116 -16.36726 -15.72085 -15.18157 -15.15424 -15.00438 -14.58476 -14.46984 -13.74026 -13.42303 -13.28869 -12.89711 -12.51202 -12.34395 -12.23628 -12.06974 -11.71156 -11.67460 -11.54813 -11.22616 -11.15524 -10.93101 -10.76754 -10.60519 -10.54582 -10.36063 -10.19713 -9.79203 -9.65288 -9.53984 -9.25330 -7.72766 -7.60692 -6.85949 -4.46214 1.92617 2.70417 3.02387 3.04499 3.06578 3.12958 3.55418 3.62877 3.88613 4.32200 4.43119 4.54801 4.71949 4.96234 5.03325 5.11271 5.18688 5.26341 5.31027 5.35279 5.45465 5.52791 5.59329 5.68739 5.82121 5.94623 6.02386 6.07390 6.18953 6.34443 6.78712 6.83028 6.91880 6.95861 6.99719 7.12610 7.27302 7.60405 7.79034 7.88060 8.06505 8.45365 8.46832 8.74510 8.78186 10.10048 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044488 B = 0.002826 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.238484 B = 9904.992841 C =10248.037458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.084 3.916 4 H 0.072 0.928 5 C -0.142 4.142 6 C -0.138 4.138 7 C 0.085 3.915 8 H 0.089 0.911 9 O -0.345 6.345 10 C 0.512 3.488 11 O -0.524 6.524 12 C -0.108 4.108 13 C -0.182 4.182 14 C -0.118 4.118 15 C -0.133 4.133 16 C 0.096 3.904 17 C -0.460 4.460 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.795 5.795 21 Si 0.910 3.090 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.260 1.260 25 C -0.153 4.153 26 C -0.116 4.116 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.282 0.718 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.221 -4.805 -1.009 16.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.026 3.974 4 H 0.090 0.910 5 C -0.180 4.180 6 C -0.176 4.176 7 C 0.029 3.971 8 H 0.107 0.893 9 O -0.263 6.263 10 C 0.360 3.640 11 O -0.415 6.415 12 C -0.109 4.109 13 C -0.202 4.202 14 C -0.136 4.136 15 C -0.152 4.152 16 C 0.093 3.907 17 C -0.490 4.490 18 H 0.099 0.901 19 C -0.142 4.142 20 N -0.420 5.420 21 Si 0.734 3.266 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.173 4.173 26 C -0.153 4.153 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.044 -4.769 -0.833 16.759 hybrid contribution 0.330 0.840 -0.046 0.904 sum -15.714 -3.929 -0.879 16.221 Atomic orbital electron populations 1.22778 0.81158 1.02728 0.99939 1.87924 1.19558 1.27327 1.94914 1.23069 0.94117 0.84500 0.95721 0.90956 1.22821 0.98505 0.99266 0.97443 1.22511 0.97711 0.99193 0.98206 1.23134 0.78712 0.98146 0.97078 0.89331 1.86709 1.18328 1.39582 1.81669 1.21925 0.87630 0.82008 0.72428 1.90723 1.79812 1.24645 1.46298 1.18681 0.87013 0.96031 1.09187 1.20643 0.95683 0.94725 1.09136 1.20697 0.93116 0.97983 1.01813 1.21597 0.99484 0.92773 1.01368 1.17535 0.90668 0.93310 0.89155 1.19561 0.91653 0.94854 1.42889 0.90079 1.25909 0.99845 0.96339 0.92148 1.69794 1.19116 1.23739 1.29326 0.86265 0.79438 0.80951 0.79925 1.19498 1.19976 1.18334 1.21203 0.93305 0.96854 1.05946 1.22404 0.93596 0.99081 1.00229 0.89638 0.94048 0.94044 0.91382 0.90112 0.90590 0.90061 0.87763 0.88411 0.85841 0.90676 0.87298 0.88654 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.89 101.05 1.10 1.32 16 2 O -0.38 -4.12 10.49 -35.23 -0.37 -4.49 16 3 C 0.08 0.86 3.34 -24.75 -0.08 0.78 16 4 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 5 C -0.14 -1.47 6.55 -25.07 -0.16 -1.63 16 6 C -0.14 -1.72 6.62 -25.61 -0.17 -1.89 16 7 C 0.08 1.22 3.23 -25.61 -0.08 1.14 16 8 H 0.09 1.32 7.19 -51.93 -0.37 0.95 16 9 O -0.35 -6.28 9.03 -40.51 -0.37 -6.65 16 10 C 0.51 10.92 7.89 34.63 0.27 11.19 16 11 O -0.52 -11.87 15.61 -19.24 -0.30 -12.17 16 12 C -0.11 -2.51 5.87 -105.05 -0.62 -3.12 16 13 C -0.18 -4.00 9.62 -38.90 -0.37 -4.38 16 14 C -0.12 -2.64 10.01 -39.73 -0.40 -3.04 16 15 C -0.13 -3.31 8.69 -38.81 -0.34 -3.65 16 16 C 0.10 2.51 5.57 -106.88 -0.59 1.91 16 17 C -0.46 -11.98 9.05 -37.73 -0.34 -12.32 16 18 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 19 C 0.08 1.85 5.13 -17.34 -0.09 1.76 16 20 N -0.79 -19.92 10.97 55.55 0.61 -19.31 16 21 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 25 C -0.15 -3.85 9.34 -38.43 -0.36 -4.21 16 26 C -0.12 -1.39 6.29 -25.08 -0.16 -1.54 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.26 8.11 -51.93 -0.42 -0.16 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.12 7.96 -51.93 -0.41 0.70 16 34 H 0.10 2.06 7.59 -52.48 -0.40 1.66 16 35 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 36 H 0.12 3.14 6.17 -52.49 -0.32 2.81 16 37 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 38 H 0.11 2.72 7.64 -52.48 -0.40 2.32 16 39 H 0.09 1.24 8.08 -51.93 -0.42 0.82 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -28.31 338.84 -8.41 -36.73 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.67 Total: 5.24 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -2.39 Total: -17.68 kcal Atomic # 7 Polarization: -19.92 SS G_CDS: 0.61 Total: -19.31 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -1.04 Total: -23.31 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.31 -8.41 -36.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282572142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.204 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds