Wall clock time and date at job start Tue Mar 31 2020 06:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42908 * 114.00182 * 2 1 4 4 H 1.09001 * 110.01476 * 331.39462 * 3 2 1 5 5 C 1.53874 * 110.03148 * 92.83039 * 3 2 1 6 6 C 1.54267 * 106.59639 * 119.28751 * 5 3 2 7 7 C 1.54894 * 104.19671 * 23.60954 * 6 5 3 8 8 H 1.09007 * 110.75271 * 80.37088 * 7 6 5 9 9 O 1.45193 * 110.75570 * 203.74131 * 7 6 5 10 10 C 1.34703 * 117.00126 * 263.32854 * 9 7 6 11 11 O 1.21469 * 119.99934 * 359.97438 * 10 9 7 12 12 C 1.47775 * 120.00152 * 180.02562 * 10 9 7 13 13 C 1.39972 * 120.02707 * 359.97438 * 12 10 9 14 14 C 1.38308 * 120.34886 * 180.02562 * 13 12 10 15 15 C 1.37761 * 120.42404 * 359.97438 * 14 13 12 16 16 C 1.40753 * 120.04733 * 359.97438 * 15 14 13 17 17 C 1.41440 * 120.17572 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00190 * 24.35608 * 17 16 15 19 19 C 1.39933 * 119.99757 * 204.35543 * 17 16 15 20 20 N 1.30822 * 120.00518 * 17.73970 * 19 17 16 21 21 Si 1.86804 * 120.00041 * 197.73389 * 19 17 16 22 22 H 1.48500 * 109.46753 * 90.00099 * 21 19 17 23 23 H 1.48495 * 109.47309 * 210.00236 * 21 19 17 24 24 H 1.48502 * 109.47179 * 330.00614 * 21 19 17 25 25 C 1.39046 * 120.03177 * 179.72681 * 12 10 9 26 26 C 1.54262 * 110.03320 * 210.00040 * 3 2 1 27 27 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47344 * 299.99898 * 1 2 3 29 29 H 1.08998 * 109.47592 * 59.99986 * 1 2 3 30 30 H 1.08991 * 110.03298 * 238.57297 * 5 3 2 31 31 H 1.08998 * 110.02998 * 359.95597 * 5 3 2 32 32 H 1.09005 * 110.48643 * 264.93598 * 6 5 3 33 33 H 1.08998 * 110.48735 * 142.28893 * 6 5 3 34 34 H 1.07995 * 119.82332 * 0.02684 * 13 12 10 35 35 H 1.08011 * 119.78960 * 180.02562 * 14 13 12 36 36 H 1.07994 * 119.98072 * 180.02562 * 15 14 13 37 37 H 0.97000 * 120.00601 * 179.97438 * 20 19 17 38 38 H 1.08000 * 120.20319 * 359.97438 * 25 12 10 39 39 H 1.09008 * 110.48433 * 98.42592 * 26 3 2 40 40 H 1.08996 * 110.48873 * 335.78391 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3406 2.0121 -0.4904 5 6 2.2898 1.7580 1.4439 6 6 3.8116 1.9894 1.5463 7 6 4.2539 2.2590 0.0865 8 1 4.0445 3.2908 -0.1962 9 8 5.6619 1.9513 -0.0897 10 6 6.5278 2.9797 -0.0057 11 8 6.1179 4.1029 0.2084 12 6 7.9764 2.7416 -0.1752 13 6 8.4493 1.4477 -0.4225 14 6 9.8038 1.2172 -0.5817 15 6 10.7029 2.2577 -0.4993 16 6 10.2461 3.5660 -0.2523 17 6 11.1668 4.6364 -0.1677 18 1 12.1261 4.5635 -0.6583 19 6 10.8345 5.7898 0.5516 20 7 9.8557 5.7605 1.4190 21 14 11.7888 7.3714 0.2733 22 1 11.1395 8.1578 -0.8061 23 1 11.8027 8.1681 1.5264 24 1 13.1827 7.0455 -0.1216 25 6 8.8703 3.8036 -0.0942 26 6 3.3718 1.2777 -0.7247 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.7563 2.6847 1.6547 31 1 1.9814 0.9821 2.1446 32 1 4.3072 1.1006 1.9370 33 1 4.0246 2.8537 2.1752 34 1 7.7530 0.6249 -0.4894 35 1 10.1588 0.2152 -0.7726 36 1 11.7589 2.0697 -0.6251 37 1 9.6256 6.5600 1.9179 38 1 8.5096 4.8044 0.0920 39 1 3.2637 1.6228 -1.7530 40 1 3.7963 0.2741 -0.7007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282572145.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:59 Heat of formation + Delta-G solvation = -126.317472 kcal Electronic energy + Delta-G solvation = -22441.925443 eV Core-core repulsion = 18992.884762 eV Total energy + Delta-G solvation = -3449.040681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.04890 -38.85646 -37.40287 -36.24627 -34.76609 -33.74402 -30.37356 -29.51282 -28.94511 -27.87621 -26.21842 -25.36655 -23.33924 -21.03666 -20.67013 -20.62991 -19.76013 -17.94798 -17.11978 -16.47856 -16.22590 -15.70837 -15.21831 -15.11894 -14.85268 -14.62489 -14.39214 -13.70960 -13.40511 -13.20505 -12.86105 -12.55767 -12.24445 -12.14751 -11.92705 -11.81950 -11.66720 -11.48728 -11.20909 -11.12631 -10.85285 -10.74289 -10.58129 -10.52233 -10.21628 -10.05541 -9.78538 -9.72900 -9.46625 -9.25606 -7.74947 -7.56467 -6.83749 -4.44725 1.97770 2.77289 3.05816 3.08862 3.09575 3.13062 3.58398 3.68276 3.89330 4.38468 4.44649 4.58009 4.76654 5.03678 5.06971 5.19362 5.22548 5.28888 5.31803 5.36951 5.53055 5.54880 5.68878 5.74717 5.87386 5.93390 6.08711 6.11861 6.20674 6.40865 6.66036 6.93232 6.96098 6.99796 7.02668 7.16318 7.30648 7.68005 7.75146 7.90281 8.09663 8.43501 8.56714 8.76150 8.78220 10.11572 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028193 B = 0.003290 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.915462 B = 8507.684695 C = 9232.260726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.087 3.913 4 H 0.068 0.932 5 C -0.143 4.143 6 C -0.137 4.137 7 C 0.082 3.918 8 H 0.093 0.907 9 O -0.344 6.344 10 C 0.512 3.488 11 O -0.518 6.518 12 C -0.115 4.115 13 C -0.193 4.193 14 C -0.104 4.104 15 C -0.202 4.202 16 C 0.095 3.905 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.787 5.787 21 Si 0.912 3.088 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.089 4.089 26 C -0.117 4.117 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.285 0.715 38 H 0.136 0.864 39 H 0.079 0.921 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.125 -6.116 -1.307 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C 0.029 3.971 4 H 0.086 0.914 5 C -0.181 4.181 6 C -0.174 4.174 7 C 0.026 3.974 8 H 0.111 0.889 9 O -0.262 6.262 10 C 0.359 3.641 11 O -0.408 6.408 12 C -0.117 4.117 13 C -0.213 4.213 14 C -0.122 4.122 15 C -0.221 4.221 16 C 0.092 3.908 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.146 4.146 20 N -0.411 5.411 21 Si 0.736 3.264 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.109 4.109 26 C -0.155 4.155 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.153 0.847 39 H 0.098 0.902 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.296 -5.801 -1.048 15.463 hybrid contribution 0.021 1.047 0.110 1.053 sum -14.274 -4.754 -0.938 15.074 Atomic orbital electron populations 1.22783 0.81308 1.02676 0.99909 1.87969 1.19436 1.27622 1.94956 1.22697 0.94456 0.84543 0.95409 0.91375 1.22616 0.96452 1.01814 0.97211 1.22691 0.95117 1.03112 0.96518 1.23509 0.78506 0.99865 0.95526 0.88908 1.86658 1.17139 1.39264 1.83104 1.21911 0.88030 0.82056 0.72102 1.90743 1.79636 1.24288 1.46126 1.18842 0.86864 0.96038 1.09919 1.20574 0.95285 0.94867 1.10550 1.20514 0.93125 0.97446 1.01120 1.21187 0.97700 0.92705 1.10550 1.17548 0.91651 0.91957 0.89596 1.19575 1.02312 0.98585 1.28434 0.89924 1.25966 0.94965 1.00706 0.92952 1.69777 1.24857 1.30453 1.16052 0.86252 0.80648 0.80751 0.78769 1.19153 1.20225 1.18532 1.21660 0.92125 0.97813 0.99274 1.22444 0.92850 1.01603 0.98575 0.89694 0.94085 0.94068 0.91093 0.90208 0.90076 0.90668 0.87828 0.88518 0.88341 0.90429 0.84688 0.90244 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.32 16 2 O -0.38 -4.27 10.26 -35.23 -0.36 -4.63 16 3 C 0.09 0.93 3.39 -25.62 -0.09 0.85 16 4 H 0.07 0.62 7.80 -51.93 -0.41 0.21 16 5 C -0.14 -1.53 6.61 -25.61 -0.17 -1.70 16 6 C -0.14 -1.86 6.56 -25.07 -0.16 -2.03 16 7 C 0.08 1.25 3.28 -24.74 -0.08 1.17 16 8 H 0.09 1.48 7.14 -51.93 -0.37 1.11 16 9 O -0.34 -6.59 9.26 -40.50 -0.37 -6.96 16 10 C 0.51 11.58 7.90 34.63 0.27 11.86 16 11 O -0.52 -12.64 15.58 -19.24 -0.30 -12.94 16 12 C -0.12 -2.80 5.87 -105.05 -0.62 -3.42 16 13 C -0.19 -4.29 9.62 -38.91 -0.37 -4.66 16 14 C -0.10 -2.25 10.01 -39.73 -0.40 -2.65 16 15 C -0.20 -4.77 9.78 -38.81 -0.38 -5.15 16 16 C 0.09 2.49 5.57 -106.87 -0.60 1.90 16 17 C -0.46 -11.95 9.05 -37.73 -0.34 -12.29 16 18 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 19 C 0.07 1.82 5.14 -17.35 -0.09 1.73 16 20 N -0.79 -20.60 10.95 55.55 0.61 -19.99 16 21 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 24 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 25 C -0.09 -2.37 8.24 -38.43 -0.32 -2.69 16 26 C -0.12 -1.46 6.29 -25.07 -0.16 -1.62 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.27 8.10 -51.93 -0.42 -0.15 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.82 7.95 -51.93 -0.41 0.41 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 2.08 7.59 -52.49 -0.40 1.68 16 35 H 0.10 1.78 8.06 -52.48 -0.42 1.35 16 36 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 38 H 0.14 3.83 5.74 -52.49 -0.30 3.52 16 39 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -28.94 338.70 -8.41 -37.35 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.66 Total: 5.89 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -2.40 Total: -17.37 kcal Atomic # 7 Polarization: -20.60 SS G_CDS: 0.61 Total: -19.99 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -1.04 Total: -24.53 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.94 -8.41 -37.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282572145.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.967 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds