Wall clock time and date at job start Tue Mar 31 2020 06:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99993 * 2 1 4 4 H 1.09004 * 110.81957 * 31.87783 * 3 2 1 5 5 C 1.54895 * 110.75529 * 268.54847 * 3 2 1 6 6 C 1.54263 * 104.19473 * 203.74247 * 5 3 2 7 7 C 1.53877 * 106.60168 * 23.61031 * 6 5 3 8 8 H 1.09002 * 110.02967 * 240.67158 * 7 6 5 9 9 O 1.45196 * 110.03573 * 119.28550 * 7 6 5 10 10 C 1.34705 * 116.99980 * 91.45576 * 9 7 6 11 11 O 1.21464 * 120.00367 * 359.97438 * 10 9 7 12 12 C 1.47770 * 119.99818 * 180.02562 * 10 9 7 13 13 C 1.39971 * 120.03042 * 0.02562 * 12 10 9 14 14 C 1.38314 * 120.35140 * 180.02562 * 13 12 10 15 15 C 1.37761 * 120.41890 * 359.97438 * 14 13 12 16 16 C 1.40749 * 120.05048 * 359.97438 * 15 14 13 17 17 C 1.41437 * 120.17255 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00030 * 155.19659 * 17 16 15 19 19 C 1.39939 * 120.00100 * 335.18757 * 17 16 15 20 20 N 1.30828 * 120.00251 * 342.19668 * 19 17 16 21 21 Si 1.86800 * 120.00026 * 162.19256 * 19 17 16 22 22 H 1.48503 * 109.47503 * 94.65883 * 21 19 17 23 23 H 1.48499 * 109.47419 * 214.66080 * 21 19 17 24 24 H 1.48507 * 109.46910 * 334.65970 * 21 19 17 25 25 C 1.39048 * 120.03121 * 179.97438 * 12 10 9 26 26 C 1.54266 * 106.59720 * 359.97438 * 7 6 5 27 27 H 1.08998 * 109.47113 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46718 * 299.99786 * 1 2 3 29 29 H 1.08999 * 109.47005 * 60.00177 * 1 2 3 30 30 H 1.08996 * 110.48540 * 85.06420 * 5 3 2 31 31 H 1.08996 * 110.59678 * 322.47382 * 5 3 2 32 32 H 1.08998 * 110.03447 * 264.32196 * 6 5 3 33 33 H 1.09004 * 110.03331 * 142.89167 * 6 5 3 34 34 H 1.08004 * 119.82185 * 359.97438 * 13 12 10 35 35 H 1.08003 * 119.78718 * 179.97438 * 14 13 12 36 36 H 1.08001 * 119.97015 * 179.97438 * 15 14 13 37 37 H 0.96998 * 120.00082 * 180.02562 * 20 19 17 38 38 H 1.08003 * 120.20146 * 0.26255 * 25 12 10 39 39 H 1.08997 * 110.48631 * 95.06916 * 26 7 6 40 40 H 1.09002 * 110.48541 * 217.71621 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3774 2.0113 0.5381 5 6 2.2670 1.7920 -1.4480 6 6 3.3891 2.8404 -1.3014 7 6 4.1316 2.5099 0.0052 8 1 4.0637 3.3503 0.6961 9 8 5.5239 2.2092 -0.2763 10 6 6.3931 3.2372 -0.2297 11 8 5.9988 4.3544 0.0382 12 6 7.8263 3.0060 -0.5057 13 6 8.2812 1.7192 -0.8162 14 6 9.6213 1.4952 -1.0751 15 6 10.5236 2.5353 -1.0312 16 6 10.0848 3.8364 -0.7219 17 6 11.0088 4.9062 -0.6766 18 1 10.6710 5.9189 -0.8405 19 6 12.3608 4.6527 -0.4194 20 7 12.7228 3.5148 0.1152 21 14 13.6487 5.9389 -0.8393 22 1 13.9333 6.7650 0.3614 23 1 14.8952 5.2649 -1.2832 24 1 13.1414 6.8096 -1.9302 25 6 8.7241 4.0668 -0.4584 26 6 3.4345 1.2725 0.6074 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.3686 2.2501 -1.8614 31 1 2.5970 0.9655 -2.0773 32 1 2.9602 3.8409 -1.2443 33 1 4.0740 2.7750 -2.1468 34 1 7.5822 0.8967 -0.8528 35 1 9.9624 0.4985 -1.3133 36 1 11.5684 2.3521 -1.2343 37 1 13.6599 3.3392 0.2938 38 1 8.3782 5.0608 -0.2160 39 1 3.9535 0.3607 0.3119 40 1 3.3883 1.3515 1.6935 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282572142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:56 Heat of formation + Delta-G solvation = -140.740651 kcal Electronic energy + Delta-G solvation = -22231.445513 eV Core-core repulsion = 18781.779396 eV Total energy + Delta-G solvation = -3449.666117 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66098 -39.90636 -39.11626 -37.71952 -36.02423 -35.59212 -31.95197 -31.72495 -29.93300 -28.87633 -27.30136 -26.86271 -25.04019 -22.75552 -22.15143 -21.82016 -21.14449 -19.68299 -18.53679 -17.79986 -17.47352 -17.27778 -16.79419 -16.52824 -16.28986 -15.80102 -15.51606 -15.17456 -15.09616 -14.54412 -14.28293 -14.12408 -13.71871 -13.45140 -13.35736 -13.01877 -12.98475 -12.83531 -12.59626 -12.48895 -12.31211 -12.29987 -12.05650 -11.86227 -11.59802 -11.50523 -11.42665 -11.30616 -11.08511 -10.52082 -9.60180 -9.51275 -8.70142 -6.42080 0.10956 0.88624 1.39299 1.44891 1.54012 1.64010 1.80340 2.20884 2.68937 2.79095 3.39302 3.48668 3.60228 3.83233 3.84169 4.14559 4.25371 4.33537 4.34078 4.40794 4.48280 4.55732 4.57023 4.61794 4.78325 4.80722 4.90833 4.91926 4.94268 5.00155 5.08515 5.13947 5.14623 5.23645 5.38045 5.46052 5.74753 5.91957 5.95854 6.18592 6.27020 6.54141 6.78380 6.83655 6.86699 8.28500 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044488 B = 0.002826 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.238484 B = 9904.992841 C =10248.037458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.400 6.400 3 C 0.090 3.910 4 H 0.094 0.906 5 C -0.135 4.135 6 C -0.137 4.137 7 C 0.074 3.926 8 H 0.083 0.917 9 O -0.344 6.344 10 C 0.518 3.482 11 O -0.543 6.543 12 C -0.116 4.116 13 C -0.172 4.172 14 C -0.113 4.113 15 C -0.150 4.150 16 C 0.070 3.930 17 C -0.498 4.498 18 H 0.075 0.925 19 C 0.038 3.962 20 N -0.821 5.821 21 Si 0.983 3.017 22 H -0.264 1.264 23 H -0.261 1.261 24 H -0.260 1.260 25 C -0.178 4.178 26 C -0.113 4.113 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.292 0.708 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.429 -5.679 -1.217 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.032 3.968 4 H 0.111 0.889 5 C -0.172 4.172 6 C -0.175 4.175 7 C 0.020 3.980 8 H 0.101 0.899 9 O -0.260 6.260 10 C 0.366 3.634 11 O -0.435 6.435 12 C -0.117 4.117 13 C -0.191 4.191 14 C -0.131 4.131 15 C -0.169 4.169 16 C 0.068 3.932 17 C -0.527 4.527 18 H 0.093 0.907 19 C -0.177 4.177 20 N -0.447 5.447 21 Si 0.804 3.196 22 H -0.189 1.189 23 H -0.185 1.185 24 H -0.184 1.184 25 C -0.197 4.197 26 C -0.151 4.151 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.284 -5.675 -1.039 18.221 hybrid contribution 0.551 0.999 0.046 1.142 sum -16.732 -4.676 -0.993 17.402 Atomic orbital electron populations 1.22997 0.79314 1.03910 1.01054 1.87891 1.21606 1.27449 1.95023 1.23027 0.93274 0.85006 0.95507 0.88864 1.22780 0.98442 0.98333 0.97669 1.22510 0.97994 1.00649 0.96359 1.23554 0.76744 0.99384 0.98367 0.89929 1.86668 1.20035 1.38262 1.81078 1.21563 0.87457 0.82232 0.72114 1.90705 1.80141 1.25527 1.47155 1.18917 0.88151 0.96136 1.08524 1.20964 0.96047 0.94851 1.07247 1.21038 0.92887 0.98853 1.00370 1.21626 0.99633 0.93132 1.02550 1.17850 0.91279 0.94241 0.89804 1.19790 0.93153 0.94741 1.45043 0.90704 1.26723 1.01181 0.98574 0.91260 1.69818 1.20193 1.25281 1.29407 0.85172 0.76731 0.78122 0.79592 1.18877 1.18542 1.18428 1.21180 0.93696 0.97084 1.07789 1.22414 0.94551 0.97150 1.00941 0.88569 0.92851 0.92973 0.89011 0.90857 0.89591 0.91625 0.84974 0.85037 0.86708 0.89704 0.88565 0.89724 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.89 113.37 1.23 1.51 16 2 O -0.40 -7.74 10.49 -148.98 -1.56 -9.30 16 3 C 0.09 1.62 3.34 31.88 0.11 1.73 16 4 H 0.09 1.31 7.89 -2.38 -0.02 1.29 16 5 C -0.13 -2.45 6.55 31.67 0.21 -2.24 16 6 C -0.14 -3.24 6.62 31.32 0.21 -3.03 16 7 C 0.07 2.06 3.23 31.32 0.10 2.16 16 8 H 0.08 2.41 7.19 -2.39 -0.02 2.39 16 9 O -0.34 -12.27 9.03 -56.15 -0.51 -12.78 16 10 C 0.52 22.21 7.89 70.34 0.56 22.77 16 11 O -0.54 -25.00 15.61 19.95 0.31 -24.69 16 12 C -0.12 -5.45 5.87 -20.14 -0.12 -5.57 16 13 C -0.17 -7.37 9.62 22.71 0.22 -7.15 16 14 C -0.11 -4.97 10.01 22.17 0.22 -4.75 16 15 C -0.15 -7.60 8.69 22.77 0.20 -7.40 16 16 C 0.07 3.83 5.57 -21.33 -0.12 3.71 16 17 C -0.50 -26.94 9.05 23.47 0.21 -26.72 16 18 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 19 C 0.04 1.89 5.13 85.25 0.44 2.33 16 20 N -0.82 -41.66 10.97 21.83 0.24 -41.42 16 21 Si 0.98 37.60 29.59 68.60 2.03 39.63 16 22 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 23 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 25 C -0.18 -9.28 9.34 23.02 0.21 -9.06 16 26 C -0.11 -2.53 6.29 31.66 0.20 -2.33 16 27 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 0.50 8.11 -2.39 -0.02 0.49 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.76 7.96 -2.38 -0.02 1.74 16 34 H 0.13 4.90 7.59 -2.91 -0.02 4.88 16 35 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.12 5.95 6.17 -2.91 -0.02 5.94 16 37 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 38 H 0.10 5.11 7.64 -2.91 -0.02 5.09 16 39 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 40 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -62.16 338.84 5.42 -56.74 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 1.03 Total: 25.88 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 3.88 Total: -34.07 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.24 Total: -41.42 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -1.76 Total: -46.77 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -62.16 5.42 -56.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282572142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.000 kcal (2) G-P(sol) polarization free energy of solvation -62.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds